The complete mitochondrial genome of Potomida acarnanica (Kobelt, 1879)

References

• Al Arab M, Zu Siederdissen CH, Tout K, Sahyoun AH, Stadler PF, Bernt M. 2017. Accurate annotation of protein-coding genes in mitochondrial genomes. Mol Phylogenet Evol. 106:209–216. doi:10.1016/j.ympev.2016.09.024.
   PubMed Web of Science ®Google Scholar
• Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi:10.1016/j.ympev.2012.08.023.
   PubMed Web of Science ®Google Scholar
• Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973. doi:10.1093/bioinformatics/btp348.
   PubMed Web of Science ®Google Scholar
• Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi:10.1093/nar/gkw955.
   PubMed Web of Science ®Google Scholar
• Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. 2019. Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Res. 47(20):10543–10552. doi:10.1093/nar/gkz833.
   PubMed Web of Science ®Google Scholar
• Ferreira-Rodríguez N, Akiyama YB, Aksenova OV, Araujo R, Christopher Barnhart M, Bespalaya YV, Bogan AE, Bolotov IN, Budha PB, Clavijo C, et al. 2019. Research priorities for freshwater mussel conservation assessment. Biol Conserv. 231:77–87. doi:10.1016/j.biocon.2019.01.002.
   Web of Science ®Google Scholar
• Froufe E, Bolotov I, Aldridge DC, Bogan AE, Breton S, Gan HM, Kovitvadhi U, Kovitvadhi S, Riccardi N, Secci-Petretto G, et al. 2020. Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution. Heredity (Edinb). 124(1):182–196. doi:10.1038/s41437-019-0242-y.
   PubMed Web of Science ®Google Scholar
• Froufe E, Gan HM, Lee YP, Carneiro J, Varandas S, Teixeira A, Zieritz A, Sousa R, Lopes-Lima M. 2016b. The male and female complete mitochondrial genome sequences of the Endangered freshwater mussel Potomida littoralis (Cuvier, 1798) (Bivalvia: Unionidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(5):3571–3572. doi:10.3109/19401736.2015.1074223.
   PubMedGoogle Scholar
• Froufe E, Prié V, Faria J, Ghamizi M, Gonçalves DV, Gürlek ME, Karaouzas I, Kebapçi Ü, Şereflişan H, Sobral C, et al. 2016. Phylogeny, phylogeography, and evolution in the Mediterranean region: news from a freshwater mussel (Potomida, Unionida). Mol Phylogenet Evol. 100:322–332. doi:10.1016/j.ympev.2016.04.030.
   PubMed Web of Science ®Google Scholar
• Garrison NL, Johnson PD, Whelan NV. 2021. Conservation genomics reveals low genetic diversity and multiple parentage in the threatened freshwater mussel, Margaritifera hembeli. Conserv Genet. 22(2):217–231. doi:10.1007/s10592-020-01329-8.
   Web of Science ®Google Scholar
• Gomes-dos-Santos A, Froufe E, Amaro R, Ondina P, Breton S, Guerra D, Aldridge DC, Bolotov IN, Vikhrev IV, Gan HM, et al. 2019. The male and female complete mitochondrial genomes of the threatened freshwater pearl mussel Margaritifera (Linnaeus, 1758) (Bivalvia: Margaritiferidae). Mitochondrial DNA Part B. 4(1):1417–1420. doi:10.1080/23802359.2019.1598794.
   Web of Science ®Google Scholar
• Huang X-C, Rong J, Liu Y, Zhang M-H, Wan Y, Ouyang S, Zhou C-H, Wu X-P. 2013. The complete maternally and paternally inherited mitochondrial genomes of the endangered freshwater mussel Solenaia carinatus (Bivalvia: Unionidae) and implications for Unionidae taxonomy. PLoS ONE. 8(12):e84352. doi:10.1371/journal.pone.0084352.
   PubMed Web of Science ®Google Scholar
• Huang XC, Zhou CH, Ouyang S, Wu XP. 2015. The complete F-type mitochondrial genome of threatened Chinese freshwater mussel Solenaia oleivora (Bivalvia: Unionidae: Gonideinae). Mitochondrial DNA. 26(2):263–264. doi:10.3109/19401736.2013.823190.
   PubMed Web of Science ®Google Scholar
• Kalyaanamoorthy S, Minh BQ, Wong TK, Von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi:10.1038/nmeth.4285.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
   PubMed Web of Science ®Google Scholar
• Kück P, Longo GC. 2014. FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies. Front Zool. 11(1):81. doi:10.1186/s12983-014-0081-x.
   PubMed Web of Science ®Google Scholar
• Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv:1303.3997v2 [q-bio.GN].
   Google Scholar
• Lopes-Lima M, Burlakova LE, Karatayev AY, Mehler K, Seddon M, Sousa R. 2018. Conservation of freshwater bivalves at the global scale: diversity, threats and research needs. Hydrobiologia. 810(1):1–14. doi:10.1007/s10750-017-3486-7.
   Web of Science ®Google Scholar
• Lopes-Lima M, Reis J, Alvarez MG, Anastácio PM, Banha F, Beja P, Castro P, Gama M, Gil MG, Gomes-dos-Santos A, et al. 2023. The silent extinction of freshwater mussels in Portugal. Biol Conserv. 285:110244. doi:10.1016/j.biocon.2023.110244.
   Web of Science ®Google Scholar
• Lopes-Lima M, Sousa R, Geist J, Aldridge DC, Araujo R, Bergengren J, Bespalaya Y, Bódis E, Burlakova L, Van Damme D, et al. 2017. Conservation status of freshwater mussels in Europe: state of the art and future challenges. Biol Rev Camb Philos Soc. 92(1):572–607. doi:10.1111/brv.12244.
   PubMed Web of Science ®Google Scholar
• Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
   PubMed Web of Science ®Google Scholar
• Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual (No. Ed. 2). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
   Google Scholar
• Sheng JQ, Lin QH, Wang JH, Peng K, Hong YJ. 2014. Complete sequence analysis of mitochondrial genome in Hyriopsis schlegelii. Acta Hydrobiol Sin. 38(2):320–327.
   Google Scholar
• Skoulikidis NT, Zogaris S, Karaouzas I. 2022. Rivers of the Balkans. In: K. Tockner, C. Zarfl and C. T. Robinson (eds.), Rivers of Europe. Amsterdam: Elsevier; p. 593–653.
   Google Scholar
• Strayer DL. 2014. Understanding how nutrient cycles and freshwater mussels (Unionoida) affect one another. Hydrobiologia. 735(1):277–292. doi:10.1007/s10750-013-1461-5.
   Web of Science ®Google Scholar
• Strayer DL. 2017. What are freshwater mussels worth? Freshw Mollusk Biol Conserv. 20(2):103–113. doi:10.31931/fmbc.v20i2.2017.103-113.
   Google Scholar
• Teiga-Teixeira J, Froufe E, Gomes-dos-Santos A, Bogan AE, Karatayev AY, Burlakova LE, Aldridge DC, Bolotov IN, Vikhrev IV, Teixeira A, et al. 2020. Complete mitochondrial genomes of the freshwater mussels Amblema plicata (Say, 1817), Pleurobema oviforme (Conrad, 1834), and Popenaias popeii (Lea, 1857) (Bivalvia: Unionidae: Ambleminae). Mitochondrial DNA Part B. 5(3):2959–2961. doi:10.1080/23802359.2020.1791008.
   Google Scholar
• Vaughn CC. 2018. Ecosystem services provided by freshwater mussels. Hydrobiologia. 810(1):15–27. doi:10.1007/s10750-017-3139-x.
   Web of Science ®Google Scholar
• Zieritz A, Froufe E, Bolotov I, Gonçalves DV, Aldridge DC, Bogan AE, Gan HM, Gomes-Dos-Santos A, Sousa R, Teixeira A, et al. 2021. Mitogenomic phylogeny and fossil-calibrated mutation rates for all F-and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia). Zool J Linn Soc. 193(3):1088–1107. doi:10.1093/zoolinnean/zlaa153.
   Web of Science ®Google Scholar
• Zieritz A, Sousa R, Aldridge DC, Douda K, Esteves E, Ferreira-Rodríguez N, Mageroy JH, Nizzoli D, Osterling M, Reis J, et al. 2022. A global synthesis of ecosystem services provided and disrupted by freshwater bivalve molluscs. Biol Rev Camb Philos Soc. 97(5):1967–1998. doi:10.1111/brv.12878.
   PubMed Web of Science ®Google Scholar