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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 29, 2018 - Issue 4
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Research Article

Morphological and genetic analyses of the first record of longrakered trevally, Ulua mentalis (Perciformes: Carangidae) and of the pinjalo snapper, Pinjalo pinjalo (Perciformes: Lutjanidae) in the Odisha coast, Bay of Bengal

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Pages 552-560 | Received 10 Jan 2017, Accepted 16 Apr 2017, Published online: 03 May 2017

References

  • Amaral AR, Sequeira M, Coelho MM. 2007. A first approach to the usefulness of cytochrome c oxidase I barcodes in the identification of closely related delphinid cetacean species. Mar Freshw Res. 58:505–510.
  • Arvedlund M. 2009. First records of unusual marine fish distributions: can they predict climate changes? J Mar Biol Assoc UK. 89:863–866.
  • Bhattacharjee MJ, Laskar BA, Dhar B, Ghosh SK. 2012. Identification and re-evaluation of freshwater catfishes through DNA barcoding. PLoS One. 7: e49950
  • Borisenko AB, Lim BK, Ivanova NV, Hanner RH, Hebert PDN. 2008. DNA barcoding in surveys of small mammal communities: a field study in Suriname. Mol Ecol Resour. 8:471–479.
  • Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. 2014. BEAST 2: a software platform for bayesian evolutionary analysis. PLoS Computat Biol. 10:e1003537
  • Clare EL, Lim BK, Engstrom MD, Eger JL, Hebert PDN. 2007. DNA barcoding of neotropical bats: species identification and discovery within Guyana. Mol Ecol Notes. 7:184–190.
  • Costa FO, Carvalho GR. 2007. The barcode of life initiative: synopsis and prospective societal impacts of DNA barcoding of fish. Genomics Soc Policy. 3:29–40.
  • Cywinska A, Hunter FF, Hebert PDN. 2006. Identifying Canadian mosquito species through DNA barcodes. Med Vet Entomol. 20:4213–4424.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792–1797.
  • Eissa AE, Zaki MM. 2011. The impact of global climatic changes on the aquatic environment. Procedia Environ Sci. 4:251–259.
  • Eschmeyer WN, ed. (2010). Catalog of Fishes electronic version [Internet]. Available from: http://research.calacademy.org/ichthyology/catalog/fishcatmain.asp
  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:783–779.
  • Froese R, Pauly D. (2009). Fish Base. World Wide Web electronic publication [Internet]. Available from: http://www.fishbase.org, version (02/ 2009)
  • Froese R, Pauly D. (2016). Fish Base. World Wide Web electronic publication. Ver. 10/2016 Available from: http://www.fishbase.org
  • Golding GB, Hanner R, Hebert PDN. 2009. Preface. Mol Ecol Res. 9(Suppl. 1):iv–vi.
  • Greenstone MH, Rowley DH, Heimbach U, Lundgren JG, Pfannenstiel RS, Rehner SA. 2005. Barcoding generalist predators by polymerase chain reaction: carabids and spiders. Mol Ecol. 14: 3247–3266.
  • Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN. 2006. DNA barcodes distinguish species of tropical Lepidoptera. Proc Natl Acad Sci USA. 103:968–971.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95–98.
  • Hanner R, Floyd R, Bernard A, Collette BB, Shivji M. 2011. DNA barcoding of billfishes. Mitochondrial DNA. 22:27–36.
  • Hebert PDN, Cywinska A, Ball SL. 2003a. Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci. 270:313–321.
  • Hebert PDN, Ratnasingham S, deWaard JR. 2003b. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B Biol Sci. 270(Suppl 1):96–99.
  • Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. 2004. Identification of birds through DNA barcodes. PLoS Biol. 2:1657–1663.
  • Hogg ID, Hebert PDN. 2004. Biological identification of springtails (Collenbola: Hexapoda) from Canadian arctic, using mitochondrial DNA barcodes. Can J Zool. 82:1–6.
  • Janzen DH, Hajibabaei M, Burns JM. 2005. Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philos Trans R Soc Lond B Biol Sci. 1462:1835–1846.
  • Järnegren J, Schander C, Sneli JA, Ronningen V, Young CM. 2007. Four genes, morphology and ecology: distinguishing a new species of Acesta (Mollusca; Bivalvia) from the Gulf of Mexico. Mar Biol. 152:43–55.
  • Kerr KCR, Lijtmaer DA, Barreira AS, Hebert PDN, Tubaro PL. 2009. Probing evolutionary patterns in neotropical birds through DNA barcodes. PLoS One. 4:e4379.
  • Kochzius M. (2009). Trends in fishery genetics. In Beamish RJ and BJ Rothschild, Editors. The future of fisheries science in North America. The Netherlands: Fish and Fisheries: Springer, vol. 31, pp. 453–493.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
  • Kundu S, Das KC, Ghosh SK. 2013. Taxonomic rank of Indian tortoise: revisit with DNA barcoding perspective. DNA Barcodes. 1:39–45.
  • Lakra WS, Verma MS, Goswami M, Lal KK, Mohindra V, Punia P, Gopalakrishnan A. 2011. DNA barcoding Indian marine fishes. Mol Ecol Res. 11:60–71.
  • Laskar BA, Bhattacharjee MJ, Dhar B, Mahadani P, Kundu S, Ghosh SK. 2013. The species dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): DNA barcoding in clarifying the riddle. PLoS One. 8: e53704.
  • Lim BK. 2012. Preliminary assessment of neotropical mammal DNA barcodes: an underestimation of biodiversity. Open Zool J. 5:10–17.
  • Lukhtanov VA, Sourakov A, Zakharov EV, Hebert PDN. 2009. DNA barcoding Central Asian butterflies: increasing geographical dimension does not significantly reduce the success of species identification. Mol Ecol Res. 9:1302–1310.
  • Maddison WP. 1991. Squared-change parsimony reconstructions of ancestral states for continuous-valued characters on a phylogenetic tree. Syst Zool. 40:304–314.
  • Miller TL, Cribb TH. 2007. Phylogenetic relationships of some common Indo-Pacific snappers (Perciformes: Lutjanidae) based on mitochondrial DNA sequences, with comments on the taxonomic position of the Caesioninae. Mol Phylogenet Evol. 44:450.
  • Mohsin AKM, Ambak MA. 1996. Marine fishes and fisheries of Malaysia and neighbouring countries. Serdang: Universiti Pertanian Malaysia Press, p. 744.
  • Nelson JS. 2006. Fishes of the World. 4th Ed. Hoboken (NJ): John Wiley & Sons.
  • Occhipinti-Ambrogi A. 2007. Global change and marine communities: alien species and climate change. Marine Poll Bull. 55:342–352.
  • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol. 55:595–606.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817–818.
  • Randall JE, Allen GR, Anderson Jr. WD. 1987. Revision of the Indo-Pacific lutjanid genus Pinjalo, with description of a new species. Indo-Pacific Fishes. p. 17.
  • Ribeiro AO, Caires RA, Mariguela TC, Pereira LHG, Hanner R, Oliveira C. 2012. DNA barcodes identify marine fishes of São Paulo State, Brazil. Mol Ecol Res. 12:1012–1020.
  • Richly E, Leister D. 2004. NUMTs in sequenced eukaryotic genomes. Mol Biol Evol. 21:1081–1084.
  • Saccone C, Giorgic D, Gissi C, Pesol G, Reyes A. 1999. Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene. 238:195–209.
  • Sambrook SJ, Russel DW, Janssen KA, Irwuin NJ. 2001. Molecular cloning, a laboratory manual. 3rd Ed. New York: Cold Spring Harbor Laboratory Press.
  • Schindel DE, Stoeckle MY, Milensky CM, Trizna M, Schmidt BK, Gebhard CA, Graves GR. 2011. DNA barcodes of bird species in the National Museum of Natural History. Smithsonian Institution, USA. ZooKeys. 152:87–91.
  • Smith MA, Wood DM, Janzen DH, Hallwachs W, Hebert PDN. 2007. DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proc Natl Acad Sci USA. 104:4967–4972.
  • Talwar PK, Kacker RK. 1984. Commercial sea fishes of India. Calcutta: Zoological Survey of India, p. 997.
  • Tamura K, Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. 2012. Estimating divergence times in large molecular phylogenies. Proceedings of the National Academy of Sciences USA. 109:19333–19338.
  • Tavares ES, Baker AJ. 2008. Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds. BMC Evol Biol. 8:81.
  • Teletchea F. 2009. Molecular identification methods of fish species: reassessment and possible applications. Rev Fish Biol Fish. 19:265–293.
  • Trivedi S, Ghosh SK, Choudhury A. 2011. Cytochrome c oxidase subunit 1 (COI) Sequence of Macrobrachium rosenbergii collected from Sunderbans, India. J Environ Sociobiol. 8:169–172.
  • Trivedi S, Ghosh SK, Choudhury A. 2012. Mitochondrial DNA sequence of Cytochrome c oxidase subunit 1 (COI) region of an oyster Crassostrea cuttakensis collected from Sunderbans. J Environ Sociobiol. 9:13–16.
  • Trivedi S, Affan R, Alessa AHA. 2014. DNA barcoding of Red Sea fishes from Saudi Arabia – the first approach. DNA Barcodes. 2:17–20.
  • Trivedi S, Aloufi AA, Ansari AA, Ghosh SK. 2016. Role of DNA barcoding in marine biodiversity assessment and conservation: an update. Saudi J Biol Sci. 23:161–171.
  • Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PD. 2005. DNA Barcoding Australia's fish species. Philos Trans R Soc Lond B Biol Sci. 360:1847–1857.
  • Xia X. 2013. DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution. Mol Biol Evol. 30: 1720–1728.
  • Yancy HF, Zemlak TS, Mason JA. 2008. Potential use of DNA barcodes in regulatory science: applications of the regulatory fish encyclopedia. J Food Protect. 71: 210–217.
  • Yoo HS, Eah JY, Kim JS. 2006. DNA barcoding Korean birds. Mol Cells. 22: 323–327.
  • Zhang RL, Zhang B. 2014. Prospects of using DNA barcoding for species identification and evaluation of the accuracy of sequence databases for ticks (Acari: Ixodida). Ticks Tick-Borne Dis. 5:352–358.

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