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Plastome Report

The complete chloroplast genome of Dendrocalamus liboensis Hsueh & D. Z. Li 1985 and its phylogenetic analysis

ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon & ORCID Icon
Pages 158-162 | Received 09 Aug 2023, Accepted 11 Jan 2024, Published online: 24 Jan 2024

References

  • Deng LX, Wang ZJ. 2006. Study on the resources of primary bamboos and their ornamental characteristics in Guizhou province. Guizhou Forest Sci Technol. 01:48–54. CNKI:SUN:GZLY.0.2006-01-014.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15. doi:10.1016/S0021-9258(18)50745-6.
  • Du XC, Ran JC, Ou ZX, Lan HB. 2009. Utilization status and protection measures of wild vegetable resources in Libo county. J Hebei Agric Sci. 13(08):15–18. doi:10.16318/j.cnki.hbnykx.2009.08.035.
  • Du YP, Bi Y, Yang FP, Zhang MF, Chen XQ, Xue J, Zhang XH. 2017. Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses. Sci Rep. 7(1):5751. doi:10.1038/s41598-017-06210-2.
  • Hu XP, Wei TL, Zhu X, Dai ZX. 2022. Population status and protection evaluation of endemic bamboo species Indocalamus hirsutissimus in Wangmo county. J Mountain Agric Biol. 41:67–70. doi:10.15958/j.cnki.sdnyswxb.2022.04.010.
  • Jin JJ, Yu WB, Yang JB, Song Y, DePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Kearse M, Moir R, Wilson A, Amy W, Stones HS, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
  • Li DZ, Hsueh CJ. 1988. A study on the genus Dendrocalamus nees from China. J Bamboo Res. 03:1–19. doi:CNKI:SUN:ZZYJ.0.1988-03-000.
  • Li J, Tang J, Zeng S, Han F, Yuan J, Yu J. 2021. Comparative plastid genomics of four Pilea (Urticaceae) species: insight into interspecific plastid genome diversity in Pilea. BMC Plant Biol. 21(1):25. doi:10.1186/s12870-020-02793-7.
  • Liu JX, Zhou MY, Yang GQ, Zhang YX, Ma PF, Guo C, Vorontsova MS, Li DZ. 2020. ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae). Mol Phylogenet Evol. 146:106758. doi:10.1016/j.ympev.2020.106758.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
  • Nguyen LT, Schmidt HA, Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and efective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
  • Pei JL, Wang Y, Zhuo J, Gao HB, Vasupalli N, Hou D, Lin XC. 2022. Complete chloroplast genome features of Dendrocalamus farinosus and its comparison and evolutionary analysis with other Bambusoideae species. Genes (Basel). 13(9):1519. doi:10.3390/genes13091519.
  • Qu X-J, Moore MJ, Li D-Z, Yi T-S. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):50. doi:10.1186/s13007-019-0435-7.
  • Wang Y, Yuan XL, Li YQ, Zhang JF. 2019. The complete chloroplast genome sequence of Dendrocalamus sinicus. Mitochondrial DNA B Resour. 4(2):2988–2989. doi:10.1080/23802359.2019.1664947.
  • Wu ML, Wei TL, Liu YJ, Zhu X, Dai ZX. 2022. The current situation of the wild resources of the endemic species of Chimonobambusa lactistriata in Guizhou. J Mountain Agric Biol. 41:64–68. doi:10.15958/j.cnki.sdnyswxb.2022.03.009.
  • Yang HQ, Yang JB, Peng ZH, Gao J, Yang YM, Peng S, Li DZ. 2008. A molecular phylogenetic and fruit evolutionary analysis of the major groups of the paleotropical woody bamboos (Gramineae: Bambusoideae) based on nuclear ITS, GBSSI gene and plastid trnL-F DNA sequences. Mol Phylogenet Evol. 48(3):809–824. doi:10.1016/j.ympev.2008.06.001.
  • Zhang YJ, Ma PF, Li DZ. 2011. High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). PLoS One. 6(5):e20596. doi:10.1371/journal.pone.0020596.
  • Zhong HM, Gou GS, Liu YJ, Zhu X, Dai ZX. 2021. Population status and protection evaluation of endemic bamboo species Ampelocalamus Scandens in Chishui river watershed. J Mountain Agric Biol. 40:71–74. doi:10.15958/j.cnki.sdnyswxb.2021.0.