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Mitogenome Announcement

The complete mitogenome of the Mugil cephalus (Mugiliformes: Mugilidae) from the Yellow Sea, China

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Pages 1234-1238 | Received 04 Oct 2022, Accepted 31 Oct 2023, Published online: 30 Nov 2023

References

  • Durand JD, Shen KN, Chen WJ, Jamandre BW, Blel H, Diop K, Nirchio M, Garcia de León FJ, Whitfield AK, Chang CW, et al. 2012. Systematics of the grey mullets (Teleostei: Mugiliformes: Mugilidae): molecular phylogenetic evidence challenges two centuries of morphology-based taxonomy. Mol Phylogenet Evol. 64(1):73–92. doi:10.1016/j.ympev.2012.03.006.
  • Harrison IJ, Howes GJ. 1991. The pharyngobranchial organ of mugilid fishes; its structure, variability, ontogeny, possible function and taxonomic utility. Bull Brit Mus Nat Hist Zool. 57:111–132.
  • Jin JJ, Yu WB, Yang JB, Song Y, Claude W, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
  • Miya M, Kawaguchi A, Nishida M. 2001. Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol Biol Evol. 18(11):1993–2009. doi:10.1093/oxfordjournals.molbev.a003741.
  • Rambaut A, Drummond A. 2005. Tracer-MCMC Trace Analysis Tool V.1.3. http://tree.bio.ed.ac.uk/software/tracer/.
  • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16(6):276–277. doi:10.1016/s0168-9525(00)02024-2.
  • Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. doi:10.1093/sysbio/sys029.
  • Shen KN, Chen CH, Hsiao CD, Durand JD. 2016. Next-generation sequencing yields the complete mitochondrial genome of the flathead mullet, Mugil cephalus cryptic species in East Australia (Teleostei: Mugilidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(5):3218–3219. doi:10.3109/19401736.2015.1007354.
  • Shen KN, Jamandre BW, Hsu CC, Tzeng WN, Durand JD. 2011. Plio-Pleistocene sea level and temperature fluctuations in the northwestern Pacific promoted speciation in the globally-distributed flathead mullet Mugil cephalus. BMC Evol Biol. 11(1):83. doi:10.1186/1471-2148-11-83.
  • Sun YN, Xu TJ. 2018. Complete mitochondrial genome of Caranx equula (Perciformes, Carangidae): genome characterization and phylogenetic analysis. Mitochondrial DNA B Resour. 3(2):786–787. doi:10.1080/23802359.2018.1491333.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25(24):4876–4882.
  • Wataru I, Tsukasa F, Ryota I, Koichiro Y, Yasunobu M, Takashi PS, Tetsuya S, Kohji M, Hirohiko T, Masaki M, et al. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Phylogenet Evol. 30:2531–2540.
  • Whitfield AK, Panfili J, Durand JD. 2012. A global review of the cosmopolitan flathead mullet Mugil cephalus Linnaeus, 1758 (Teleostei: Mugilidae), with emphasis on the biology, genetics, ecology and fisheries aspects of this apparent species complex. Rev Fish Biol Fisheries. 22(3):641–681. doi:10.1007/s11160-012-9263-9.
  • Yang CZ, Xiang C, Qi W, Xia S, Tu F, Zhang X, Moermond T, Yue B. 2013. Phylogenetic analyses and improved resolution of the family Bovidae based on complete mitochondrial genomes. Biochem Syst Ecol. 48:136–143. doi:10.1016/j.bse.2012.12.005.
  • Zhang ZC, Cheng QQ, Ge YH. 2019. The complete mitochondrial genome of Rhynchocypris oxycephalus (Teleostei: Cyprinidae) and its phylogenetic implications. Ecol Evol. 9(13):7819–7837. doi:10.1002/ece3.5369.