429
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome of the non-biting midge Polypedilum henicurum Wang, 1995 (Diptera: Chironomidae)

, , , &
Pages 908-911 | Received 02 Mar 2023, Accepted 04 Aug 2023, Published online: 25 Aug 2023

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi:10.1089/cmb.2012.0021.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi:10.1016/j.ympev.2012.08.023.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi:10.1093/bioinformatics/btu170.
  • Deviatiiarov R, Kikawada T, Gusev O. 2017. The complete mitochondrial genome of an anhydrobiotic midge Polypedilum vanderplanki (Chironomidae, Diptera). Mitochondrial DNA A DNA Mapp Seq Anal. 28(2):218–220. doi:10.3109/19401736.2015.1115849.
  • Fang XL, Li XT, Lu T, Fu J, Shen M, Xiao YL, Fu Y. 2022. Complete mitochondrial genome of Limnophyes minimus (Diptera: Chironomidae). Mitochondrial DNA B Resour. 7(1):280–282. doi:10.1080/23802359.2022.2029604.
  • Jiang XH, Han XJ, Liu QY, Hou XH. 2019. The mitochondrial genome of Forcipomyia makanensis (Insecta: Diptera: Ceratopogonidae). Mitochondrial DNA Part B. 4(1):344–345. doi:10.1080/23802359.2018.1544048.
  • Jiang YW, Zhao YM, Lin XL. 2022. First report of the complete mitogenome of Tanypus punctipennis Meigen, 1818 (Diptera, Chironomidae) from Hebei Province, China. Mitochondrial DNA B Resour. 7(1):215–216. doi:10.1080/23802359.2021.2022544.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066. doi:10.1093/nar/gkf436.
  • Kim S, Kim H, Shin SC. 2016. Complete mitochondrial genome of the Antarctic midge Parochlus steinenii (Diptera: Chironomidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(5):3475–3476. doi:10.3109/19401736.2015.1066355.
  • Kong FQ, Zhao YC, Chen JL, Lin XL. 2021. First report of the complete mitogenome of Microchironomus tabarui Sasa, 1987 (Diptera, Chironomidae) from Hebei Province, China. Mitochondrial DNA B Resour. 6(10):2845–2846. doi:10.1080/23802359.2021.1970638.
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2017. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol Biol Evol. 34(3):772–773.
  • Lei T, Song C, Zhu XD, Xu BY, Qi X. 2021. The complete mitochondrial genome of a non-biting midge Polypedilum unifascium (Tokunaga, 1938) (Diptera: Chironomidae). Mitochondrial DNA B Resour. 6(8):2212–2213. doi:10.1080/23802359.2021.1945977.
  • Li SY, Zhao YM, Guo BX, Li CH, Sun BJ, Lin XL. 2022. Comparative analysis of mitogenomes of Chironomus (Diptera: Chironomidae). Insects. 13:1164. doi:10.3390/insects13121164.
  • Lin XL, Liu Z, Yan LP, Duan X, Bu WJ, Wang XH, Zheng CG. 2022. Mitogenomes provide new insights of evolutionary history of Boreheptagyiini and Diamesini (Diptera: Chironomidae: Diamesinae). Ecol Evol. 12(5):e8957. doi:10.1002/ece3.8957.
  • Lin X‐L, Zhao Y‐M, Yan L‐P, Liu W‐B, Bu W‐J, Wang X‐H, Zheng C‐G. 2022. Mitogenomes provide new insights into the evolutionary history of Prodiamesinae (Diptera: Chironomidae). Zool Scripta. 51(1):119–132. doi:10.1111/zsc.12516.
  • Liu C, Xu GN, Lei T, Qi X. 2022. The complete mitochondrial genome of a tropical midge Chironomus kiiensis Tokunaga, 1936 (Diptera: Chironomidae). Mitochondrial DNA B Resour. 7(1):211–212. doi:10.1080/23802359.2021.2018952.
  • Lowe TM, Chan PP. 2016. tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res. 44(W1):W54–W57. doi:10.1093/nar/gkw413.
  • Lu CC, Huang XL, Deng J. 2023. Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance. BMC Genomics. 24(1):37. doi:10.1186/s12864-023-09131-9.
  • Qi Y, Duan X, Jiao KL, Lin XL. 2022. First complete mitogenome of Axarus fungorum (Albu, 1980) from Guizhou Province, China (Diptera, Chironomidae). Mitochondrial DNA B Resour. 7(10):1807–1809. doi:10.1080/23802359.2022.2131369.
  • Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19(12):1572–1574. doi:10.1093/bioinformatics/btg180.
  • Vaidya G, Lohman DJ, Meier R. 2011. SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics. 27(2):171–180. doi:10.1111/j.1096-0031.2010.00329.x.
  • Xiao YL, Xu ZG, Wang JX, Fang XL, Fu Y. 2022. Complete mitochondrial genome of a Eurytopic midge, Polypedilum nubifer (Diptera: Chironomidae). Mitochondrial DNA B Resour. 7(11):1936–1938. doi:10.1080/23802359.2022.2122746.
  • Zhang RL, Song C, Qi X, Wang XH. 2016. Taxonomic review on the subgenus Tripodura Townes (Diptera: Chironomidae: Polypedilum) from China with eleven new species and a supplementary world checklist. Zootaxa. 4136(1):1–53. doi:10.11646/zootaxa.4136.1.1.
  • Zheng CG, Liu Z, Zhao YM, Wang Y, Bu WJ, Wang XH, Lin XL. 2022. First report on mitochondrial gene rearrangement in non-biting midges, revealing a synapomorphy in Stenochironomus Kieffer (Diptera: Chironomidae). Insects. 13:115. doi:10.3390/insects13020115.
  • Zheng CG, Zhu XX, Yan LP, Yao Y, Bu WJ, Wang XH, Lin XL. 2021. First complete mitogenomes of Diamesinae, Orthocladiinae, Prodiamesinae, Tanypodinae (Diptera: Chironomidae) and their implication in phylogenetics. PeerJ. 9:e11294. doi:10.7717/peerj.11294.