Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 29, 2018 - Issue 8
130
Views
1
CrossRef citations to date
0
Altmetric
Research Article

Evidence of shallow mitochondrial divergence in the slender armorhead, Pentaceros wheeleri (Pisces, Pentacerotidae) from the Emperor Seamount Chain

, , &
Pages 1156-1164 | Received 26 Aug 2017, Accepted 03 Jan 2018, Published online: 12 Jan 2018

References

  • Aboim MA. 2005. Population Genetics and Evolutionary History of some Deep-Sea Demersal Fishes from the Azores-North Atlantic [dissertation]. Southampton: University of Southampton.
  • Aboim M, Menezes G, Schlitt T, Rogers A. 2005. Genetic structure and history of populations of the deep-sea fish Helicolenus dactylopterus (Delaroche, 1809) inferred from mtDNA sequence analysis. Mol Ecol. 14:1343–1354.
  • Boehlert G. 1986. Productivity and population maintenance of seamount resources and future research directions. Environment and Resources of Seamounts in the North Pacific. NOAA Tech Report NMFS 43; p. 95–101.
  • Boehlert G, Mundy B. 1993. Ichthyoplankton assemblages at seamounts and oceanic islands. Bull Mar Sci. 53:336–361.
  • Boehlert GW, Sasaki T. 1988. Pelagic biogeography of the armorhead, Pseudopentaceros wheeleri, and recruitment to isolated seamounts in the North Pacific Ocean. Fish Bull. 86:453–466.
  • Boehlert GW, Wilson CD, Mizuno K. 1994. Populations of the Sternoptychid Fish Maurolicus muelleri on Seamounts in the Central North Pacific. Pac Sci. 48:57–69.
  • Borets L. 1980. The distribution and structure of the range of the boarfish Pentaceros richardsoni. J Ichthyol. 20:141–143.
  • Bremer JRA, Baker AJ, Mejuto J. 1995. Mitochondrial DNA control region sequences indicate extensive mixing of swordfish (Xiphias gladius) populations in the Atlantic Ocean. Can J Fish Aquat Sci. 52:1720–1732.
  • Canino MF, Spies IB, Cunningham KM, Hauser L, Grant WS. 2010. Multiple ice-age refugia in pacific cod, Gadus macrocephalus. Mol Ecol. 19:4339–4351.
  • Carlsson J, McDowell J, Díaz-Jaimes P, Carlsson JE, Boles SB, Gold JR, Graves JE. 2004. Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea. Mol Ecol. 13:3345–3356.
  • Cheng Y, Jin X, Shi G, Wang R, Xu T. 2011. Genetic diversity and population structure of miiuy croaker populations in East China Sea revealed by the mitochondrial DNA control region sequence. Biochem Syst Ecol. 39:718–724.
  • Clark M, Bull B, Tracey D. 2001. The estimation of catch levels for new orange roughy fisheries on seamounts: a meta‐analysis of seamount data. In: Shotton R, editor. Deep sea 2003: Conference on the governance and management of deep-sea fisheries. Italy: Food and Agriculture Organization of the United Nations; p. 90–93.
  • Craig MT, Eble JA, Bowen BW, Robertson DR. 2007. High genetic connectivity across the Indian and Pacific Oceans in the reef fish Myripristis berndti (Holocentridae). Mar Ecol Prog Ser. 334:245–254.
  • Donaldson KA, Wilson RR. 1999. Amphi-panamic geminates of snook (Percoidei: Centropomidae) provide a calibration of the divergence rate in the mitochondrial DNA control region of fishes. Mol Phylogenet Evol. 13:208–213.
  • Fadeev N. 2005. Guide to biology and fisheries of fishes of the North Pacific Ocean. TINRO-Center, Vladivostok, Russia; p. 1–366. [Russian].
  • Friess C, Sedberry G. 2011. Genetic evidence for a single stock of the deep-sea teleost Beryx decadactylus in the North Atlantic Ocean as inferred from mtDNA control region analysis. J Fish Biol. 78:466–478.
  • Froese R, Pauly D. 2017. FishBase. World Wide Web electronic publication. Available from: www.fishbase.org
  • Gaither MR, Jones SA, Kelley C, Newman SJ, Sorenson L, Bowen BW. 2011. High connectivity in the deepwater snapper Pristipomoides filamentosus (Lutjanidae) across the Indo-Pacific with isolation of the Hawaiian Archipelago. PLoS One. 6:e28913.
  • García-Rodríguez FJ, García-Gasca SA, De La Cruz-Agüero J, Cota-Gómez VM. 2011. A study of the population structure of the Pacific sardine Sardinops sagax (Jenyns, 1842) in Mexico based on morphometric and genetic analyses. Fish Res. 107:169–176.
  • Grant W, Bowen B. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J Hered. 89:415–426.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser. 41:95–98.
  • Hardy GS. 1983. A revision of the fishes of the family Pentacerotidae (Perciformes). N Z J Zool. 10:177–220.
  • Hart PJ, Pearson E. 2011. An application of the theory of island biogeography to fish speciation on seamounts. Mar Ecol Prog Ser. 430:281–288.
  • Horne JB, van Herwerden L, Choat JH, Robertson D. 2008. High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Mol Phylogenet Evol. 49:629–638.
  • Humphreys RL Jr. 2000. Otolith-based assessment of recruitment variation in a North pacific seamount population of armorhead Pseudopentaceros wheeleri. Mar Ecol Prog Ser. 204:213–223.
  • Humphreys RL Jr, Tagami D. 1986. Review and current status of research on the biology and ecology of the genus Pseudopentaceros. In: Environment and Resources of Seamounts in the North Pacific. NOAA Tech Report NMFS, Vol. 43; p. 55–62.
  • Humphreys RL Jr, Winans GA, Tagami DT. 1989. Synonymy and life history of the North Pacific pelagic armorhead, Pseudopentaceros wheeleri Hardy (Pisces: Pentacerotidae). Copeia. 1989:142–153.
  • Ishikawa S, Aoyama J, Tsukamoto K, Nishida M. 2001. Population structure of the Japanese eel Anguilla japonica as examined by mitochondrial DNA sequencing. *Fisheries Sci. 67:246–253.
  • Kennington WJ, Keron PW, Harvey ES, Wakefield CB, Williams AJ, Halafihi T, Newman SJ. 2017. High intra-ocean, but limited inter-ocean genetic connectivity in populations of the deep-water oblique-banded snapper Pristipomoides zonatus (Pisces: Lutjanidae). Fish Res. 193:242–249.
  • Kim S. 2012. Phylogenetic systematics of the family Pentacerotidae (Actinopterygii: Order Perciformes). Zootaxa. 3366:1–111.
  • Kim JK, Park JY, Kim YS. 2006. Genetic diversity, relationship and demographic history of three geographic populations of Ammodytes personatus (Ammodytidae) from Korea inferred from mitochondrial DNA control region and 16S rRNA. Korean J Genet. 28:343–351.
  • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16:111–120.
  • Kiyota M, Nishida K, Murakami C, Yonezaki S. 2016. History, biology, and conservation of pacific endemics 2. The North Pacific Armorhead, Pentaceros wheeleri (Hardy, 1983) (Perciformes, Pentacerotidae) 1. Pac Sci. 70:1–20.
  • Klanten OS, Choat JH, van Herwerden L. 2007. Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Mar Biol. 150:659–670.
  • Lundy CJ, Rico C, Hewitt GM. 2000. Temporal and spatial genetic variation in spawning grounds of European hake (Merluccius merluccius) in the Bay of Biscay. Mol Ecol. 9:2067–2079.
  • Martin AP, Humphreys R, Palumbi SR. 1992. Population genetic structure of the armorhead, Pseudopentaceros wheeleri, in the North Pacific Ocean: application of the polymerase chain reaction to fisheries problems. Can J Fish Aquat Sci. 49:2386–2391.
  • Martínez P, González EG, Castilho R, Zardoya R. 2006. Genetic diversity and historical demography of Atlantic bigeye tuna (Thunnus obesus). Mol Phylogenet Evol. 39:404–416.
  • Morato T, Clark MR. 2007. Seamounts: ecology, fisheries, and conservation. In: Seamount fishes: ecology and life histories. Oxford (UK): Blackwell Publishing; p. 170–188 (Chapter 9).
  • Murakami C, Yonezaki S, Suyama S, Nakagami M, Okuda T, Kiyota M. 2016. Early epipelagic life-history characteristics of the North Pacific armorhead Pentaceros wheeleri. Fisheries Sci. 82:709–718.
  • Myoung SH, Kim JK. 2014. Genetic diversity and population structure of the gizzard shad Konosirus punctatus in Korean waters based on mitochondrial DNA control region sequences. Genes Genomics. 36:591–598.
  • Planes S, Lenfant P. 2002. Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus, induced by a large variance in individual reproductive success. Mol Ecol. 11:1515–1524.
  • Rambaut A. 2012. FigTree version 1.4. 0. Available from: tree.bio.ed.ac.uk/software/figtree.
  • Rasmussen HB. 2012. Restriction fragment length polymorphism analysis of PCR-amplified fragments (PCR-RFLP) and gel electrophoresis-valuable tool for genotyping and genetic fingerprinting. In: Magdeldin S, editors. Gel electrophoresis-principles and basics. Hong Kong: InTech; p. 315–334.
  • Rasmussen TL, Thomsen E, Troelstra SR, Kuijpers A, Prins MA. 2003. Millennial-scale glacial variability versus Holocene stability: changes in planktic and benthic foraminifera faunas and ocean circulation in the North Atlantic during the last 60000 years. Mar Micropaleontol. 47:143–176.
  • Rogers AD. 1994. The biology of seamounts. Adv Mar Biol. 30:305–350.
  • Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol. 9:552–569.
  • Samadi S, Bottan L, Macpherson E, De Forges BR, Boisselier M. 2006. Seamount endemism questioned by the geographic distribution and population genetic structure of marine invertebrates. Mar Biol. 149:1463–1475.
  • Sasaki T. 1986. Development and present status of Japanese trawl fisheries in the vicinity of seamounts. In: Uchida RN, Hayasi S, Boehlert GW, editors. Environment and resources of seamounts in the North Pacific. NOAA Tech Report NMFS 43; p. 21–30.
  • Seki MP, Somerton DA. 1994. Feeding ecology and daily ration of the pelagic armorhead, Pseudopentaceros wheeleri, at Southeast Hancock Seamount. Environ Biol Fishes. 39:73–84.
  • Somerton DA, Kikkawa BS. 1992. Population dynamics of pelagic armorhead Pseudopentaceros wheeleri on Southeast Hancock Seamount. Fish Bull. 90:756–769.
  • Stefanni S, Knutsen H. 2007. Phylogeography and demographic history of the deep-sea fish Aphanopus carbo (Lowe, 1839) in the NE Atlantic: Vicariance followed by secondary contact or speciation? Mol Phylogenet Evol. 42:38–46.
  • Stepien C. 1999. Phylogeographical structure of the Dover sole Microstomus pacificus: the larval retention hypothesis and genetic divergence along the deep continental slope of the northeastern Pacific Ocean. Mol Ecol. 8:923–939.
  • Szabó Z, Snelgrove B, Craig MT, Rocha LA, Bowen BW. 2014. Phylogeography of the manybar goatfish, Parupeneus multifasciatus, reveals isolation of the Hawaiian Archipelago and a cryptic species in the Marquesas Islands. Bull Mar Sci. 90:493–512.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acid Res. 22:4673–4680.
  • Varela Nayar AI. 2013. Population Genetics of the Teleost Orange Roughy, Hoplostethus atlanticus, and Insights into their Visual Adaptations to the Deep-Sea Environment [dissertation]. Wellington: Victoria University of Wellington.
  • Waldman JR. 2005. Definition of stocks. In: Cadrin SX, Friedland KD, Waldman JR, editors. Stock identification methods. Cambridge (MA): Academic Press; p. 7–16.
  • Wetherall JA, Yong MY. 1986. Problems in assessing the pelagic armorhead stock on the central North Pacific seamounts. US Dep Comm; Nat Mar Fish Serv Tech Rep. 43; p. 73–85.
  • White TA, Stefanni S, Stamford J, Hoelzel A. 2009. Unexpected panmixia in a long-lived, deep-sea fish with well‐defined spawning habitat and relatively low fecundity. Mol Ecol. 18:2563–2573.
  • Wilson AT. 1964. Origin of ice ages: an ice shelf theory for Pleistocene glaciation. Nature. 201:147–149.
  • Yanagimoto T, Humphreys RL. 2005. Maturation and reproductive cycle of female armorhead Pseudopentaceros wheeleri from the southern Emperor–northern Hawaiian Ridge Seamounts. Fisheries Sci. 71:1059–1068.
  • Yanagimoto T, Kitamura T, Kobayashi T. 2008. Population structure of the pelagic armorhead, Pseudopentaceros wheeleri, inferred from PCR-RFLP analysis of mtDNA variation. *Nippon Suisan Gakk. 74:412–420. [Japanese].
  • Zhu D, Jamieson BG, Hugall A, Moritz C. 1994. Sequence evolution and phylogenetic signal in control-region and cytochrome b sequences of rainbow fishes (Melanotaeniidae). Mol Biol Evol. 11:672–683.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.