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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 29, 2018 - Issue 4
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Research Article

DNA barcodes and insights into the phylogenetic relationships of Corvidae (Aves: Passeriformes)

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Pages 529-534 | Received 09 Feb 2017, Accepted 01 Apr 2017, Published online: 13 Apr 2017

References

  • Amadon D. 1944. The genera of Corvidae and their relationships. Am Mus. 1251:1–21.
  • AOU. 1998. Check-list of North American Birds. Washington DC: American Ornithologists’ Union.
  • Arif IA, Khan HA, Shobrak M, Williams J. 2011. Cytochrome c oxidase subunit I barcoding of the bee-eater (Merops orientalis). Genet Mol Res. 10:3992–3998.
  • Bonaccorso E, Peterson AT, Navarro-Sigüenza AG, Fleischer RC. 2010. Molecular systematics and evolution of the cyanocorax jays. Mol Phylogenet Evol. 54:897–909.
  • Cai YS, Yue BS, Jiang WX, Xie SQ, Li J, Zhou M. 2010. DNA barcoding on subsets of three families in Aves. Mitochondrial DNA. 21:132–137.
  • Cibois A, Pasquet E. 1999. Molecular analysis off the phylogeny off 11 genera off the Corvidae. IBIS. 141:297–306.
  • Cibois A. 2003. Mitochondrial DNA phylogeny of babblers (Corvidae). AUK. 120:35–54.
  • Clayton N, Nathan E. 2005. Corvid cognition. Curr Biol. 15:80–81.
  • Coissac E, Hollingsworth PM, Lavergne S, Taberlet P. 2016. From barcodes to genomes: extending the concept of DNA barcoding. Mol Ecol. 25:1423–1428.
  • Ekman J, Ericson PGP. 2006. Out of Gondwanaland; the evolutionary history of cooperative breeding and social behaviour among crows, magpies, jays and allies. Proc R Soc London Ser B Biol Sci. 273:1117–1125.
  • Ericson PGP, Jansén AL, Johansson US, Ekman J. 2005. Intergeneric relationships of the crows, jays, magpies and allied groups (Aves: Corvidae) based on nucleotide sequence data. J Avian Biol. 36:222–234.
  • Evans KM, Wortley AH, Mann DG. 2007. An assessment of potential diatom ‘barcode’ genes (coxI, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta). Protist. 158:349–364.
  • Feldman CR, Omland KE. 2005. Phylogenetics of the common raven complex (Corvus: Corvidae) and the utility of ND4, COI and intron 7 of the β-fibrinogen gene in avian molecular systematics. Zool Scr. 34:145–156.
  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:783–791.
  • Hebert PDN, Cywinska A, Ball SL, deWaard JR. 2003b. Biological identifications through DNA barcodes. Proc Biol Sci. 270:313–321.
  • Hebert PDN, Ratnasingham S, deWaard JR. 2003a. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc London Ser B Biol Sci. 270:96–99.
  • Hellmayr CE. 1934. Catalogue of the birds of the Americas and the Adjacent Islands. Chicago (IL): Field Museum of Natural History.
  • Hoeck PEA, Wolak ME, Switzer RA, Kuehler CM, Lieberman AA. 2015. Effects of inbreeding and parental incubation on captive breeding success in hawaiian crows. Biol Conserv. 184:357–364.
  • Hope S. 1989. Phylogeny of the avian family Corvidae [dissertation]. City University, New York, NY.
  • Huang ZH, Yang CZ, Ke DH. 2016. DNA barcoding and phylogenetic relationships in Anatidae. Mitochondrial DNA A DNA Mapp Seq Anal. 27:1042–1044.
  • Johnsen A, Rindal E, Ericson PGP, Zuccon D, Kerr KCR, Stoeckle MY, Lifjeld JT. 2010. DNA barcoding of Scandinavian birds reveals divergent lineages in trans-Atlantic species. J Ornithol. 151:565–578.
  • Kerr KC. 2011. Searching for evidence of selection in avian DNA barcodes. Mol Ecol Resour. 11:1045–1055.
  • Kerr KCR, Birks SM, Kalyakin MV, Red’kin YA, Koblik EA, Hebert PDH. 2009. Filling the gap-COI barcode resolution in eastern Palearctic birds. Front Zool. 6:1–13.
  • Kerr KCR, Stoeckle MY, Dove CJ, Weigt LA, Francis CM, Hebert PHD. 2007. Comprehensive DNA barcode coverage of North American birds. Mol Ecol Notes. 7:535–543.
  • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions though comparative studies of nucleotide sequences. J Mol Evol. 16:111–120.
  • Li X, Jiang L, Jing L, Hu X, Huang Z. 2016. The complete mitochondrial genome of the American crow, Corvus brachyrhynchos (Passeriformes, Corvidae). Mitochondrial DNA. 27:4213–4214.
  • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452.
  • Mabragaña E, Hanner R, Zhang J, Castro MG. 2011. DNA barcoding identifies argentine fishes from marine and brackish waters. Plos One. 6:e28655.
  • Manegold A. 2008. Morphological characters of the tongue skeleton reveal phylogenetic relationships within the Corvidae (Oscines, Passeriformes). EMU. 108:321–330.
  • Morinha F, Clemente C, Cabral JA, Lewicka MM, Travassos P, Carvalho D, Dávila JA, Santos M, Blanco G, Bastos E. 2016. Next-generation sequencing and comparative analysis of Pyrrhocorax pyrrhocorax and Pyrrhocorax graculus (Passeriformes: Corvidae) mitochondrial genomes. Mitochondrial DNA A DNA Mapp Seq Anal. 27:2278–2281.
  • Nilsson MA, Gullberg A, Spotorno AE, Arnason U, Janke A. 2003. Radiation of extant marsupials after the k/t boundary: evidence from complete mitochondrial genomes. J Mol Evol. 57:S3–S12.
  • Pinto IS, Chagas BD, Rodrigues AA, et al. 2015. DNA barcoding of Neotropical sand flies (Diptera, Psychodidae, Phlebotominae): species identification and discovery within Brazil. Plos One. 10:e0140636.
  • Prior H, Schwarz A, Güntürkün O. 2008. Mirror-induced behavior in the magpie (Pica pica): evidence of self-recognition. Plos Biol. 6:e202.
  • Posada D, Buckley TR. 2004. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol. 53:793–808.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817–818.
  • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425.
  • Saitoh T, Sugita N, Someya S, Iwami Y, Kobayashi S, Kamigaichi H, Higuchi A, Asai S, Yamamoto Y, Nishiumi I. 2015. DNA barcoding reveals 24 distinct lineages as cryptic bird species candidates in and around the Japanese archipelago. Mol Ecol Resour. 15:177–186.
  • Saunders MA, Edwards SV. 2000. Dynamics and phylogenetic implications of mtDNA control region sequences in New World jays (Aves: Corvidae). J Mol Evol. 51:97–109.
  • Schindel DE, Stoeckle MY, Milensky C, Trizna M, Schmidt B, Gebhard C, Graves G. 2011. Project description: DNA barcodes of bird species in the national museum of natural history, Smithsonian institution, USA. Zookeys. 152:87–92.
  • Shen YY, LL, Sun YB, Yue BS, Yang XJ, Murphy RW, Zhang YP. 2010. A mitogenomic perspective on the ancient, rapid radiation in the galliformes with an emphasis on the Phasianidae. BMC Evol Biol. 10:132.
  • Sibley CG, Ahlquist JE. 1990. Phylogeny and classification of birds. New Haven (CT): Yale University Press.
  • Strimmer K, Haeseler AV. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol. 13:964–969.
  • Sutton JM, Gilbert PW. 1942. The Brown Jay’s furcular pouch. Condor. 44:160–165.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30:2725–2729.
  • Tavares ES, Gonçalves P, Miyaki CY, Baker AJ. 2011. DNA barcode detects high genetic structure within neotropical bird species. Plos One. 6:e28543.
  • Thiemann TC, Brault AC, Ernest HB, Reisen WK. 2012. Development of a high-throughput microsphere-based molecular assay to identify 15 common bloodmeal hosts of culex mosquitoes. Mol Ecol Resour. 12:238–246.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876–4882.
  • Waugh J. 2007. DNA barcoding in animal species: progress, potential and pitfalls. Bioessays. 29:188.
  • Williams DA, Lawton MF, Lawton RO. 1994. Population growth, range expansion, and competition in the cooperatively breeding brown jay, Cyanocorax morio. Anim Behav. 48:309–322.

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