The complete mitochondrial genome of soft coral, Eleutherobia rubra (Brundin, 1896) (Cnidaria; Anthozoa; Malacalcyonacea; Alcyoniidae)

References

• Asahida T, Kobayashi T, Saitoh K, Nakayama I. 1996. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish Sci. 62(5):727–730. doi: 10.2331/fishsci.62.727.
   Web of Science ®Google Scholar
• Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
   PubMed Web of Science ®Google Scholar
• Edler D, Klein J, Antonelli A, Silvestro D, Matschiner M. 2021. raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Methods Ecol Evol. 12(2):373–377. doi: 10.1111/2041-210X.13512.
   Web of Science ®Google Scholar
• Figueroa DF, Baco AR. 2015. Octocoral mitochondrial genomes provide insights into the phylogenetic history of gene order rearrangements, order reversals, and cnidarian phylogenetics. Genome Biol Evol. 7(1):391–409. doi: 10.1093/gbe/evu286.
   Web of Science ®Google Scholar
• Frankham R. 2019. Conservation genetics. In: Fath B, editor. Encyclopedia of ecology. 2nd ed., Vol. 1. Amsterdam: Elsevier; p. 382–390.
   Google Scholar
• Garrabou J, Gómez‐Gras D, Medrano A, Cerrano C, Ponti M, Schlegel R, Bensoussan N, Turicchia E, Sini M, Gerovasileiou V, et al. 2022. Marine heatwaves drive recurrent mass mortalities in the Mediterranean Sea. Glob Change Biol. 28(19):5708–5725. doi: 10.1111/gcb.16301.
   PubMed Web of Science ®Google Scholar
• Hoban S, Bruford MW, da Silva JM, Funk WC, Frankham R, Gill MJ, Grueber CE, Heuertz M, Hunter ME, Kershaw F, et al. 2023. Genetic diversity goals and targets have improved, but remain insufficient for clear implementation of the post-2020 global biodiversity framework. Conserv Genet. 24(2):181–191. doi: 10.1007/s10592-022-01492-0.
   PubMed Web of Science ®Google Scholar
• Hughes TP, Kerry JT, Álvarez-Noriega M, Álvarez-Romero JG, Anderson KD, Baird AH, Babcock RC, Beger M, Bellwood DR, Berkelmans R, et al. 2017. Global warming and recurrent mass bleaching of corals. Nature. 543(7645):373–377. doi: 10.1038/nature21707.
   PubMed Web of Science ®Google Scholar
• Imahara Y, Iwase F, Namikawa H. 2014. The octocorals of Sagami bay. Tokyo, Japan: Tokai University Press; p. 1–398.
   Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi: 10.1093/molbev/mst010.
   PubMed Web of Science ®Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi: 10.1093/bioinformatics/bts199.
   PubMed Web of Science ®Google Scholar
• Kessel GM, Alderslade P, Bilewitch JP, Schnabel KE, Gardner JP. 2023. The use of integrative taxonomy in Octocorallia (Cnidaria: Anthozoa): a literature survey. Zool J Linn Soc. 198(2):677–690. doi: 10.1093/zoolinnean/zlac099.
   Web of Science ®Google Scholar
• Kliman R, Sheehy B, Schultz J. 2008. Genetic drift and effective population size. Nat Educ. 1(3):3.
   Google Scholar
• Lam AR, MacLeod KG, Schilling SH, Leckie RM, Fraass AJ, Patterson MO, Venti NL. 2021. Pliocene to earliest Pleistocene (5–2.5 Ma) reconstruction of the Kuroshio Current Extension reveals a dynamic current. Paleoceanogr Paleoclimatol. 36(9):e2021PA004318.
   Web of Science ®Google Scholar
• Lee NY, Yum SS, Woo SO. 2020. Differentially expressed genes of octocoal, Eleutherobia rubra against heat stress and the local environment. PICES-2020 Virtual Annual Meeting [online]. PICES. https://sciwatch.kiost.ac.kr/handle/2020.kiost/37662.
   Google Scholar
• Lee NY, Jo YJ, Woo SO. 2023. Symbiotic communication of octocoral, Eleutherobia rubra responding to environmental stress. EMBL Symposium. EMBL; p. 75. https://sciwatch.kiost.ac.kr/handle/2020.kiost/43981.
   Google Scholar
• Lee S, Park MS, Kwon M, Park YG, Kim YH, Choi N. 2023. Rapidly changing East Asian marine heatwaves under a warming climate. JGR Oceans. 128(6):e2023JC019761. doi: 10.1029/2023JC019761.
   Web of Science ®Google Scholar
• McFadden CS, van Ofwegen LP, Quattrini AM. 2022. Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics. Bull Soc Syst Biol. 1(3):е8735.
   Google Scholar
• McGowan H, Theobald A. 2023. Atypical weather patterns cause coral bleaching on the Great Barrier Reef, Australia during the 2021–2022 La Niña. Sci Rep. 13(1):6397. doi: 10.1038/s41598-023-33613-1.
   PubMed Web of Science ®Google Scholar
• Muthye V, Mackereth CD, Stewart JB, Lavrov DV. 2022. Large dataset of octocoral mitochondrial genomes provides new insights into mt-mutS evolution and function. DNA Repair. 110:103273. doi: 10.1016/j.dnarep.2022.103273.
   PubMed Web of Science ®Google Scholar
• [NCBI] National Center for Biotechnology Information [Internet]. 2023. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1988] – [accessed Jul 25]. https://www.ncbi.nlm.nih.gov/.
   Google Scholar
• Sasaki YN, Umeda C. 2021. Rapid warming of sea surface temperature along the Kuroshio and the China coast in the East China Sea during the twentieth century. J Clim. 34(12):4803–4815. doi: 10.1175/JCLI-D-20-0421.1.
   Web of Science ®Google Scholar
• Song JI. 1976. A study on the classification of the Korean Anthozoa: 2. Alcyonacea. Korean J Syst Zool. 19(2):51–62.
   Google Scholar
• Verseveldt J, Bayer FM. 1988. Revision of the Genera Bellonella, Eleutherobia, Nidalia and Nidaliopsis (Octocorallia: Alcyoniidae and Nidalliidae), with descriptions of two new Genera. Zool Verh. 245(1):1–131.
   Google Scholar
• Wang YL, Wu CR, Chao SY. 2016. Warming and weakening trends of the Kuroshio during 1993–2013. Geophys Res Lett. 43(17):9200–9207. doi: 10.1002/2016GL069432.
   Web of Science ®Google Scholar
• Wang YL, Wu CR. 2022. Rapid surface warming of the Pacific Asian marginal seas since the late 1990s. JGR Oceans. 127(12):e2022JC018744. doi: 10.1029/2022JC018744.
   Web of Science ®Google Scholar
• WoRMS Editorial Board. 2023. World register of marine species. VLIZ; [accessed 2023 Jul 27]. https://www.marinespecies.org.
   Google Scholar
• Wan S, Xiang R, Steinke S, Du Y, Yang Y, Wang S, Wang H. 2023. Impact of the Western Pacific Warm pool and Kuroshio dynamics in the Okinawa Trough during the Holocene. Glob Planet Change. 224:104116. doi: 10.1016/j.gloplacha.2023.104116.
   Web of Science ®Google Scholar