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Mitochondrial DNA Part B
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Volume 9, 2024 - Issue 1
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Plastome Report

The complete plastid genome of Rhamnus leptacantha Schneid. (Rhamnaceae)

Guiyun Huanga Yangtze River Biodiversity Center, Yangtze River Ecological Environment Engineering Research Center, China Three Gorges Corporation Ltd, Yichang, Hubei, ChinaView further author information
,
Linbao Lia Yangtze River Biodiversity Center, Yangtze River Ecological Environment Engineering Research Center, China Three Gorges Corporation Ltd, Yichang, Hubei, ChinaView further author information
,
Xiongying Wanga Yangtze River Biodiversity Center, Yangtze River Ecological Environment Engineering Research Center, China Three Gorges Corporation Ltd, Yichang, Hubei, ChinaView further author information
,
Lanfang Yanga Yangtze River Biodiversity Center, Yangtze River Ecological Environment Engineering Research Center, China Three Gorges Corporation Ltd, Yichang, Hubei, ChinaView further author information
,
Yeqing Wangb Hubei Wufeng Houhe National Nature Reserve Administration Science Research Institute, Yichang, Hubei, ChinaView further author information
,
Di Wua Yangtze River Biodiversity Center, Yangtze River Ecological Environment Engineering Research Center, China Three Gorges Corporation Ltd, Yichang, Hubei, ChinaCorrespondence[email protected]
View further author information
&
Jinhua Wua Yangtze River Biodiversity Center, Yangtze River Ecological Environment Engineering Research Center, China Three Gorges Corporation Ltd, Yichang, Hubei, ChinaCorrespondence[email protected]
View further author information
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Pages 33-36 | Received 05 Sep 2023, Accepted 22 Dec 2023, Published online: 03 Jan 2024

References

  • Amiryousefi A, Hyvönen J, Poczai P. 2018. IRscope: an online program to visualize the junction sites of chloroplast genomes. Bioinformatics. 34(17):3030–3031. doi:10.1093/bioinformatics/bty220.
  • Brunello F. 1973. The art of dyeing in the history of mankind. Vincenza, Italy: Neri Pozza Editore; p. 381.
  • Chen YL, Zhou BK. 1982. Rhamnus. In: Chen YL, editor. Flora of China. Vol. 48(1). Beijing & Missouri Botanical Garden, St. Louis: Science Press; p. 019.
  • Darling ACE, Mau B, Blattner FR, Perna NT. 2004. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14(7):1394–1403. doi:10.1101/gr.2289704.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19(1):11–15.
  • Jin J-J, Yu W-B, Yang J-B, Song Y, dePamphilis CW, Yi T-S, Li D-Z. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, Haeseler AV, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi:10.1038/nmeth.4285.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079. doi:10.1093/bioinformatics/btp352.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv:1303.3997. Available from: http://arxiv.org/abs/1303.3997.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
  • Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Meth. 15(1):50. doi:10.1186/s13007-019-0435-7.
  • Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot. 94(3):275–288. doi:10.3732/ajb.94.3.275.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):65–73.
  • Yu H, Ye HG, Xia NH. 2008. Taxonomic treatment of Chinese Frangula Mill. (Rhamnaceae). J Trop Subtrop Bot. 16(4):366–369.

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