226
Views
0
CrossRef citations to date
0
Altmetric
MitoGenome Report

The complete mitochondrial genome of Aegialites californicus (Motchoulsky, 1845) (insecta: coleoptera: salpingidae)

Pages 214-218 | Received 08 Aug 2023, Accepted 18 Jan 2024, Published online: 30 Jan 2024

References

  • Cameron SL. 2014. Insect mitochondrial genomics: implications for evolution and phylogeny. Annu Rev Entomol. 59(1):95–117. doi:10.1146/annurev-ento-011613-162007.
  • Danecek P, Bonfield JK, Liddle J, Marshall J, Ohan V, Pollard MO, Whitwham A, Keane T, McCarthy SA, Davies RM, et al. 2021. Twelve years of SAMtools and BCFtools. Gigascience. 10(2):giab008. doi:10.1093/gigascience/giab008.
  • Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. 2019. Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Res. 47(20):10543–10552. doi:10.1093/nar/gkz833.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792–1797. doi:10.1093/nar/gkh340.
  • Hojito S, Kobayashi N, Katakura H. 2010. Population structure of Aegialites beetles (Coleoptera, Salpingidae) on the coasts of Hokkaido, Northern Japan. Zoolog Sci. 27(9):723–728. doi:10.2108/zsj.27.723.
  • Hu F-S, Pollock DA, Telnov D. 2020. Comparative morphology of immature Trictenotoma formosana Kriesche, 1919 and systematic position of the Trictenotomidae (Coleoptera, Tenebrionoidea). European J Taxon. 640:1–22. doi:10.5852/ejt.2020.640.
  • Hunter JD. 2007. Matplotlib: a 2D graphics environment. Comput Sci Eng. 9(3):90–95. doi:10.1109/MCSE.2007.55.
  • Kück P, Longo G. 2014. FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies. Front Zool. 11(1):81. doi:10.1186/s12983-014-0081-x.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874. doi:10.1093/molbev/msw054.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9(4):357–359. doi:10.1038/nmeth.1923.
  • Liu H, Yuan L, Wang P, Pan Z, Tong J, Wu G, Yang Y. 2023. First record of osphya (Melandryidae: osphyinae) from Chinese mainland based on morphological evidence and mitochondrial genome-based phylogeny of tenebrionoidea. Diversity. 15(2):282. doi:10.3390/d15020282.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi:10.1093/molbev/msaa015.
  • Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. 2017. metaSPAdes: a new versatile metagenomic assembler. Genome Res. 27(5):824–834. doi:10.1101/gr.213959.116.
  • Sheng L, Zhou T, Shi Z, Pan X, Weng X, Ma J, Wu S. 2021. The complete mitochondrial genome of Trictenotoma davidi Deyrolle, 1875 (Coleoptera: Trictenotomidae). Mitochondrial DNA B Resour. 6(7):2026–2027. doi:10.1080/23802359.2021.1942266.
  • Smith AD, Kamiński MJ, Kanda K, Sweet AD, Betancourt JL, Holmgren CA, Hempel E, Alberti F, Hofreiter M. 2021. Recovery and analysis of ancient beetle DNA from subfossil packrat middens using high-throughput sequencing. Sci Rep. 11(1):12635. doi:10.1038/s41598-021-91896-8.
  • Spilman TJ. 1967. The heteromerous intertidal beetles (Coleoptera: salipingidae: aegialitinae). Pacific Insects. 9(1):1–21.
  • Zerche L. 2004. Revision der Gattung Aegialites Mannerheim (Coleoptera: salpingidae: aegialitinae). Stuttgarter Beiträge Zur Naturkunde, Serie A (Biologie). 666:1–116.
  • Zheng S, Poczai P, Hyvönen J, Tang J, Amiryousefi A. 2020. Chloroplot: an online program for the versatile plotting of organelle genomes. Front Genet. 11:576124. doi:10.3389/fgene.2020.576124.