Herbarium-based science in the twenty-first century

References

• Ames, M., and D. M. Spooner. 2008. “DNA from Herbarium Specimens Settles a Controversy about Origins of the European Potato.” American Journal of Botany 95 (2): 252–257. doi:10.3732/ajb.95.2.252.
   Web of Science ®Google Scholar
• Bakker, F. T. 2017. “Herbarium Genomics: Skimming and Plastomics from Archival Specimens.” Webbia 72 (1): 35–45. doi:10.1080/00837792.2017.1313383.
   Google Scholar
• Beaman, R. S., and N. Cellinese. 2012. “Mass Digitization of Scientific Collections: New Opportunities to Transform the Use of Biological Specimens and Underwrite Biodiversity Science.” ZooKeys 209: 7–17. doi:10.3897/zookeys.209.3313.
   Web of Science ®Google Scholar
• Besnard, G., M. E. Bianconi, J. Hackel, S. Manzi, M. S. Vorontsova, and P.-A. Christin. 2018. “Herbarium Genomics Retraces the Origins of C4-Specific Carbonic Anhydrase in Andropogoneae (Poaceae).” Botany Letters 165 (3). doi:10.1080/23818107.2018.1469429.
   Web of Science ®Google Scholar
• Bieker, V., and M. D. Martin. 2018. “Implications and Future Prospects for Evolutionary Analyses of DNA in Historical Herbarium Collections.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1458651.
   Web of Science ®Google Scholar
• Buswell, J. M., A. T. Moles, and S. Hartley. 2011. “Is Rapid Evolution Common in Introduced Plant Species?” Journal of Ecology 99 (1): 214–224. doi:10.1111/j.1365-2745.2010.01759.x.
   Web of Science ®Google Scholar
• Carine, M. A., E. Cesar, L. Ellis, J. Hunnex, A. Paul, R. Prakash, F. J. Rumsey, J. Wajer, J. Wilbraham, and J. C. Yesilyurt. 2018. “Examining the Spectra of Herbarium Uses and Users.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1482782.
   Web of Science ®Google Scholar
• Chen, Y., F. Jabbour, A. Novikov, W. Wang, and S. Gerber. 2018. “A Study of Floral Shape Variation in Delphinieae (Ranunculaceae) Using Geometric Morphometrics on Herbarium Specimens.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1427145.
   Web of Science ®Google Scholar
• Corney, D., J. Y. Clark, H. L. Tang, and P. Wilkin. 2012. “Automatic Extraction of Leaf Characters from Herbarium Specimens.” Taxon 61 (1): 231–244.
   Web of Science ®Google Scholar
• Damerval, C., W. Ben Othman, D. Manicacci, and F. Jabbour. 2018. “Distribution Area of the Two Floral Morphs of Nigella damascena L. (Ranunculaceae): A Diachronic Study Using Herbarium Specimens Collected in France.” Botany Letters 165 (3). doi:10.1080/23818107.2017.1422437.
   Web of Science ®Google Scholar
• Daru, B. H., D. S. Park, R. B. Primack, C. G. Willis, D. S. Barrington, T. J. Whitfeld, T. G. Seidler, et al. 2018. “Widespread Sampling Biases in Herbaria Revealed from Large‐Scale Digitization.” New Phytologist 217 (2): 939–955. doi:10.1111/nph.14855.
   PubMed Web of Science ®Google Scholar
• Dentant, C., S. Lavergne, and V. Malécot. 2018. “Taxonomic Revision of West-Alpine Cushion Plant Species Belonging to Androsace Subsect. Aretia.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1450784.
   Web of Science ®Google Scholar
• Dunning, L. T., A. L. Liabot, J. K. Olofsson, E. K. Smith, M. S. Vorontsova, K. J. Simpson, M. R. Lundgren, et al. 2017. “The Recent and Rapid Spread of Themeda triandra.” Botany Letters 164: 327–337. doi:10.1080/23818107.2017.1391120.
   Web of Science ®Google Scholar
• Ellwood, E. R., P. Kimberly, R. Guralnick, P. Flemons, K. Love, S. Ellis, J. M. Allen, et al. 2018. “Worldwide Engagement for Digitizing Biocollections (Wedigbio): The Biocollections Community’s Citizen-Science Space on the Calendar.” BioScience 68 (2): 112–124. doi:10.1093/biosci/bix143.
   Web of Science ®Google Scholar
• Espinosa, F., and M. Pinedo Castro. 2018. “On the Use of Herbarium Specimens for Morphological and Anatomical Research.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1451775.
   Web of Science ®Google Scholar
• Fuller, D. Q., and C. Murphy. 2018. “The Origins and Early Dispersal of Horsegram (Macrotyloma uniflorum), a Major Crop of Ancient India.” Genetic Resources and Crop Evolution 65 (1): 285–305. doi:10.1007/s10722-017-0532-2.
   Web of Science ®Google Scholar
• Funk, V. 2003. “100 Uses for an Herbarium (Well at Least 72).” American Society of Plant Taxonomists Newsletter 17 (2): 17–19.
   Google Scholar
• Henning, T., P. Plitzner, A. Güntsch, W. G. Berendsohn, A. Müller, and N. Kilian. 2018. “Building Compatible and Dynamic Character Matrices – Current and Future Use of Specimen-Based Character Data.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1452791.
   Web of Science ®Google Scholar
• Herpin, U., B. Markert, V. Weckert, J. Berlekamp, K. Friese, U. Siewers, and H. Lieth. 1997. “Retrospective Analysis of Heavy Metal Concentrations at Selected Locations in the Federal Republic of Germany Using Moss Material from a Herbarium.” Science of the Total Environment 205 (1): 1–12. doi:10.1016/S0048-9697(97)05403-X.
   Web of Science ®Google Scholar
• Hill, A., R. Guralnick, A. Smith, A. Sallans, R. Gillespie, M. Denslow, J. Gross, et al. 2012. “The Notes from Nature Tool for Unlocking Biodiversity Records from Museum Records through Citizen Science.” ZooKeys 209: 219. doi:10.3897/zookeys.209.3472.
   Web of Science ®Google Scholar
• Hufft, R. A., M. E. DePrenger-Levin, R. A. Levy, and M. B. Islam. 2018. “Using Herbarium Specimens to Select Indicator Species for Climate Change Monitoring.” Biodiversity and Conservation 27 (6): 1487–1501. doi:10.1007/s10531-018-1505-2.
   Web of Science ®Google Scholar
• Joye, D. A., E. Castella, and J. B. Lachavanne. 2002. “Occurrence of Characeae in Switzerland over the Last Two Centuries (1800–2000).” Aquatic Botany 72 (3): 369–385. doi:10.1016/S0304-3770(01)00211-X.
   Web of Science ®Google Scholar
• Körner, C., S. Leuzinger, S. Riedl, R. T. Siegwolf, and L. Streule. 2016. “Carbon and Nitrogen Stable Isotope Signals for an Entire Alpine Flora, Based on Herbarium Samples.” Alpine Botany 126 (2): 153–166. doi:10.1007/s00035-016-0170-x.
   Web of Science ®Google Scholar
• Lande, R. 1988. “Genetics and Demography in Biological Conservation.” Science 241 (4872): 1455–1460. doi:10.1126/science.3420403.
   Web of Science ®Google Scholar
• Lavoie, C. 2013. “Biological Collections in an Ever Changing World: Herbaria as Tools for Biogeographical and Environmental Studies.” Perspectives in Plant Ecology, Evolution and Systematics 15 (1): 68–76. doi:10.1016/j.ppees.2012.10.002.
   Web of Science ®Google Scholar
• Le Bras, G., M. Pignal, M. L. Jeanson, S. Muller, C. Aupic, B. Carré, G. Flament, et al. 2017. “The French Muséum National D’histoire Naturelle Vascular Plant Herbarium Collection Dataset.” Scientific Data 4:170016. doi:10.1038/sdata.2017.16.
   PubMed Web of Science ®Google Scholar
• Li, W., Q. Song, R. H. Brlansky, and J. S. Hartung. 2007. “Genetic Diversity of Citrus Bacterial Canker Pathogens Preserved in Herbarium Specimens.” Proceedings of the National Academy of Sciences of the United States of America 104 (47): 18427–18432. doi:10.1073/pnas.0705590104.
   Web of Science ®Google Scholar
• Lundgren, M. R., G. Besnard, B. S. Ripley, C. E. Lehmann, D. S. Chatelet, R. G. Kynast, M. Namaganda, et al. 2015. “Photosynthetic Innovation Broadens the Niche within a Single Species.” Ecology Letters 18 (10): 1021–1029. doi:10.1111/ele.12484.
   Web of Science ®Google Scholar
• Martin, M. D., E. Cappellini, J. E., A. Samaniego, M. L. Zepeda, P. F. Campos, A. Seguin-Orlando, et al. 2013. “Reconstructing Genome Evolution in Historic Samples of the Irish Potato Famine Pathogen.” Nature Communications 4:2172. doi:10.1038/ncomms3172.
   Web of Science ®Google Scholar
• Martin, M. D., E. Quiroz-Claros, G. S. Brush, and E. A. Zimmer. 2018. “Herbarium Collection-Based Phylogenetics of the Ragweeds (Ambrosia, Asteraceae).” Molecular Phylogenetics and Evolution 120: 335–341. doi:10.1016/j.ympev.2017.12.023.
   Web of Science ®Google Scholar
• Mason Heberling, J., and B. L. Isaac. 2017. “Herbarium Specimens as Exaptations: New Uses for Old Collections.” American Journal of Botany 104 (7): 963–965. doi:10.3732/ajb.1700125.
   Web of Science ®Google Scholar
• Matsuhashi, S., H. Kudoh, M. Maki, M. Cartolano, M. Tsiantis, T. Itagaki, and S. Sakai. 2016. “Invasion History of Cardamine hirsuta in Japan Inferred from Genetic Analyses of Herbarium Specimens and Current Populations.” Biological Invasions 18 (7): 1939–1951. doi:10.1007/s10530-016-1139-9.
   Web of Science ®Google Scholar
• Meineke, E. K., C. C. Davis, and T. J. Davies. 2018. “The Unrealized Potential of Herbaria for Global Change Biology.” Ecological Monographs 88 (3). doi:10.1002/ecm.1307.
   Google Scholar
• Muller, S. 2015. “The Use of Herbarium Specimens for Investigating the Spatio-Temporal Dynamics of Biological Invasions.” Revue d’Ecologie (la Terre et la Vie) 70 (Sup. 12): 229–235. hdl.handle.net/2042/57900.
   Google Scholar
• Muller, S. 2016. “The Use of Herbarium Specimens for Investigating Macroecological and Environmental Changes.” In Proceedings of UNESCO International Conference (2014): Botanists of the Twenty First Century: Roles, Challenges and Opportunities, edited by N. R. Rakotoarisoa, S. Blackmore, and B. Riera. Paris: UNES.
   Google Scholar
• Nielsen, T. F., J. R. Larsen, A. Michelsen, and H. H. Bruun. 2017. “Are Herbarium Mosses Reliable Indicators of Historical Nitrogen Deposition?” Environmental Pollution 231 (1): 1201–1207. doi:10.1016/j.envpol.2017.04.020.
   Web of Science ®Google Scholar
• Nualart, N., N. Ibáñez, I. Soriano, and J. López-Pujol. 2017. “Assessing the Relevance of Herbarium Collections as Tools for Conservation Biology.” The Botanical Review 83 (3): 303–325. doi:10.1007/s12229-017-9188-z.
   Web of Science ®Google Scholar
• Reeb, C., J. Kaandorp, F. Jansson, N. Puillandre, J. Y. Dubuisson, R. Cornette, F. Jabbour, et al. 2018. “Quantification of Complex Modular Architecture in Plants.” New Phytologist 218 (2): 859–872. doi:10.1111/nph.15045.
   PubMed Web of Science ®Google Scholar
• Rogers, S. O., and A. J. Bendich. 1985. “Extraction of DNA from Milligram Amounts of Fresh, Herbarium and Mummified Plant Tissues.” Plant Molecular Biology 5 (2): 69–76. doi:10.1007/BF00020088.
   PubMed Web of Science ®Google Scholar
• Rouhan, G., S. Chagnoux, B. Dennetière, V. Schäfer, and M. Pignal. 2016. “The Herbonauts Website: Recruiting the General Public to Acquire the Data from Herbarium Labels.” In Proceedings of UNESCO International Conference (2014): Botanists of the Twenty First Century: Roles, Challenges and Opportunities, edited by N. R. Rakotoarisoa, S. Blackmore, and B. Riera. Paris: UNES.
   Google Scholar
• Roullier, C., L. Benoit, D. B. McKey, and V. Lebot. 2013. “Historical Collections Reveal Patterns of Diffusion of Sweet Potato in Oceania Obscured by Modern Plant Movements and Recombination.” Proceedings of the National Academy of Sciences of the United States of America 110 (6): 2205–2210. doi:10.1073/pnas.1211049110.
   PubMed Web of Science ®Google Scholar
• Ryan, K. G., A. Burne, and R. D. Seppelt. 2009. “Historical Ozone Concentrations and Flavonoid Levels in Herbarium Specimens of the Antarctic Moss Bryum argenteum.” Global Change Biology 15 (7): 1694–1702. doi:10.1111/j.1365-2486.2009.01885.x.
   Web of Science ®Google Scholar
• Rydin, C., N. Wikström, and B. Bremer. 2017. “Conflicting Results from Mitochondrial Genomic Data Challenge Current Views of Rubiaceae Phylogeny.” American Journal of Botany 104 (10): 1522–1532. doi:10.3732/ajb.1700255.
   PubMed Web of Science ®Google Scholar
• Schneider, J. V., V. Negraschis, J. Habersetzer, R. Rabenstein, J. Wesenberg, K. Wesche, and G. Zizka. 2018. “Taxonomic Diversity Masks Leaf Vein–Climate Relationships: Lessons from Herbarium Collections across a Latitudinal Rainfall Gradient in West Africa.” Botany Letters 165 (3). doi:10.1080/23818107.2017.1421480.
   Web of Science ®Google Scholar
• Seregin, A. P. 2016. “Making the Russian Flora Visible: Fast Digitization of the Moscow University Herbarium (MW) in 2015.” Taxon 65 (1): 205–207. doi:10.12705/651.29.
   Web of Science ®Google Scholar
• Shotbolt, L., P. Buker, and M. R. Ashmore. 2007. “Reconstructing Temporal Trends in Heavy Metal Deposition: Assessing the Value of Herbarium Moss Samples.” Environmental Pollution 147 (1): 120–130. doi:10.1016/j.envpol.2006.08.031.
   Web of Science ®Google Scholar
• Smith, V. S., and V. Blagoderov. 2012. “Bringing Collections Out of the Dark.” ZooKeys 209: 1–6. doi:10.3897/zookeys.209.3699.
   Web of Science ®Google Scholar
• Soltis, P. S. 2017. “Digitization of Herbaria Enables Novel Research.” American Journal of Botany 104 (9): 1281–1284. doi:10.3732/ajb.1700281.
   PubMed Web of Science ®Google Scholar
• Sukhorukov, A. P., and M. Kushunina. 2016. “Taxonomic Revision and Distribution of Herbaceous Paramollugo (Molluginaceae) in the Eastern Hemisphere.” PhytoKeys 73: 93–116. doi:10.3897/phytokeys.73.10365.
   Web of Science ®Google Scholar
• Thiers, B. 2018 (And Continuously Updated). Index Herbariorum: A Global Directory of Public Herbaria and Associated Staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/ih.
   Google Scholar
• Unger, J., D. Merhof, and S. S. Renner. 2016. “Computer Vision Applied to Herbarium Specimens of German Trees: Testing the Future Utility of the Millions of Herbarium Specimen Images for Automated Identification.” BMC Evolutionary Biology 16 (1): 248. doi:10.1186/s12862-016-0827-5.
   Web of Science ®Google Scholar
• Van de Paer, C., C. Hong-Wa, C. Jeziorski, and G. Besnard. 2016. “Mitogenomics of Hesperelaea, an Extinct Genus of Oleaceae.” Gene 594 (2): 197–202. doi:10.1016/j.gene.2016.09.007.
   PubMed Web of Science ®Google Scholar
• Wandeler, P., P. E. Hoeck, and L. F. Keller. 2007. “Back to the Future: Museum Specimens in Population Genetics.” Trends in Ecology & Evolution 22 (12): 634–642. doi:10.1016/j.tree.2007.08.017.
   PubMed Web of Science ®Google Scholar
• Wang, W. 2018. “A Primer to the Use of Herbarium Specimens in Plant Phylogenetics.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1438311.
   Web of Science ®Google Scholar
• Welch, A. J., K. Collins, A. Ratan, D. I. Drautz-Moses, S. C. Schuster, and C. Lindqvist. 2016. “The Quest to Resolve Recent Radiations: Plastid Phylogenomics of Extinct and Endangered Hawaiian Endemic Mints (Lamiaceae).” Molecular Phylogenetics and Evolution 99: 16–33. doi:10.1016/j.ympev.2016.02.024.
   PubMed Web of Science ®Google Scholar
• Willis, C. G., E. Law, A. C. Williams, B. F. Franzone, R. Bernardos, L. Bruno, C. Hopkins, et al. 2017b. “CrowdCurio: An Online Crowdsourcing Platform to Facilitate Climate Change Studies Using Herbarium Specimens.” New Phytologist 125 (1): 479–488. doi:10.1111/nph.14535.
   Web of Science ®Google Scholar
• Willis, C. G., E. R. Ellwood, R. B. Primack, C. C. Davis, K. D. Pearson, A. S. Gallinat, J. M. Yost, et al. 2017a. “Old Plants, New Tricks: Phenological Research Using Herbarium Specimens.” Trends in Ecology & Evolution 32 (7): 531–546. doi:10.1016/j.tree.2017.03.015.
   Web of Science ®Google Scholar
• Willis, F., J. Moat, and A. Paton. 2003. “Defining a Role for Herbarium Data in Red List Assessments: A Case Study of Plectranthus from Eastern and Southern Tropical Africa.” Biodiversity and Conservation 12 (7): 1537–1552. doi:10.1023/A:1023679329093.
   Web of Science ®Google Scholar
• Wolcott, K. A., and S. S. Renner. 2017. “Jan Vilém Helfer’s (1810–1840) Collections from India, the Andaman Archipelago and Burma.” Archives of Natural History 44 (2): 292–302. doi:10.3366/anh.2017.0450.
   Web of Science ®Google Scholar
• Woodward, F. I. 1987. “Stomatal Numbers are Sensitive to Increases in CO2 from Pre-Industrial Levels.” Nature 327 (6123): 617–618. doi:10.1038/327617a0.
   Web of Science ®Google Scholar
• Younis, S., C. Weiland, R. Hoehndorf, S. Dressler, T. Hickler, B. Seeger, and M. Schmidt. 2018. “Taxon and Trait Recognition from Digitized Herbarium Specimens Using Deep Convolutional Neural Networks.” Botany Letters 165 (3). doi:10.1080/23818107.2018.1446357.
   Web of Science ®Google Scholar
• Zecca, G., J. R. Abbott, W. B. Sun, A. Spada, F. Sala, and F. Grassi. 2012. “The Timing and the Mode of Evolution of Wild Grapes (Vitis).” Molecular Phylogenetics and Evolution 62 (2): 736–747. doi:10.1016/j.ympev.2011.11.015.
   Web of Science ®Google Scholar
• Zohner, C. M., and S. S. Renner. 2014. “Common Garden Comparison of the Leaf‐Out Phenology of Woody Species from Different Native Climates, Combined with Herbarium Records, Forecasts Long‐Term Change.” Ecology Letters 17 (8): 1016–1025. doi:10.1111/ele.12308.
   Web of Science ®Google Scholar