The complete chloroplast genome sequence of a cultivar of Chrysanthemum, Chrysanthemum × morifolium ‘Hangbaiju’ (Asteraceae)

References

• Baek J, Park S, Lee J, Min J, Park J, Lee GW. 2021. The complete chloroplast genome of Chrysanthemum zawadskii Herbich (Asteraceae) isolated in Korea. Mitochondrial DNA B Resour. 6(7):1956–1958. doi:10.1080/23802359.2021.1934148.
   PubMed Web of Science ®Google Scholar
• Beier S, Thiel T, Münch T, Scholz U, Mascher M. 2017. MISA-web: a web server for microsatellite prediction. Bioinformatics. 33(16):2583–2585. doi:10.1093/bioinformatics/btx198.
   PubMed Web of Science ®Google Scholar
• Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27(2):573–580. doi:10.1093/nar/27.2.573.
   PubMed Web of Science ®Google Scholar
• Chen S, Zhou Y, Chen Y, Gu J. 2018. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 34(17):i884–i890. doi:10.1093/bioinformatics/bty560.
   PubMed Web of Science ®Google Scholar
• Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
   Google Scholar
• Fan WW, Wang JH, Zhao KK, Wang HX, Zhu ZX, Wang HF. 2019. Complete plastome sequence of Antirhea chinensis (Champ. ex Benth.) Forbes et Hemst: an endemic species in South China. Mitochondrial DNA Part B. 4(1):538–539. doi:10.1080/23802359.2018.1553514.
   Web of Science ®Google Scholar
• Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. doi:10.1093/nar/gkz238.
   PubMed Web of Science ®Google Scholar
• Hongmei S, Wenrui H, Dianyun H, Yang X. 2021. Complete chloroplast genome sequence of Dendranthema zawadskii Herbich. Mitochondrial DNA B Resour. 6(8):2117–2119. doi:10.1080/23802359.2021.1942261.
   PubMed Web of Science ®Google Scholar
• Jin JJ, Yu W. b, Yang JB, Song Y, Depamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
   PubMed Web of Science ®Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
   Google Scholar
• Li H, Durbin R. 2009. Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics. 25(14):1754–1760. doi:10.1093/bioinformatics/btp324.
   PubMed Web of Science ®Google Scholar
• Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079. doi:10.1093/bioinformatics/btp352.
   PubMed Web of Science ®Google Scholar
• Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
   PubMed Web of Science ®Google Scholar
• Long W, Bai X, Wang S, Chen H, Yin XL, Gu HW, Yang J, Fu H. 2023. UHPLC-QTOF-MS-based untargeted metabolomics and mineral element analysis insight into the geographical differences of Chrysanthemum × morifolium Ramat cv. “Hangbaiju” from different origins. Food Res Int. 163:112186. doi:10.1016/j.foodres.2022.112186.
   PubMed Web of Science ®Google Scholar
• Ma YP, Zhao L, Zhang WJ, Zhang YH, Xing X, Duan XX, Hu J, Harris AJ, Liu PL, Dai SL, et al. 2020. Origins of cultivars of Chrysanthemum—Evidence from the chloroplast genome and nuclear LFY gene. J of Sytematics Evolution. 58(6):925–944. doi:10.1111/jse.12682.
   Web of Science ®Google Scholar
• Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
   PubMed Web of Science ®Google Scholar
• Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73. doi:10.1093/nar/gkz345.
   PubMed Web of Science ®Google Scholar
• Tyagi S, Jung JA, Kim JS, Kwon SJ, Won SY. 2019. The complete chloroplast genome of an economic plant, Chrysanthemum morifolium ‘Baekma. Mitochondrial DNA B Resour. 4(2):3133–3134. doi:10.1080/23802359.2019.1666682.
   PubMed Web of Science ®Google Scholar
• Tyagi S, Jung JA, Kim JS, Won SY. 2020. A comparative analysis of the complete chloroplast genomes of three Chrysanthemum boreale strains. PeerJ. 8(7):e9448. doi:10.7717/peerj.9448.
   PubMedGoogle Scholar
• Won SY, Jung JA, Kim JS. 2018. The complete chloroplast genome of Chrysanthemum boreale (Asteraceae). Mitochondrial DNA B Resour. 3(2):549–550. doi:10.1080/23802359.2018.1468225.
   PubMed Web of Science ®Google Scholar
• Xia H, Xu Y, Liao B, Huang Z, Zhou H, Wang F. 2021. Complete chloroplast genome sequence of a Chinese traditional cultivar in Chrysanthemum, Chrysanthemum morifolium ‘Anhuishiliuye. Mitochondrial DNA B Resour. 6(4):1281–1282. doi:10.1080/23802359.2020.1866451.
   PubMed Web of Science ®Google Scholar
• Xia H, Xu Y, Zhang J, Huang Z, Luo H, Ye Z, Zhou H. 2021. Complete chloroplast genome sequence of a Dutch cultivar of Chrysanthemum, Chrysanthemum morifolium ‘Orizaba’ (Asteraceae). Mitochondrial DNA B Resour. 6(7):1937–1938. doi:10.1080/23802359.2021.1936672.
   PubMed Web of Science ®Google Scholar
• Zeng T, Li J, Fu Q, Wang C. 2021. The Complete Chloroplast of Chrysanthemum × Morifolium ‘Fubaiju. Mitochondrial DNA B Resour. 6(10):3062–3063. doi:10.1080/23802359.2021.1960213.
   PubMed Web of Science ®Google Scholar
• Zhu ZX, Wang JH, Zhao KK, Fan WW, Wang HX, Wang HF. 2019. Complete chloroplast genome of Saprosma merrillii Lo. (Rubiaceae): A Near Threaten (NT) shrub species endemic to Hainan province, China. Mitochondrial DNA Part B. 4(1):742–743. doi:10.1080/23802359.2019.1565931.
   Web of Science ®Google Scholar