DNA bar coding of Aplousobranchiata and Phlebobranchiata Ascidians (Phylum:Chordata) inferred from mitochondrial cytochrome oxidase subunit I (COI) gene sequence approach in Andaman and Nicobar Islands, India: a first report

References

• Ananthan G, Murugan R. 2016. Molecular phylogeny of four ascidian species inferred from mitochondrial cytochrome oxidase subunit I (COI) sequence. Mitochondr DNA Part A. 29(1):121–125.
   PubMed Web of Science ®Google Scholar
• Ananthan G, Stalin C, Raghunathan C. 2015. A new record of ascidians in Indian waters, from the Great Nicobar Biosphere Reserve, Andaman and Nicobar Islands. Mari Biodiv Rec. 8(116):1–5.
   Google Scholar
• Caputi L, Andreakis N, Mastrototaro F, Cirino P, Vassillo M, Sordino P. 2007. Cryptic speciation in a model invertebrate chordate. Proc Natl Acad Sci USA. 104(22):9364–9369.
   PubMed Web of Science ®Google Scholar
• Cohen AN. 2005. Guide to exotic species of San Francisco Bay. Oakland, CA: San Francisco Estuary Institute.
   Google Scholar
• Delsuc F, Brinkmann H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nat. 439(7079):965–968.
   Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mari Biol Biotechnol. 3(5):294–299.
   PubMedGoogle Scholar
• Geller JB, Darling JA, Carlton JT. 2010. Genetic perspectives on marine biological invasions. Ann Rev Mar Sci. 2:367–393.
   PubMed Web of Science ®Google Scholar
• Gemmel NJ, Akiyama S. 1996. A simple and efficient method for the extraction of DNA. Annu Rev Mar Sci. 2:367–393.
   Google Scholar
• Gittenberger A. 2007. Recent population expansions of non-native ascidians in the Netherlands. J Exp Mar Biol Ecol. 342(1):122–126.
   Web of Science ®Google Scholar
• Goodbody I. 2003. The ascidian fauna of Port Royal, Jamaica. I. Harbor and mangrove dwelling species. Bull Mar Sci. 73:457–476.
   Web of Science ®Google Scholar
• Iyappan K, Ananthan G, Sathishkumar R. 2015. Molecular identification of ascidians from the Palk Bay Region, Southeast coast of India. Mitochondr DNA. 27(5):3573–3576.
   PubMed Web of Science ®Google Scholar
• Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16(2):111–120.
   PubMed Web of Science ®Google Scholar
• Kott P. 1985. The Australian Ascidiacea Pt 1, Phlebobranchia and Stolidobranchia. Mem Queensl Mus. 23:1–440.
   Google Scholar
• Kott P. 1990. The Australian Ascidiacea. Part 2, Aplousobranchia (1). Mem Queensl Mus. 29:1–266.
   Google Scholar
• Kott P. 2005. Pynoclavella (Tunicata: Ascidiacea) species from the West Indian Ocean. Afr Zool. 40(2):205–212.
   Web of Science ®Google Scholar
• Lahille MF. 1886. Sur la classification des Tuniciers. CR Acad Sci Paris. 102:1573–1575.
   Google Scholar
• Lahille MF. 1887. E tude systematique des Tuniciers. CR Assoc Fr Adv Sci. 16:667–677.
   Google Scholar
• Lahille MF. 1890. Recherches sur les Tuniciers. Ph.D. thesis, Fac. Sciences Paris. Toulouse.
   Google Scholar
• Lambert CC, Lambert G. 1998. Non-indigenous ascidians in southern California harbors and marinas. Mar Biol. 130(4):675–688.
   Web of Science ®Google Scholar
• Lambert CC, Lambert G. 2003. Persistence and differential distribution of non indigenous ascidians in harbors of the Southern California Bight. Mar Ecol Prog Ser. 259:145–161.
   Web of Science ®Google Scholar
• Meenakshi VK, Renganathan TK, Sentharamarai S, Jeyalakshmi J. 2003. Marine Biodiversity- Taxonomy of Indian Ascidians. MOENF Technical Report.
   Google Scholar
• Michaelsen W. 1920. Die Ascidiae Krikobranchiae des westlichen Indischen Ozeans. Didemniden. Jahrbuch Der Hamburgischen Wissenschaftlichen Anstalten. 37:1–76.
   Google Scholar
• Monniot C. 1983. Ascidies littorales de Guadeloupe. IV - Styelidae. Bulletin du Museum National D'Histoire Naturelle. 5(2):423–456.
   Google Scholar
• Monniot F, Monniot C. 1996. New collections of ascidians from the western Pacific and Southeastern Asia. Micronesica. 29(2):133–279.
   Google Scholar
• Monniot C, Monniot F, Laboute P. 1991. Coral Reef Ascidians of New Caledonia. Paris: Orstom.
   Google Scholar
• Moritz C, Dowling TE, Brown WM. 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu Rev Ecol Syst. 18(1):269–292.
   Google Scholar
• Murugan R, Ananthan G, Arunkumar A. 2017. Aplousobranchia ascidians in Andaman and Nicobar Islands: a combined morphological and molecular discrimination. Mitochondr DNA. 29(5):879–884.
   PubMedGoogle Scholar
• Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York: Oxford University Press.
   Google Scholar
• Nydam ML, Harrison RG. 2007. Genealogical relationships within and among shallow-water Ciona species (Ascidiacea). Mar Biol. 151(5):1839–1847.
   Web of Science ®Google Scholar
• Nydam ML, Harrison RG. 2010. Polymorphism and divergence within the ascidian genus Ciona. Mol Phylogenet Evol. 56(2):718–726.
   PubMed Web of Science ®Google Scholar
• Rowe RM. 1966. Ascidians (Urochordata: Ascidiacea) from Arraial do Cabo, Rio de Janeiro, Brazil. Iheringia Ser Zool Porto Alegre. 95(1):57–64.
   Google Scholar
• Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4(4):406–425.
   PubMed Web of Science ®Google Scholar
• Selva PA, Ananthan G, Balasubramanian T. 2012. First record of mitochondrial cytochrome oxidase 1 gene sequences of ascidian Polyclinum madrasensis (Sebestian, 1952) from Gulf of Mannar, Southeast coast of India. Glob Adv Res J Biotechnol. 2:12–16.
   Google Scholar
• Smith KF, Cahill PL, Fidler AE. 2010. First record of the solitary ascidian Ciona savignyi Herdman, 1882 in the Southern Hemisphere. AI. 5(4):363–368.
   Google Scholar
• Sri Kumaran N, Bragadeeswaran S, Meenakshi VK. 2014. Mitochondrial cytochrome oxidase I (COI) DNA sequencing of the ascidians Didemnum granulatum (JQ013198) and D. psammathodes (JN624758). Mitochondr DNA. 25(2):131–134.
   PubMed Web of Science ®Google Scholar
• Stach T, Turbeville JM. 2002. Phylogeny of Tunicata inferred from molecular and morphological characters. Mol Phylogenet Evol. 25(3):408–428.
   PubMed Web of Science ®Google Scholar
• Stefaniak L, Zhang H, Gittenberger A, Smith KF, Holsinger K, Lin S, Whitlatch RB. 2012. Determining the native region of the putatively invasive ascidian Didemnum vexillum. J Exp Mar Biol Ecol. 422-423:64–71.
   Web of Science ®Google Scholar
• Suzuki M, Nishikawa T, Bird A. 2005. Genomic approaches reveal unexpected genetic divergence within Ciona intestinalis. J Mol Evol. 61(5):627–635.
   PubMed Web of Science ®Google Scholar
• Swalla BJ, Cameron CB, Corley LS, Garey JR. 2000. Urochordates are monophyletic within the deuterostomes. Syst Biol. 49(1):52–64.
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.06. Mol Biol Evol. 30(12):2725–2729.
   PubMed Web of Science ®Google Scholar
• Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22):4673–4680.
   PubMed Web of Science ®Google Scholar
• Turon X, Lopez-Legentil S. 2004. Ascidian molecular phylogeny inferred from mtDNA data with emphasis on the Aplousobranchiata. Mol Phylogenet Evol. 33(2):309–320.
   PubMed Web of Science ®Google Scholar
• Valentine PC. 2003. USGS National Geologic Studies of Benthic Habitats, Marine Nuisance Species, Genus Didemnum: U.S. Geological Survey data available on the Web. [accessed 2006 Mar 6]. http://woodshole.er.usgs.gov/projectpages/stellwagen/Didemnum/index.htm.
   Google Scholar
• Venkataraman K, Satyanarayan C, Alfred JRB, Wolstenholme J. 2003. Handbook on hard coral of India. Kolkata: Zoological Survey of India.
   Google Scholar
• Wada H. 1998. Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny. Mol Biol Evol. 15(9):1189–1194.
   PubMed Web of Science ®Google Scholar
• Wada H, Makabe KW, Nakauchi M, Satoh N. 1992. Phylogenetic relationships between solitary and colonial ascidians, as inferred from the sequence of the central region of their respective 18S rDNAs. Biol Bull. 183(3):445–448.
   Web of Science ®Google Scholar
• Winchell CJ, Sullivan J, Cameron CB, Swalla BJ, Mallatt J. 2002. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Mol Biol Evol. 19(5):762–776.
   PubMed Web of Science ®Google Scholar
• Zhan A, MacIsaac HJ, Cristescu ME. 2010. Invasion genetics of the Ciona intestinalis species complex: from regional endemism to global homogeneity. Mol Ecol. 19(21):4678–4694.
   PubMed Web of Science ®Google Scholar
• Zeng L, Jacobs M, Swalla B. 2006. Coloniality has evolved once in Stolidobranch Ascidians. Integr Comp Biol. 46(3):255–268.
   PubMed Web of Science ®Google Scholar
• Zeng L, Swalla B. 2005. Molecular phylogeny of the protochordates: chordate evolution. Can J Zool. 83(1):24–33.
   Google Scholar