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Mitochondrial DNA Part B
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Volume 9, 2024 - Issue 2
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Plastome Report

The complete chloroplast genome of Pulsatilla chinensis f. alba D. K. Zang (Ranunculaceae, Pulsatilla Miller)

Che BianSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaView further author information
,
Yan-ping XingSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaView further author information
,
He-fei XueSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaView further author information
,
Wen-juan HouSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaView further author information
,
Yan-yun YangSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaCorrespondence[email protected]
View further author information
,
Liang XuSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaCorrespondence[email protected]
View further author information
&
Ting-guo KangSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, ChinaView further author information
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Pages 233-236 | Received 01 Aug 2023, Accepted 09 Dec 2023, Published online: 31 Jan 2024

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Feng SL. 2009. Research on method of the construction of phylogenetic trees. Inform Technol. 33(6):38–40 + 44.
  • He J, Yao M, Lyu RD, Lin LL, Liu HJ, Pei LY, Yan SX, Xie L, Cheng J. 2019. Structural variation of the complete chloroplast genome and plastid phylogenomics of the genus Asteropyrum (Ranunculaceae). Sci Rep. 9(1):15285. doi: 10.1038/s41598-019-51601-2.
  • Kalyaanamoorthy S, Minh BQ, Wong TK, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi: 10.1038/nmeth.4285.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv: Genomics. (0):3.
  • Liang YT, Zang DK, Ren YG. 1993. Two new forms of Pulsatilla chinensis (Bunge) Regel from Shandong. Bull Entomol Res. 13(4):340–341.
  • Li H, Handsaker B, Wysoker A, Fennel T, Ruan J, Homer N, Marth G, Abecasis GC, Durbin R. 2009. The sequence alignment/Map format and SAMtools. Bioinformatics. 25(16):2078–2079. doi: 10.1093/bioinformatics/btp352.
  • Li Y, Lin CY. 2005. A summary of the chemical constituents and activities of the Pulsatilla. Tianjin J Tradition Chinese Med. 22(06):526–528.
  • Li QJ, Su N, Zhang L, Tong RC, Zhang XH, Wang JR, Chang ZY, Zhao L, Potter D. 2020. Chloroplast genomes elucidate diversity, phylogeny, and taxonomy of Pulsatilla (Ranunculaceae). Sci Rep. 10(1):19781. doi: 10.1038/s41598-020-76699-7.
  • Liu HJ, He J, Ding CH, Lyu R, Pei LY, Cheng J, Xie L. 2018. Comparative analysis of complete chloroplast genomes of Anemoclema, Anemone, Pulsatilla, and Hepatica revealing structural variations among Genera in Tribe Anemoneae (Ranunculaceae). Front Plant Sci. 9:1097. doi: 10.3389/fpls.2018.01097.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 0:1–11.
  • National Pharmacopoeia Commissions. 2020. Chinese pharmacopoeia. Beijing: China Medical Science and Technology Press; p. 108.
  • Patel RK, Jain M. 2015. NGS QC Toolkit: a platform for quality control of next-generation sequencing data. In: Nelson K, editor. Encyclopedia of metagenomics. New York, NY: Springer.
  • Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):50. doi: 10.1186/s13007-019-0435-7.
  • Xue HF, Song YY, Yang YY, Bian C, Xu L, Kang TG. 2022. The complete chloroplast genome of Pulsatilla campanella Fischer ex Krylov. (Ranunculaceae, Pulsatilla Miller). Mitochondrial DNA B Resour. 7(6):1126–1128. doi: 10.1080/23802359.2022.2087556.
  • Zhai W, Duan X, Zhang R, Guo C, Li L, Xu G, Shan H, Kong H, Ren Y. 2019. Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae. Mol Phylogenet Evol. 135:12–21. doi: 10.1016/j.ympev.2019.02.024.
  • Zhang W, Jiang H, Yang J, Song G, Wen D, Liu W, Jin M, Wang Q, Du Y, Sun Q, et al. 2019. A high-throughput metabolomics approach for the comprehensive differentiation of four Pulsatilla Adans herbs combined with a nontargeted bidirectional screen for rapid identification of triterpenoid saponins. Anal Bioanal Chem. 411(10):2071–2088. doi: 10.1007/s00216-019-01631-6.
  • Zhang NN, Lu Y, Zhang ZQ. 2021. The complete chloroplast genome sequence of Anemone reflexa (Ranunculaceae). Mitochondrial DNA B Resour. 6(2):304–305. doi: 10.1080/23802359.2020.1860710.
  • Zhang T, Xing Y, Xu L, Bao G, Zhan Z, Yang Y, Wang J, Li S, Zhang D, Kang T. 2019. Comparative analysis of the complete chloroplast genome sequences of six species of Pulsatilla Miller, Ranunculaceae. Chin Med. 14(1):53. doi: 10.1186/s13020-019-0274-5.

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