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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 29, 2018 - Issue 4
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Research Article

Molecular phylogeny of Loliginidae inferred from mitochondrial DNA sequence variation

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Pages 600-605 | Received 15 Mar 2017, Accepted 27 Apr 2017, Published online: 20 May 2017

References

  • Anderson FE. 2000a. Phylogeny and historical biogeography of the loliginid squids (Mollusca: Cephalopoda) based on mitochondrial DNA sequence data. Mol Phylogenet Evol. 15:191–214.
  • Anderson FE. 2000b. Phylogenetic relationships among loliginid squids (Cephalopoda: Myopsida) based on analyses of multiple data sets. Zool J Linn Soc. 130:603–633.
  • Brierley AS, Allcock AL, Thorpe JP, Clarke MR. 1996. Biochemical genetic evidence supporting the taxonomic separation of Loligo edulis and Loligochinensis (Cephalopoda: Teuthoidea) from the genus Loligo. Marine Biol. 127:97–104.
  • Broughton RE, Dowling TE. 1994. Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera. Genetics. 138:179–190.
  • Chen XJ. 2009. Cephalopods. Beijing: Ocean Press.
  • Chomczynski P, Sacchi N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 162:156–159.
  • Dai L, Zheng X, Kong L, Li Q. 2012. DNA barcoding analysis of Coleoidea (Mollusca: Cephalopoda) from Chinese waters. Mol Ecol Res. 12:437–447.
  • De Luna Sales JB, Shaw PW, Haimovici M, Markaida U, Cunha DB, Ready J, Figueiredo-Ready WM, Schneider H, Sampaio I. 2013. New molecular phylogeny of the squids of the family Loliginidae with emphasis on the genus DoryteuthisNaef, 1912: mitochondrial and nuclear sequences indicate the presence of cryptic species in the southern Atlantic Ocean. Mol Phylogenet Evol. 68:293–299.
  • Dong Z. 1988. Chinese fauna: Mollusca Cephalopoda. Beijing: Science Press.
  • Fields WG. 1962. The structure, development, food relations, reproduction and life history of the squid Loligoopalescens Berry (Doctoral dissertation, Dept. of Biological Sciences, Stanford University).
  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:783–791.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696–704.
  • Lee WJ, Conroy J, Howell WH, Kocher TD. 1995. Structure and evolution of teleost mitochondrial control regions. J Mol Evol. 41:54–66.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817–818.
  • Randi E, Lucchini V. 1998. Organization and evolution of the mitochondrial DNA control region in the avian genus alectoris. J Mol Evol. 47:449–462.
  • Sang CK. 2007. Reproductive biology and ecology of the Loliginid squid, Uroteuthis (Photololigo) duvauceli (ORBIGNY, 1835). Hong Kong waters, PhD. Thesis, University of Hong Kong.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876–4882.
  • Vecchione M, Shea E, Bussarawit S, Anderson F, Alexeyev D, Lu CC, Okutani T, Roeleveld M, Chotiyaputta C, Roper C, et al. 2005. Systematics of Indo-West Pacific Loliginids. Phuket Mar Biol Cent Res Bull. 66:23–26.
  • Vecchione M, Brakoniecki TF, Natsukari Y, Hanlon RT. 1998. A provisional generic classification of the family Loliginidae. Smithsonian Contributions Zool. 215–222.
  • Vences M, Thomas M, Van d. M A, Chiari Y, Vieites DR. 2005. Comparative performance of the 16s rRNA gene in DNA barcoding of amphibians. Front Zool. 2:5–12.
  • Yassin A, Markow TA, Narechania A, O’Grady PM, Desalle R. 2010. The genus drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding. Mol Phylogenet Evol. 57:509–517.

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