Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 9, 2024 - Issue 3
Submit an article Journal homepage
933
Views
0
CrossRef citations to date
0
Altmetric
Plastome Report

The complete chloroplast genome sequence of Ammodendron bifolium (Fabaceae), an endangered desert shrub from China

Haowen Tiana Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi, ChinaView further author information
,
Xinyu Zhua Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi, ChinaView further author information
,
Juan Qiua Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi, ChinaView further author information
,
Hongxiang Zhangb State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, ChinaView further author information
&
Xiaojun Shia Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi, ChinaCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0001-7268-303XView further author information
ORCID Icon
Pages 309-313 | Received 06 Dec 2023, Accepted 23 Feb 2024, Published online: 03 Mar 2024

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi:10.1089/cmb.2012.0021.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem Bull. 19(1):11–15.
  • Duan L, Harris AJ, Ye W, Deng SW, Song ZQ, Chen HF, Wen J. 2019. Untangling the taxonomy of the Cladrastis clade (Leguminosae: Papilionoideae) by integrating phylogenetics and ecological evidence. Taxon. 68(6):1189–1203. doi:10.1002/tax.12155.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi:10.1038/nmeth.4285.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Li J, Huang LP, Lv HY, Wang XA. 2013a. Distribution patterns of main populations of Ammodendron argenteum communities in the Takeermohuer Desert. Arid Zone Res. 30:634–639.
  • Li J, Wang XA, Lv HY, Wang SX. 2013b. Interspecific relationships of major species in Ammodendron argenteum communities of Takeermohuer Desert. Guihaia. 33:482–487.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13(1):715. doi:10.1186/1471-2164-13-715.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
  • Lohse M, Drechsel O, Bock R. 2007. OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet. 52(5–6):267–274. doi:10.1007/s00294-007-0161-y.
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
  • Yakovlev GP, Sytin AK, Roskov YR. 1996. Legumes of Northern Eurasia. A checklist: 1–724. Royal Botanic Gardens, Kew.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.