306
Views
0
CrossRef citations to date
0
Altmetric
Plastome Report

The complete chloroplast genome sequence of Thladiantha nudiflora Hemsl. ex F.B.Forbes & Hemsl. 1887 (Cucurbitaceae)

ORCID Icon, , , &
Pages 138-142 | Received 20 Feb 2023, Accepted 09 Jan 2024, Published online: 25 Jan 2024

References

  • Anh NV, Victor D, Anh VTN, Ludmina D, Phuong DTL, Olga K. 2020. Thladiantha seed oils – new source of conjugated fatty acids: characterization of triacylglycerols and fatty acids. J Oleo Sci. 69(9):993–1000. doi:10.5650/jos.ess20075.
  • Barrera-Redondo J, Lira-Saade R, Eguiarte LE. 2020. Gourds and tendrils of Cucurbitaceae: how their shape diversity, molecular and morphological novelties evolved via whole-genome duplications. Mol Plant. 13(8):1108–1110. doi:10.1016/j.molp.2020.06.012.
  • Bellot S, Mitchell TC, Schaefer H. 2020. Phylogenetic informativeness analyses to clarify past diversification processes in Cucurbitaceae. Sci Rep. 10(1):488. doi:10.1038/s41598-019-57249-2.
  • Cai L, Pan R, Zeng Q, Zhang X, Zeng R, Zhu Q. 2023. The complete plastome sequence of Momordica cochinchinensis (Cucurbitaceae). Mitochondrial DNA B Resour. 8(3):329–332. doi:10.1080/23802359.2023.2181649.
  • Jin JJ, Yu WB, Yang JB, Song Y, dePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi:10.1038/nmeth.4285.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
  • Nie RL, Tanaka T, Miyakoshi M, Kasai R, Morita T, Zhou J, Tanaka O. 1989. A triterpenoid saponin from Thladiantha hookeri var. pentadactyla. Phytochemistry. 28(6):1711–1715. doi:10.1016/S0031-9422(00)97830-0.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. doi:10.1093/sysbio/sys029.
  • Schaefer H, Heibl C, Renner SS. 2009. Gourds afloat: a dated phylogeny reveals an Asian origin of the gourd family (Cucurbitaceae) and numerous oversea dispersal events. Proc Biol Sci. 276(1658):843–851. doi:10.1098/rspb.2008.1447.
  • Shi H, Yang M, Mo C, Xie W, Liu C, Wu B, Ma X. 2019. Complete chloroplast genomes of two Siraitia Merrill species: comparative analysis, positive selection and novel molecular marker development. PLoS One. 14(12):e0226865. doi:10.1371/journal.pone.0226865.
  • Wang C, Wang X, Tseringand T, Song Y, Zhu R. 2020. The plastid genome of Herpetospermum pedunculosum (Cucurbitaceae), an endangered traditional Tibetan medicinal herbs. Mitochondrial DNA B Resour. 5(1):495–497. doi:10.1080/23802359.2019.1703603.
  • Wang L, Zhao D, Di L, Cheng D, Zhou X, Yang X, Liu Y. 2011. The anti-hyperplasia of mammary gland effect of Thladiantha dubia root ethanol extract in rats reduced by estrogen and progestogen. J Ethnopharmacol. 134(1):136–140. doi:10.1016/j.jep.2010.11.071.
  • Xu Z, Le C. 2017. Identification and control of common weeds. Vol. 3. Hangzhou: Zhejiang University Press.
  • Yundaeng C, Nawae W, Naktang C, Shearman JR, Sonthirod C, Sangsrakru D, Yoocha T, Jomchai N, Sheedy JR, Mekiyanon S, et al. 2020. Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships. Data Brief. 33:106470. doi:10.1016/j.dib.2020.106470.
  • Zeng CX, Hollingsworth PM, Yang J, He ZS, Zhang ZR, Li DZ, Yang JB. 2018. Genome skimming herbarium specimens for DNA barcoding and phylogenomics. Plant Methods. 14(1):43. doi:10.1186/s13007-018-0300-0.