Genetic diversities of MT-ND1 and MT-ND2 genes are associated with high-altitude adaptation in yak

References

• Akouchekian M, Houshmand M, Akbari MHH, Kamalidehghan B, Dehghan M. 2011. Analysis of mitochondrial ND1 gene in human colorectal cancer. J Res Med Sci. 16:50–55.
   PubMed Web of Science ®Google Scholar
• Baradaran R, Berrisford JM, Minhas GS, Sazanov LA. 2013. Crystal structure of the entire respiratory complex I. Nature. 494:443–448.
   PubMed Web of Science ®Google Scholar
• Brown MD, Voljavec AS, Lott MT, Torroni A, Yang CC, Wallace DC. 1992. Mitochondrial DNA complex I and III mutations associated with Leber's hereditary optic neuropathy. Genetics. 130:163–173.
   PubMed Web of Science ®Google Scholar
• Chae YC, Caino MC, Lisanti S, Ghosh JC, Dohi T, Danial NN, Villanueva J, Ferrero S, Vaira V, Santambrogio L, et al. 2012. Control of tumor bioenergetics and survival stress signaling by mitochondrial HSP90s. Cancer Cell. 22:331–344.
   PubMed Web of Science ®Google Scholar
• Chepelev NL, Willmore WG. 2011. Regulation of iron pathways in response to hypoxia. Free Radic Biol Med. 50:645–666.
   PubMed Web of Science ®Google Scholar
• Gnaiger E. 2003. Oxygen conformance of cellular respiration. A perspective of mitochondrial physiology. Adv Exp Med Biol. 543:39–55.
   PubMed Web of Science ®Google Scholar
• Green DR, Reed JC. 1998. Mitochondria and apoptosis. Science. 281:1309
   PubMed Web of Science ®Google Scholar
• Guo SC, Savolainen P, Su JP, Zhang Q, Qi D, Zhou J, Zhang Y, Zhao XQ, Liu JQ. 2006. Origin of mitochondrial DNA diversity of domestic yaks. BMC Evol Biol. 6:1.
   PubMed Web of Science ®Google Scholar
• Gusdon AM, Votyakova TV, Mathews CE. 2008. mt-Nd2a suppresses reactive oxygen species production by mitochondrial complexes I and III. J Biol Chem. 283:10690–10697.
   PubMed Web of Science ®Google Scholar
• Hecht HH, Kuida H, Lange RL, Horne JL, Brown AM. 1962. Brisket disease. III. Clinical features and hemodynamic observations in altitude-dependent right heart failure of cattle. Am J Med. 32:171–183.
   PubMed Web of Science ®Google Scholar
• Ji FY, Sharpley MS, Derbeneva O, Alves LS, Qian P, Wang YL, Chalkia D, Lvova M, Xu JC, Yao W, et al. 2012. Mitochondrial DNA variant associated with Leber hereditary optic neuropathy and high-altitude Tibetans. Proc Natl Acad Sci USA. 109:7391–7396.
   PubMed Web of Science ®Google Scholar
• Johns DR, Berman J. 1991. Alternative, simultaneous complex I mitochondrial DNA mutations in Leber's hereditary optic neuropathy. Biochem Biophys Res Commun. 174:1324.
   PubMed Web of Science ®Google Scholar
• Kang BY, Choi H, Kwon J, Lee JK. 2010. The 5178C/A and 16189T/C polymorphisms of mitochondrial DNA in Korean men and their associations with blood iron metabolism. Mol Biol Rep. 37:4051–4057.
   PubMed Web of Science ®Google Scholar
• Kang LL, Zheng HX, Cheng F, Yan S, Liu K, Qin ZD, Liu LJ, Zhao ZP, Li L, Wang XF, et al. 2013. mtDNA lineage expansions in sherpa population suggest adaptive evolution in Tibetan Highlands. Mol Biol Rep. 30:2579–2587.
   Google Scholar
• Kelley DE, Jing H, Menshikova EV, Ritov VB. 2002. Dysfunction of mitochondria in human skeletal muscle in Type 2 Diabetes. Diabetes. 51:2944–2950.
   PubMed Web of Science ®Google Scholar
• Kokaze A, Ishikawa M, Matsunaga N, Yoshida M, Sekine Y, Teruya K, Takeda N, Sumiya Y, Uchida Y, Takashima Y. 2001. Association of the mitochondrial DNA 5178 A/C polymorphism with serum lipid levels in the Japanese population. Hum Genet. 109:521–525.
   PubMed Web of Science ®Google Scholar
• Lancet T. 1995. A mitochondrial mutation at nt 9101 in the ATP synthase 6 gene associated with deficient oxidative phosphorylation in a family with Leber hereditary optic neuroretinopathy. Am J Hum Genet. 56:1238–1240.
   PubMed Web of Science ®Google Scholar
• Luo Y, Gao W, Chen Y, Liu F, Gao Y. 2012. Rare mitochondrial DNA polymorphisms are associated with high altitude pulmonary edema (HAPE) susceptibility in Han Chinese. Wilderness Environ Med. 23:128–132.
   PubMed Web of Science ®Google Scholar
• Magnon C, Galaup A, Mullan B, Rouffiac V, Bidart JM, Griscelli F, Opolon P, Perricaudet M. 2005. Canstatin acts on endothelial and tumor cells via mitochondrial damage initiated through interaction with alphavbeta3 and alphavbeta5 integrins. Cancer Res. 65:4353–4361.
   PubMed Web of Science ®Google Scholar
• Midzak AS, Chen H, Aon MA, Papadopoulos V, Zirkin BR. 2014. ATP synthesis, mitochondrial function, and steroid biosynthesis in rodent primary and tumor leydig cells. Biol Reprod. 84:976–985.
   Google Scholar
• Mimaki M, Wang X, Mckenzie M, Thorburn DR, Ryan MT. 2012. Understanding mitochondrial complex I assembly in health and disease. Biochim Biophys Acta. 1817:851–862.
   PubMed Web of Science ®Google Scholar
• Mukae S, Aoki S, Itoh S, Sato R, Nishio K, Iwata T, Katagiri T. 2003. Mitochondrial 5178A/C genotype is associated with acute myocardial infarction. Circ J. 67:16–20.
   PubMed Web of Science ®Google Scholar
• Newman NJ. 1993. Leber's hereditary optic neuropathy. New genetic considerations. Arch Neurol. 50:540–548.
   PubMed Web of Science ®Google Scholar
• Newman JH, Holt TN, Hedges LK, , Womack B, Memon SS, Willers ED, Wheeler L, Phillips JA, III, Hamid R. 2011. High-altitude pulmonary hypertension in cattle (brisket disease): candidate genes and gene expression profiling of peripheral blood mononuclear cells. Pulm Circ. 1:462–469.
   PubMedGoogle Scholar
• Parrella P, Xiao Y, Fliss MS, Montserrat SC, Mazzarelli P, Rinaldi M, Nicol T, Gabrielson E, Cuomo C, Cohen D. 2001. Detection of mitochondrial DNA mutations in primary breast cancer and fine-needle aspirates. Cancer Res. 61:7623–7626.
   PubMed Web of Science ®Google Scholar
• Penta JS, Johnson F, Wachsman JT, Copeland WC. 2001. Mitochondrial DNA in human malignancy. Mutat Res Rev Mutat Res. 488:119–133.
   PubMed Web of Science ®Google Scholar
• Peyssonnaux C, Zinkernagel AS, Schuepbach RA, Rankin E, Vaulont S, Haase VH, Nizet V, Johnson RS. 2007. Regulation of iron homeostasis by the hypoxia-inducible transcription factors (HIFs). J Clin Invest. 117:1926–1932.
   PubMed Web of Science ®Google Scholar
• Polyak K, Li Y, Zhu H, Lengauer C, Willson JK, Markowitz SD, Trush MA, Kinzler KW, Vogelstein B. 1998. Somatic mutations of the mitochondrial genome in human colorectal tumours. Nature Genet. 20:291–293.
   PubMed Web of Science ®Google Scholar
• Qiu Q, Zhang G, Ma T, Qian W, Wang J, Ye Z, Cao C, Hu Q, Kim J, Larkin DM, et al. 2012. The yak genome and adaptation to life at high altitude. Nature Genet. 44:946–949.
   PubMed Web of Science ®Google Scholar
• Schaller GB. 1998. Wildlife of the Tibetan steppe. Chicago: University of Chicago Press.
   Google Scholar
• Schauer M, Kottek T, Schönherr M, Bhattacharya A, Ibrahim SM, Hirose M, Kohling R, Fuellen G, Schmitz U, Kunz M 2015. A mutation in the NADH-dehydrogenase subunit 2 suppresses fibroblast aging. Oncotarget. 6:8552.
   PubMed Web of Science ®Google Scholar
• Scott GR, Richards JG, Milsom WK. 2009. Control of respiration in flight muscle from the high-altitude bar-headed goose and low-altitude birds. Am J Physiol Regul Integr Comp Physiol. 297:R1066–R1074.
   PubMed Web of Science ®Google Scholar
• Scott GR, Schulte PM, Egginton S, Scott AL, Richards JG, Milsom WK. 2011. Molecular evolution of cytochrome c oxidase underlies high-altitude adaptation in the bar-headed goose. Mol Biol Evol. 28:351–363.
   PubMed Web of Science ®Google Scholar
• Sun J, Zhong H, Chen S-Y, Yao Y-G, Liu Y-P. 2013a. Association between MT-CO3 haplotypes and high-altitude adaptation in Tibetan chicken. Gene. 529:131–137.
   PubMed Web of Science ®Google Scholar
• Takagi K, Yamada Y, Gong JS, Song T, Yokota M, Tanaka M. 2004. Association of a 5178C–>A (Leu237Met) polymorphism in the mitochondrial DNA with a low prevalence of myocardial infarction in Japanese individuals. Atherosclerosis. 175:281–286.
   PubMed Web of Science ®Google Scholar
• Tanaka M, Gong J-S, Zhang J, Yoneda M, Yagi K. 1998. Mitochondrial genotype associated with longevity. Lancet. 351:185–186.
   PubMed Web of Science ®Google Scholar
• Tang D-L, Zhou X, Li X, Zhao L, Liu F. 2006. Variation of mitochondrial gene and the association with type 2 diabetes mellitus in a Chinese population. Diabetes Res Clin Pract. 73:77–82.
   PubMed Web of Science ®Google Scholar
• Torroni A, Miller JA, Moore LG, Zamudio S, Zhuang JG, Droma T, Wallace DC. 1994. Mitochondrial DNA analysis in Tibet: implications for the origin of the Tibetan population and its adaptation to high altitude. Am J Phys Anthropol. 93:189–199.
   PubMed Web of Science ®Google Scholar
• Wallace DC, Fan W, Procaccio V. 2010. Mitochondrial energetics and therapeutics. Annu Rev Pathol. 5:297–348.
   PubMed Web of Science ®Google Scholar
• Wang D, Taniyama M, Suzuki Y, Katagiri T, Ban Y. 2001. Association of the mitochondrial DNA 5178A/C polymorphism with maternal inheritance and onset of type 2 diabetes in Japanese patients. Exp Clin Endocrinol Diabetes. 109:361–364.
   PubMed Web of Science ®Google Scholar
• Wang JH, Shan YJ, Cong YW, Wu LJ, Yuan XL, Zhao ZH, Wang SQ, Chen JP. 2003. [Identification of differentially expressed genes of acute hypoxia-treated HepG2 cells and hypoxia-acclimatized HepG2 cells]. Acta Physiol Sin. 55:324–330.
   PubMedGoogle Scholar
• Wang K, Takahashi Y, Gao ZL, Wang GX, Chen XW, Goto J, Lou JN, Tsuji S. 2009. Mitochondrial ND3 as the novel causative gene for Leber hereditary optic neuropathy and dystonia. Neurogenetics. 10:337–345.
   PubMed Web of Science ®Google Scholar
• Wang XY, He Y, Li JY, Bao HG, Wu C. 2013. Association of a missense nucleotide polymorphism in the MT-ND2 gene with mitochondrial reactive oxygen species production in the Tibet chicken embryo incubated in normoxia or simulated hypoxia. Anim Genet. 44:472–475.
   PubMed Web of Science ®Google Scholar
• Weir EK, Tucker A, Reeves JT, Will DH, Grover RF. 1974. The genetic factor influencing pulmonary hypertension in cattle at high altitude. Cardiovasc Res. 8:745–749.
   PubMed Web of Science ®Google Scholar
• Wiener G, H, Jianlin L. Ruijun. 2003. The yak. FAO Regional Office for Asia and the Pacific.
   Google Scholar
• Will DH, Hicks JL, Card CS, Alexander AF. 1975. Inherited susceptibility of cattle to high-altitude pulmonary hypertension. J Appl Physiol. 38:491–494.
   PubMed Web of Science ®Google Scholar
• Yu P, Yu D-M, Liu D-M, Wang K, Tang X-Z. 2004. Relationship between mutations of mitochondrial DNA ND1 gene and type 2 diabetes. Chin Med J. 117:985–989.
   PubMed Web of Science ®Google Scholar
• Yusnita Y, Norsiah MD, Rahman A. 2010. Mutations in mitochondrial NADH dehydrogenase subunit 1 (mtND1) gene in colorectal carcinoma. Malays J Pathol. 32:103–110.
   PubMedGoogle Scholar
• Zhao XL, Wu N, Zhu Q, Gaur U, Gu T, Li DY. 2016. High-altitude adaptation of Tibetan chicken from MT-COI and ATP-6 perspective. Mitochondrial DNA A DNA Mapp Seq Anal. 27:3280–3288.
   PubMedGoogle Scholar