152
Views
0
CrossRef citations to date
0
Altmetric
Plastome Report

The complete chloroplast genome assembly of Commelina caroliniana Walter (Commelinaceae)

ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon & ORCID Icon
Pages 546-550 | Received 08 Jan 2024, Accepted 15 Apr 2024, Published online: 23 Apr 2024

References

  • Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens‐Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, et al. 2016. Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots. New Phytol. 209(2):855–870. doi:10.1111/nph.13617.
  • Cui Y, Liang R. 2019. The chloroplast genome sequence of Commelina communis (Commelinaceae). Mitochondrial DNA Part B Resour. 4(2):2631–2632. doi:10.1080/23802359.2019.1642153.
  • Daniell H, Lin CS, Yu M, Chang WJ. 2016. Chloroplast genomes: diversity, evolution, and applications in genetic engineering. Genome Biol. 17(1):134. doi:10.1186/s13059-016-1004-2.
  • Faden RB. 1989. Commelina caroliniana (Commelinaceae): a misunderstood species in the United States is an old introduction from Asia. Taxon. 38(1):43–53. doi:10.2307/1220885.
  • Faden RB. 1993. The misconstrued and rare species of Commelina (Commelinaceae) in the eastern United States. Ann Missouri Bot Gard. 80(1):208–218. doi:10.2307/2399824.
  • Gajurel JP, Shrestha KK. 2010. Taxonomy of the genus Commelina Plum. ex L. (Commelinaceae) in Nepal. Botanica Orientalis. 6:25–31. doi:10.3126/botor.v6i0.2907.
  • Hassemer G. 2019. Further advances to the nomenclatural, taxonomic and geographic knowledge of the New World Commelina (Commelinaceae): toward a continental treatment. Phytotaxa. 400(3):89–122. doi:10.11646/phytotaxa.400.3.1.
  • Jung J, Kim C, Kim JH. 2021. Insights into phylogenetic relationships and genome evolution of subfamily Commelinoideae (Commelinaceae Mirb.) inferred from complete chloroplast genomes. BMC Genomics. 22(1):231. doi:10.1186/s12864-021-07541-1.
  • Kang ES, Lee KH, Son DC. 2021. An overlooked invasive alien plant of Jejudo Island: Commelina caroliniana (Commelinaceae). Korean J Pl Taxon. 51(1):10–17. doi:10.11110/kjpt.2021.51.1.10.
  • Kaul V, Koul AK. 2012. Staminal variation and its possible significance in Commelina benghalensis L. and Commelina caroliniana Walter. Curr Sci. 103(4):419–426. https://www.jstor.org/stable/24085091.
  • Li B, Cantino PD, Olmstead RG, Bramley GL, Xiang CL, Ma ZH, Tan YH, Zhang DX. 2016. A large-scale chloroplast phylogeny of the Lamiaceae sheds new light on its subfamilial classification. Sci Rep. 6(1):34343. doi:10.1038/srep34343.
  • Li X, Yang Y, Henry RJ, Rossetto M, Wang Y, Chen S. 2015. Plant DNA barcoding: from gene to genome. Biol Rev Camb Philos Soc. 90(1):157–166. doi:10.1111/brv.12104.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi:10.1093/molbev/msaa015.
  • Nandikar MD, Gurav RV. 2018. A new species of Commelina (Commelinaceae) from India. Webbia. 73(2):233–237. doi: 10.1080/00837792.2018.1540743.
  • Ni Y, Li J, Zhang C, Liu C. 2023. Generating sequencing depth and coverage map for organelle genomes. doi:10.17504/protocols.io.4r3l27jkxg1y/v1.
  • Nock CJ, Waters DL, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ. 2011. Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnol J. 9(3):328–333. doi:10.1111/j.1467-7652.2010.00558.x.
  • Plants of the World Online. 2023. Website: Plants of the World Online (accessed November 21, 2023. Available at http://www.plantsoftheworldonline.org.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq–versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi:10.1093/nar/gkx391.
  • Wick RR, Schultz MB, Zobel J, Holt KE. 2015. Bandage: interactive visualization of de novo genome assemblies. Bioinformatics. 31(20):3350–3352. doi:10.1093/bioinformatics/btv383.
  • Wu P, Xu C, Chen H, Yang J, Zhang XC, Zhou SL. 2021. NOVOWrap: an automated solution for plastid genome assembly and structure standardization. Mol Ecol Resour. 21(6):2177–2186. doi:10.1111/1755-0998.13410.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355. doi:10.1111/1755-0998.13096.