The complete mitochondrial genome of the Tanichthys flavianalis (Cypriniformes: Tanichthyidae) and its phylogeny

References

• Billington N, Hebert PD. 1991. Mitochondrial DNA diversity in fishes and its implications for introductions. Can J Fish Aquat Sci. 48(S1):80–94. doi: 10.1139/f91-306.
   Web of Science ®Google Scholar
• Bohlen J, Dvořák T, Thang HN, Šlechtová V. 2019. Tanichthys kuehnei, new species, from Central Vietnam (Cypriniformes: Cyprinidae). Ichthyol Explor Freshw. 1081:1–10.
   Google Scholar
• Chen YY. 1998. Fauna Sinica, Osteichthyes, Cypriniformes II. Beijing: Science Press. (in Chinese with English abstract)
   Google Scholar
• Chen WJ, Mayden RL. 2009. Molecular systematics of the Cyprinoidea (Teleostei: Cypriniformes), the world’s largest clade of freshwater fishes: further evidence from six nuclear genes. Mol Phylogenet Evol. 52(2):544–549. doi: 10.1016/j.ympev.2009.01.006.
   PubMed Web of Science ®Google Scholar
• Chu YT. 1935. Comparative studies on the scales and on the pharyngeals and their teeth in Chinese cyprinids, with particular reference to taxonomy and evolution. Biol Bull St. John’s Univ Shanghai. 2:1–225.
   Google Scholar
• Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. 2019. Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Res. 47(20):10543–10552. doi: 10.1093/nar/gkz833.
   PubMed Web of Science ®Google Scholar
• Freyhof J, Herder F. 2021. Tanichthys micagemmae, a new miniature cyprinid fish from Central Vietnam (Cypriniformes: Cyprinidae). Ichthyol Explor Freshw. 12:215–220.
   Google Scholar
• Froese R, Pauly D. Editors. 2023. FishBase. World Wide Web electronic publication. www.fishbase.org, version (02/2023).
   Google Scholar
• Jin J, Li C, Zhao J. 2022. Descriptions of six new species in White Cloud Mountain minnow Tanichthys albonubes complex (Cypriniformes: Tanichthyidae) in southern China. J Fish Biol. 100(4):1062–1087. doi: 10.1111/jfb.15012.
   PubMed Web of Science ®Google Scholar
• Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi: 10.1038/nmeth.4285.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi: 10.1093/molbev/mst010.
   PubMed Web of Science ®Google Scholar
• Letunic I, Bork P. 2019. Interactive tree of life (itol) v4: recent updates and new developments. Nucleic Acids Res. 47(W1):W256–W259. doi: 10.1093/nar/gkz239.
   PubMed Web of Science ®Google Scholar
• Li F, Liao T-Y, Bohlen J, Shen Z-X, Zhao L-J, Li S. 2022. Two new species of Tanichthys (Teleostei: Cypriniformes) from China. J Verteb Biol. 71(21067):1–13.
   Google Scholar
• Liao TY, Ünlü E, Kullander SO. 2011. Western boundary of the subfamily Danioninae in Asia (Teleostei, Cyprinidae): derived from the systematic position of Barilius mesopotamicus based on molecular and morphological data. Zootaxa. 2880(1):31–40. doi: 10.11646/zootaxa.2880.1.3.
   Google Scholar
• Liaw NHJ, Tsai CL, Watanabe K. 2013. Complete mitochondrial genome of the Kikuchi’s minnow Aphyocypris kikuchii (Teleostei, Cyprinidae). Mitochondiral DNA. 24(1):11–13. doi: 10.3109/19401736.2012.710227.
   PubMedGoogle Scholar
• Lin S-Y. 1932. New cyprinid fishes from white cloud mountain, Canton. Lingnan Sci J. 11:379–383.
   Google Scholar
• Luo F, Luo T, Huang J, Liu X, Ling S, Wen Y. 2019. Characterization of complete mitochondrial genome of Aphyocypris pulchrilineata (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA B. 4(1):1267–1268. doi: 10.1080/23802359.2019.1591221.
   Web of Science ®Google Scholar
• Mayden RL, Chen WJ. 2010. The world’s smallest vertebrate species of the genus Paedocypris: a new family of freshwater fishes and the sister group to the world’s most diverse clade of freshwater fishes (Teleostei: Cypriniformes). Mol Phylogenet Evol. 57(1):152–175. doi: 10.1016/j.ympev.2010.04.008.
   PubMed Web of Science ®Google Scholar
• Nelson JS, Grande TC, Wilson MVH. 2016. Fishes of the world, 5th ed. New Jersey: John Wiley & Sons.
   Google Scholar
• Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi: 10.1093/molbev/msu300.
   PubMed Web of Science ®Google Scholar
• Nguyễn VH, Ngô SV. 2001. Freshwater fishes of Vietnam, vol. 1. Hanoi, Vietnam: Family Cyprinidae. Aquaculture Publishing House. (in Vietnamese)
   Google Scholar
• Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. doi: 10.1093/sysbio/sys029.
   PubMed Web of Science ®Google Scholar
• Saitoh K, Sado T, Mayden RL, Hanzawa N, Nakamura K, Nishida M, Miya M. 2006. Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world’s largest freshwater fish clade based on 59 whole mitogenome sequences. J Mol Evol. 63(6):826–841. doi: 10.1007/s00239-005-0293-y.
   PubMed Web of Science ®Google Scholar
• Satoh TP, Miya M, Mabuchi K, Nishida N. 2016. Structure and variation of the mitochondrial genome of fishes. BMC Genomics. 17(1):719. doi: 10.1186/s12864-016-3054-y.
   PubMed Web of Science ®Google Scholar
• Stothard P, Wishart DS. 2005. Circular genome visualization and exploration using CGView. Bioinformatics. 21(4):537–539. doi: 10.1093/bioinformatics/bti054.
   PubMed Web of Science ®Google Scholar
• Tang KL, Agnew MK, Vincent Hirt M, Sado T, Schneider LM, Freyhof J, Sulaiman Z, Swartz E, Vidthayanon C, Miya M, et al. 2010. Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol. 57(1):189–214. doi: 10.1016/j.ympev.2010.05.021.
   PubMed Web of Science ®Google Scholar
• Weitzman SH, Chan LL. 1966. Identification and relationships of Tanichthys albonubes and Aphyocypris pooni, two cyprinid fishes from South China and Hong Kong. Copeia. 1966(2):285–296. doi: 10.2307/1441136.
   Google Scholar
• Xiang C-Y, Gao F, Jakovlić I, Lei H-P, Hu Y, Zhang H, Zou H, Wang G-T, Zhang D. 2023. Using PhyloSuite for molecular phylogeny and tree-based analyses. iMeta. 2(1):e87. doi: 10.1002/imt2.87.
   Google Scholar
• Yang GR, Huang JH. 1964. Leuciscinae. In: Wu HW, Yang GR, Huang HJ, editors. Cyprinid fishes of China, vol 1. Shanghai: shanghai Science Technology Press. (in Chinese)
   Google Scholar
• Yang T, Tan C, Sun W, Li D, Zhao L, Li F. 2023. Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis. Mitochondrial DNA B Resour. 8(2):207–210. doi: 10.1080/23802359.2023.2171244.
   PubMed Web of Science ®Google Scholar
• Yue PQ, Chen YY. 1998. China red data book of endangered animals: Pisces. Beijing: science Press.
   Google Scholar
• Zhang Z, Li S, Zhang J, Song W, Yang J, Mu J. 2021. The complete mitochondrial genome of an endangered minnow Aphyocypris lini (Cypriniformes: Xenocyprididae): genome characterization and phylogenetic consideration. Biologia. 76(11):3311–3321. doi: 10.1007/s11756-021-00811-z.
   Web of Science ®Google Scholar