Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 29, 2018 - Issue 2
334
Views
9
CrossRef citations to date
0
Altmetric
Research Article

Geographic variation in the spotted-wing drosophila, Drosophila suzukii (Diptera: Drosophilidae), based on mitochondrial DNA sequences

, , , , , , & show all
Pages 312-322 | Received 04 Jul 2016, Accepted 31 Dec 2016, Published online: 27 Jan 2017

References

  • Adrion JR, Kousathanas A, Pascual M, Burrack HJ, Haddad NM, Bergland AO, Machado H, Sackton TB, Schlenke TA, Watada M, et al. 2014. Drosophila suzukii: the genetic footprint of a recent, worldwide invasion. Mol Biol Evol. 31:3148–3163.
  • Akaike H. 1974. A new look at the statistical model identification. IEEE Trans Automat Contr. 19:716–723.
  • Andrianov B, Goryacheva I, Mugue N, Sorokina S, Gorelova T, Mitrofanov V. 2010. Comparative analysis of the mitochondrial genomes in Drosophila virilis species group (Diptera: Drosophilidae). Trends Evol Biol. 2:e4.
  • Avise JC. 1998. Phylogeography. Cambridge: Harvard University Press.
  • Avise JC. 1994. Molecular markers, natural history and evolution. New York: Chapman and Hall.
  • Bae JS, Kim I, Kim SR, Jin BR, Sohn HD. 2001. Mitochondrial DNA sequence variation of the mushroom pest flies, Lycoriella mali (Diptera: Sciaridae) and Coboldia fuscipes (Diptera: Scatopsidae), in Korea. Appl Entomol Zool. 36:451–457.
  • Bandelt HJ, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 6:37–48.
  • Calabria G, Máca J, Bächli G, Serra L, Pascual M. 2012. First records of the potential pest species Drosophila suzukii (Diptera: Drosophilidae) in Europe. J Appl Entomol. 136:139–147.
  • Carvajal JI. 2010. Genetic diversity of Drosophila suzukii in San Diego. Drosophila Inform Serv. 93:67–68.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540–552.
  • Cini A, Ioriatti C, Anfora G. 2012. A review of the invasion of Drosophila suzukii in Europe and a draft research agenda for integrated pest management. Bull Insectol. 65:149–160.
  • Clary DO, Wolstenholme DR. 1985. The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. J Mol Evol. 22:252–271.
  • De Ré FC, Wallau GL, Robe LJ, Loreto ELS. 2014. Characterization of the complete mitochondrial genome of flower-breeding Drosophila incompta (Diptera, Drosophilidae). Genetica. 142:525–535.
  • Estoup A, Wilson IJ, Sullivan C, Cornuet JM, Moritz C. 2001. Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus. Genetics. 159:1671–1687.
  • Excoffier L, Lischer HL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10:564–567.
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131:479–491.
  • Fimiani P. 1989. Mediterranean region. In: Robinson AS, Hooper G, editors. Fruit flies: their biology, natural enemies and control, Vol 3A. Amsterdam: Elsevier; p. 39–50.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Marine Biol Biotechnol. 3:294–299.
  • García-Ramos G, Rodríguez D. 2002. Evolutionary speed of species invasions. Evolution. 56:661–668.
  • Grapputo A, Boman S, Lindstrom L, Lyytinen A, Mappes J. 2005. The voyage of an invasive species across continents: genetic diversity of North American and European Colorado potato beetle populations. Mol Ecol. 14:4207–4219.
  • Hajibabaei M, Singer GA, Hebert PD, Hickey DA. 2007. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends Genet. 23:167–172.
  • Hauser M. 2011. A historic account of the invasion of Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) in the continental United States, with remarks on their identification. Pest Manag Sci. 67:1352–1357.
  • Hauser M, Gaimari S, Damus M. 2009. Drosophila suzukii new to North America. Fly Times. 43:12–15.
  • Hebert PDN, Cywinska A, Ball SL, deWaard JR. 2003. Biological identifications through DNA barcodes. Proc Biol Sci. 270:313–321.
  • Holland BS. 2000. Genetics of marine bioinvasions. Hydrobiologia. 420:63–71.
  • Hurtado LA, Erez T, Castrezana S, Markow TA. 2004. Contrasting population genetic patterns and evolutionary histories among sympatric Sonoran Desert cactophilic Drosophila. Mol Ecol. 13:1365–1375.
  • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254–267.
  • Jung HK. 1994. Check list of insects from Korea. Seoul: Kon-Kuk University Press.
  • Kaneshiro KY. 1983. Sexual selection and direction of evolution in the biosystematics of Hawaiian Drosophilidae. Annu Rev Entomol. 28:161–178.
  • Kanzawa T. 1935. Research into the Fruit-fly Drosophila suzukii Matsumura (Preliminary Report). Yamanashi Prefecture Agricultural Experiment Station Report.
  • Kanzawa T. 1939. Studies on Drosophila suzukii Mats. Kofu: Yamanashi Agricultural Experiment Station 49. pp. Abstract in reviews of applied Entomology 29:622.
  • Kimura DK. 1980. Likelihood methods for the von Bertalanffy growth curve. Fish Bull. 77:765–776.
  • Kolbe JJ, Glor RE, Schettino LR, Lara AC, Larson A, Losos JB. 2004. Genetic variation increases during biological invasion by a Cuban lizard. Nature. 431:177–181.
  • Lande R, Barrowclough GF. 1987. Effective population size, genetic variation, and their use in population management. In: Soulé ME, editor. Viable populations for conservation. Cambridge: Cambridge University Press; p. 87–123.
  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics. 23:2947–2948.
  • Lee CE. 2002. Evolutionary genetics of invasive species. Trends Ecol Evol. 17:386–391.
  • Lee JC, Bruck DJ, Curry H, Edwards DL, Haviland DR, Van Steenwyk R, Yorgey B. 2011a. The susceptibility of small fruits and cherries to the spotted-wing drosophila, Drosophila suzukii. Pest Manag Sci. 67:1358–1367.
  • Lee JC, Bruck DJ, Dreves AJ, Ioriatti C, Vogt H, Baufeld P. 2011b. In Focus: spotted wing drosophila, Drosophila suzukii, across perspectives. Pest Manag Sci. 67:1349–1351.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the 9th Gateway Computing Environments Workshop (GCE). New Orleans; p. 1–8.
  • Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
  • Nei M, Maruyama T, Chakraborty R. 1975. Bottleneck effect and genetic-variability in populations. Evolution. 29:1–10.
  • Neigel JE, Avise JC. 1993. Application of a random walk model to geographic distributions of animal mitochondrial DNA variation. Genetics. 135:1209–1220.
  • Nunes MD, Neumeier H, Schlötterer C. 2008. Contrasting patterns of natural variation in global Drosophila melanogaster populations. Mol Ecol. 17:4470–4479.
  • Ohshima K. 1990. The history of straits around the Japanese Islands in the Late-Quarternary. Quat Res. 29:193–208.
  • Oku T. 2003. SWD: Drosophila suzukii (Matsumura). In: Japan Agricultural Pest Encyclopedia. Tokyo: Zenkoku Noson Kyoiku Kyokai; p. 381.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817–818.
  • Ronquist F, Huelsenbeck JP, Teslenko M. 2011. Draft MrBayes version 3.2 Manual. Tutorials and Model Summaries [Internet] Version 3.2. Available from: http://mrbayes.sourceforge.net/download.php.
  • Sakai AK, Allendorf FW, Holt JS, Lodge DM, Molofsky J, With KA, Baughman S, Cabin RJ, Cohen JE, Ellstrand NC, et al. 2001. The population biology of invasive species. Annu Rev Ecol Syst. 32:305–332.
  • Sarswat M, Dewan S, Fartyal RS. 2016. Mitochondrial DNA sequence variation in Drosophilid species (Diptera: Drosophilidae) along altitudinal gradient from Central Himalayan region of India. Indian J Genet. 95:357–367.
  • Saul SH. 1986. Genetics of the Mediterranean fruit fly (Ceratitis capitate) (Wiedemann). Agric Zool Rev. 1:73–108.
  • Stepien CA, Taylor CD, Dabrowska KA. 2002. Genetic variability and phylogeographic patterns of a nonindigenous species invasion: a comparison of exotic versus native zebra and quagga mussel populations. J Evol Biol. 15:314–328.
  • Swofford DL. 2001. Paup*: Phylogenetic analysis using parsimony (and other methods) 4.0. B5 [Internet]. Version 4.0. Available from: http://citeseerx.ist.psu.edu/viewdoc/summary?doi =10.1.1.458.6867.
  • Toda MJ. 1991. Drosophilidae (Diptera) in Myanmar (Burma) VII. The Drosophila melanogaster species-group, excepting the D. montium species-subgroup. Orient Insects. 25:69–94.
  • Villablanca FX, Roderick GK, Palumbi SR. 1998. Invasion genetics of the Mediterranean fruit fly: variation in multiple nuclear introns. Mol Ecol. 7:547–560.
  • Walsh D, Bolda M, Goodhue R, Dreves A, Lee JC, Bruck DJ, Walton VM, O'Neal SD, Zalom FG. 2011. Drosophila suzukii (Diptera: Drosophilidae): invasive pest of ripening soft fruit expanding its geographic range and damage potential. J Integr Pest Manag. 106:289–295.
  • Watterson GA, Guess HA. 1977. Is the most frequent allele the oldest? Theor Popul Biol. 11:141–160.
  • Williamson M. 1996. Biological invasions. New York: Chapman and Hall.
  • Yang Y, Hou ZC, Qian YH, Kang H, Zeng QT. 2012. Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera). Mol Phylogenet Evol. 62:214–223.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.