First molecular evidence of Mus musculus bactrianus in Nepal inferred from the mitochondrial DNA cytochrome B gene sequences

References

• Adhikari P, Park SM, Kim TW, Lee JW, Kim GR, Han SH, Oh HS. 2016. Seasonal and altitudinal variation in roe deer (Capreolus pygargus tianschanicus) diet on Jeju Island, South Korea. J Asia Pac Biod. 9:422–428.
   Google Scholar
• Bastos AD, Nair D, Taylor PJ, Brettschneider H, Kirsten F, Mostert E, Maltitz E, Lamb JM, Hooft P, Belmain SR, et al. 2011. Genetic monitoring detects an overlooked cryptic species and reveals the diversity and distribution of three invasive Rattus congeners in South Africa. BMC Genet. 12:26.
   PubMed Web of Science ®Google Scholar
• Boursot P, Auffray JC, Britton-Davidian J, Bonhomme F. 1993. The evolution of house mice. Annu Rev Ecol Evol Syst. 24:119–152.
   Google Scholar
• Boursot P, Din W, Anand R, Darviche D, Dod B, Von Deimling F, Talwar GP, Bonhomme F. 1996. Origin and radiation of the house mouse: mitochondrial DNA phylogeny. J Evol Biol. 9:391–415.
   Web of Science ®Google Scholar
• Brown WM, George M, Wilson AC. 1979. Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA. 76:1967–1971.
   PubMed Web of Science ®Google Scholar
• De Mandal S, Chhakchhuak L, Gurusubramanian G, Kumar NS. 2014. Mitochondrial markers for identification and phylogenetic studies in insects – a review. DNA Barco. 2:1–9.
   Google Scholar
• Din W, Anand R, Boursot P, Darviche D, Dod B, Jouvin-Marche E, Orth A, Talwar GP, Cazenave PA, Bonhomme F. 1996. Origin and radiation of the house mouse: clues from nuclear genes. J Evol Biol. 9:519–539.
   Web of Science ®Google Scholar
• Ellerman JR. 1961. Rodentia. In: Roonwal ML, editor. The fauna of India including Pakistan, Burma and Ceylon, 2nd ed. Calcutta: Baptist Mission Press; p. 485–884.
   Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:783–791.
   PubMed Web of Science ®Google Scholar
• Fry TB. 1925. Report No. 37a: Nepal. Bombay natural history society’s mammal survey of India, Burma, and Ceylon. J Bomb Nat Hist Soc. 30:525–530.
   Google Scholar
• Green MJB. 1981. A check-list and some notes concerning the mammals of the Langtang National Park, Nepal. J Bomb Nat Hist Soc. 78:77–87.
   Google Scholar
• Hamid SH, Darvish J, Rastegar-Pouyani J, Mahmoudi A. 2017. Subspecies differentiation of the house mouse Mus musculus Linnaeus, 1758 in the center and East of the Iranian plateau and Afghanistan. Mammalia. 81:147–168.
   Web of Science ®Google Scholar
• Hardouin EA, Orth A, Teschke M, Darvish J, Tautz D, Bonhomme F. 2015. Eurasian house mouse (Mus musculus L.) differentiation at microsatellite loci identifies the Iranian plateau as a phylogeographic hotspot. BMC Evol Biol. 15:26.
   PubMed Web of Science ®Google Scholar
• Hodgson BH. 1841. Classified catalogue of mammals of Nepal, corrected to the end of 1840, first printed in 1832. Calcu J Nat Hist. 2:212–221.
   Google Scholar
• Hodgson BH. 1845. On the rats, mice, and shrews of the central region of Nepal. Ann Mag Nat Hist. 15:266–270.
   Google Scholar
• Jacobs LL, Flynn LJ. 2005. Of mice… again: the Siwalik rodent record, murine distribution, and molecular clocks. In: Lieberman D, Smith R, Kelley J, editors. Interpreting the past: essays on human, primate and mammal evolution. Leiden: Brill Academic Publisher; p. 63–80.
   Google Scholar
• Jing M, Yu HT, Bi X, Lai YC, Jiang W, Huang L. 2014. Phylogeography of Chinese house mice (Mus musculus musculus/castaneus): distribution, routes of colonization and geographic regions of hybridization. Mol Ecol. 23:4387–4405.
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinfor Appl Note. 23:2947–2948.
   PubMed Web of Science ®Google Scholar
• Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452.
   PubMed Web of Science ®Google Scholar
• Marshall JT. 1977. A synopsis of Asian species of Mus (Rodentia: Muridae). Bull Am Muse Natu Hist. 158:173–220.
   Google Scholar
• Mekada K, Koyasu K, Harada M, Narita Y, Shrestha KC, Oda SI. 2001. Faunal survey of small mammals in central Nepal, with reference to the distribution of the genus Soriculus (Insectivora, Mammalia). Biogeography. 3:33–40.
   Google Scholar
• Musser GG, Carleton MD. 2005. Super family Muridae. In: Wilson DE, Reeder DM, editors. Mammal species of the world, 3rd ed. Baltimore (MD): Johns Hopkins University Press; p. 894–1531.
   Google Scholar
• Nabholz B, Glemin S, Galtier N. 2008. Strong variations of mitochondrial mutation rate across mammals-the longevity hypothesis. Mol Biol Evol. 25:120–130.
   PubMed Web of Science ®Google Scholar
• Prager EM, Orrego C, Sage RD. 1998. Genetic variation and phylogeography of central Asian and other house mice including a major new mitochondrial lineage in Yemen. Genetics. 150:835–861.
   PubMed Web of Science ®Google Scholar
• Rios E, Alvarez-Castaneda ST. 2012. Pelage color variation in pocket gophers (Rodentia: Geomyidae) in relation to sex, age and differences in habitat. Mamm Biol. 77:160–165.
   Web of Science ®Google Scholar
• Rowe KC, Reno ML, Richmond DM, Adkins RM, Steppan SJ. 2008. Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): multilocus systematics of the old endemic rodents (Muroidea: Murinae). Mol Phylogenet Evol. 47:84–101.
   PubMed Web of Science ®Google Scholar
• Sakuma Y, Ranorosoa MC, Kinoshita G, Shimoji H, Tsuchiya K, Ohdachi SD, Arai S, Tanaka C, Ramino H, Suzuki H. 2016. Variation in the coat-color-controlling genes, Mc1r and Asip, in the house mouse Mus musculus from Madagascar. Mamm Study. 41:131–140.
   Web of Science ®Google Scholar
• Sandoval SML, Barquez RM, Colombo EM, Sandoval JD. 2017. Intra-specific pelage color variation in a South American small rodent species. Braz J Biol. 77:1–11.
   PubMed Web of Science ®Google Scholar
• Searle JB, Jamieson PM, Gunduz I, Stevens MI, Jones EP, Gemmill CEC, King CM. 2009. The diverse origins of New Zealand house mice. Proc Biol Sci. 276:209–217.
   PubMed Web of Science ®Google Scholar
• Stewart JB, Freyer C, Elson JL, Wredenberg A, Cansu Z, Trifunovic A, Larsson NG. 2008. Strong purifying selection in transmission of mammalian mitochondrial DNA. PLoS Biol. 6:e10.
   PubMed Web of Science ®Google Scholar
• Suzuki H, Nunome M, Kinoshita G, Aplin KP, Vogel P, Kryukov AP, Jin ML, Han SH, Maryanto I, Tsuchiya K, et al. 2013. Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA. Heredity. 111:375–390.
   PubMed Web of Science ®Google Scholar
• Suzuki H, Yakimenko LV, Usuda D, Frisman LV. 2015. Tracing the eastward dispersal of the house mouse, Mus musculus. Genes Environ. 37:20.
   PubMedGoogle Scholar
• Tamura K. 1992. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Mol Biol Evol. 9:678–687.
   PubMed Web of Science ®Google Scholar
• Tamura K, Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. 2012. Estimating divergence times in large molecular phylogenies. Proc Natl Acad Sci USA. 109:19333–19338.
   PubMed Web of Science ®Google Scholar
• Terashima M, Furusawa S, Hanzawa N, Tsuchiya K, Suyanto A, Moriwaki K, Yonekawa H, Suzuki H. 2006. Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by genetic markers with maternal, paternal and biparental inheritance. Heredity. 96:128–138.
   PubMed Web of Science ®Google Scholar
• Yonekawa H, Moriwaki K, Gotoh O, Hayashi JI, Watanebe J, Miyashita N, Petras ML, Tagashira Y. 1981. Evolutionary relationships among five subspecies Mus musculus based on restriction enzyme cleavage patterns of mitochondrial DNA. Genetics. 98:801–816.
   PubMed Web of Science ®Google Scholar