The complete plastid genome sequence of Lysidice brevicalyx (Fabaceae: Detarioideae), an arbor species endemic to China

References

• Aecyo P, Marques A, Huettel B, Silva A, Esposito T, Ribeiro E, Leal IR, Gagnon E, Souza G, Pedrosa-Harand A, et al. 2021. Plastome evolution in the Caesalpinia group (Leguminosae) and its application in phylogenomics and populations genetics. Planta J. 254(2):27. doi:10.1007/s00425-021-03655-8.
   PubMed Web of Science ®Google Scholar
• Agudelo ID, Aldaco G, Brito-Pizano A, Chavez KG, Cortina KG, Flores J, Fuentes A, Garcia AN, Garcia A, Gonzalez-Martinez D, et al. 2022. The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA. Mitochondrial DNA B Resour. 7(1):283–285. doi:10.1080/23802359.2022.2029605.
   PubMed Web of Science ®Google Scholar
• Demenou BB, Migliore J, Heuertz M, Monthe FK, Ojeda DI, Wieringa JJ, Dauby G, Albreht L, Boom A, Hardy OJ, et al. 2020. Plastome phylogeography in two African rain forest legume trees reveals that Dahomey Gap populations originate from the Cameroon volcanic line. Mol Phylogenet Evol. 150:106854. doi:10.1016/j.ympev.2020.106854.
   PubMed Web of Science ®Google Scholar
• Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
   Google Scholar
• Gao S, Liu J, Fu G-M, Hu Y-C, Yu S-S, Fan L-H, Yu D-Q, Qu J. 2007. Resveratrol/phloroglucinol glycosides from the roots of Lysidice rhodostegia. Planta Med. 73(2):163–166. doi:10.1055/s-2006-951770.
   PubMed Web of Science ®Google Scholar
• Hou CDZDD. 2010. Flora of China [M]. Beijing: Science Press.
   Google Scholar
• Jin J-J, Yu W-B, Yang J-B, Song Y, dePamphilis CW, Yi T-S, Li D-Z. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
   PubMed Web of Science ®Google Scholar
• Katoh K, Rozewicki J, Yamada KD. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform. 20(4):1160–1166. doi:10.1093/bib/bbx108.
   PubMed Web of Science ®Google Scholar
• Lai Q, Tu T, Zhang D. 2019a. The complete plastid genome of Zenia insignis Chun (Leguminosae). Mitochondrial DNA B Resour. 4(2):2926–2927. doi:10.1080/23802359.2019.1660266.
   PubMed Web of Science ®Google Scholar
• Lai Q, Zhu C, Gu S, Tu T, Zhang D. 2019b. Complete plastid genome of Suriana maritima L. (Surianaceae) and its implications in phylogenetic reconstruction of Fabales. J Genet. 98:109. doi:10.1007/s12041-019-1157-3.
   PubMed Web of Science ®Google Scholar
• Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
   PubMed Web of Science ®Google Scholar
• Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Von Haeseler A, Lanfear R. 2022. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 39(5):1530–1534. doi:10.1093/molbev/msaa015.
   Google Scholar
• Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73. doi:10.1093/nar/gkz345.
   PubMed Web of Science ®Google Scholar
• Shi Y, Liu B. 2019. Complete chloroplast genome sequence of Sophora japonica ‘JinhuaiJ2’ (Papilionaceae), an important traditional chinese herb. Mitochondrial DNA B Resour. 5(1):319–320. doi:10.1080/23802359.2019.1703588.
   PubMed Web of Science ®Google Scholar
• Tosso F, Hardy OJ, Doucet J-L, Daïnou K, Kaymak E, Migliore J. 2018. Evolution in the Amphi-Atlantic tropical genus Guibourtia (Fabaceae, Detarioideae), combining NGS phylogeny and morphology. Mol Phylogenet Evol. 120:83–93. doi:10.1016/j.ympev.2017.11.026.
   PubMed Web of Science ®Google Scholar
• Wang Y-H, Wicke S, Wang H, Jin J-J, Chen S-Y, Zhang S-D, Li D-Z, Yi T-S. 2018. Plastid genome evolution in the early-diverging Legume subfamily Cercidoideae (Fabaceae). Front Plant Sci. 9:138. doi:10.3389/fpls.2018.00138.
   PubMed Web of Science ®Google Scholar
• Wu X-F, Hu Y-C, Yu S-S, Jiang N, Ma J, Tan R-X, Li Y, Lv H-N, Liu J, Ma S-G, et al. 2010. Lysidicins F − H, Three New Phloroglucinols from Lysidice rhodostegia. Org Lett. 12(10):2390–2393. doi:10.1021/ol100735f.
   PubMed Web of Science ®Google Scholar
• Yang JB, Li DZ, Li HT. 2014. Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs. Mol Ecol Resour. 14(5):1024–1031. doi:10.1111/1755-0998.12251.
   PubMed Web of Science ®Google Scholar
• Yang L-M, Yin H, Zhang M-J, Zhang M, Huang X-F. 2019. Three new phenolic glycosides from the roots of Lysidice rhodostegia. Phytochem Lett. 33:125–128., doi:10.1016/j.phytol.2019.08.002.
   Web of Science ®Google Scholar
• Zhang J, Li Y, Heng S, Seab K, Wang Y. 2020a. The complete chloroplast genome sequence of Afzelia xylocarpa. Mitochondrial DNA B Resour. 5(1):762–763. doi:10.1080/23802359.2020.1715857.
   PubMed Web of Science ®Google Scholar
• Zhang R, Wang Y-H, Jin J-J, Stull GW, Bruneau A, Cardoso D, De Queiroz LP, Moore MJ, Zhang S-D, Chen S-Y, et al. 2020b. Exploration of plastid phylogenomic conflict yields new insights into the deep relationships of Leguminosae. Syst Biol. 69(4):613–622. doi:10.1093/sysbio/syaa013.
   Google Scholar
• Zhao Y, Zhang R, Jiang K-W, Qi J, Hu Y, Guo J, Zhu R, Zhang T, Egan AN, Yi T-S, et al. 2021. Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae. Mol Plant. 14(5):748–773. doi:10.1016/j.molp.2021.02.006.
   PubMed Web of Science ®Google Scholar