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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 32, 2021 - Issue 3
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Research Articles

Cryptic species diversity and molecular diagnosis of Channa orientalis; an endemic freshwater fish of Sri Lanka

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Pages 77-84 | Received 14 Aug 2020, Accepted 10 Jan 2021, Published online: 27 Jan 2021

References

  • Aranishi F. (2005). Rapid PCR-RFLP method for discrimination of imported and domestic mackerel. Marine Biotechnology 7(6):571–5.
  • Bandelt H, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16(1):37–48.
  • Bingpeng X, Heshan L, Zhang Z, Chunguang W, Yanguo W, Jianjun W. 2018. DNA barcoding for identification of fish species in the taiwan strait. PLoS One. 13(6):e0198109.
  • Conte-Grand C, Britz R, Dahanukar N, Raghavan R, Pethiyagoda R, Tan HH, Hadiaty RK, Yaakob NS, Rüber L. 2017. Barcoding snakeheads (Teleostei, Channidae) revisited: discovering greater species diversity and resolving perpetuated taxonomic confusions. PLoS One. 12(9):e0184017.
  • De Silva M, Hapurachchi N, Jayaratne T. 2015. Sri Lankan freshwater fishes. Galle (Sri Lanka): Wildlife Conservation Society; p. 391.
  • Deraniyagala PEP. 1952. A colored atlas of some vertebrates from Ceylon, Vol. 1, Fishes. Colombo (Sri Lanka): Ceylon Natural Museum Publications; p. 149.
  • Goonatilake SdA, Fernando M, Kotagama O, Perera N, Vidanage S, Weerakoon D, Adam A, Maiz-Tome L. 2020. The National Red List of Sri Lanka: assessment of the threat status of the freshwater fishes of Sri Lanka. Colombo (Sri Lanka): IUCN International Union for Conservation of Nature and Natural Resources and the Biodiversity Secretariat of the Ministry of Environment and Wildlife Resources; p. 106.
  • Guan, F., Yu-Ting Jin, Jin Zhao, Ai-Chun Xu, Yuan-Yuan Luo (2018) A PCR Method That Can Be Further Developed into PCR-RFLP Assay for Eight Animal Species Identification. Journal of Analytical Methods in Chemistry. 2018; 2018: 5890140.DOI: 10.1155/2018/5890140.
  • Jayaram KC. 1999. The freshwater fishes of Indian region. Delhi (India): Narendra Publishing House; p. 551.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29(6):1695–1701.
  • Leigh JW, Bryant D. 2015. PopART: full-feature software for haplotype network construction. Methods Ecol Evol. 6(9):1110–1116.
  • Lozano-Duque, Y., M.L Richlen, T.B Smith, D.M Anderson, D.L. Erdner (2018) Development and Validation of PCR-RFLP Assay for Identification of Gambierdiscus species in the Greater Caribbean region. Journal of Applied Phycology 30(6):3529–3540.
  • Perera WPN, Perera SJ, Walpita CN, Kodithuwakku S, Perera LV, Gunawardane A. 2020. Snakeheads of Sri Lanka: a taxonomic and biogeographic review. J Agric Sciences. 15(3):411–425.
  • Pethiyagoda R. 1991. Freshwater fishes of Sri Lanka. Colombo (Sri Lanka): Wildlife Heritage Trust of Sri Lanka; p. 362.
  • Rambaut A, Drummond A, Xie D, Baele G, Suchard M. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst Biol. 67(5):901–907.
  • Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19(12):1572–1574.
  • Rüber L, Tan HH, Britz R. 2020. Snakehead (Teleostei: Channidae) diversity and the Eastern Himalaya biodiversity hotspot. J Zool Syst Evol Res. 58(1):356–386.
  • Sankari, S.L, K. Mahalakshmi, V. N. Kumar. (2019). A comparative study of Candida species diversity among patients with oral squamous cell carcinoma and oral potentially malignant disorders. BMC Res Notes 13(1):488. DOI: 10.1186/s13104-020-05336-3
  • Sharma NK, Mir JI, Singh R, Akhtar MS, Pandey NN. 2015. Length–weight relationships for eight fish species from the Ravi River, north-western India. J Appl Ichthyol. 31(6):1146–1147.
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22(21):2688–2690.
  • Sudasinghe H, Adamson EAS, Ranasinghe RHT, Meegaskumbura M, Ikebe C, Britz R. 2020. Unexpected species diversity within Sri Lanka’s snakehead fishes of the Channa marulius group (Teleostei: Channidae). Zootaxa. 4747(1):132.
  • Sudasinghe H, Pethiyagoda R, Meegaskumbura M. 2020a. A molecular phylogeny of the genus Laubuka (Teleostei: Cyprinidae) in Sri Lanka reveals multiple origins and a cryptic species. Syst Biodivers. 18(6):592–613.
  • Sudasinghe H, Pethiyagoda R, Meegaskumbura M. 2020b. Evolution of Sri Lanka’s giant danios (Teleostei: Cyprinidae: Devario): teasing apart species in a recent diversification. Mol Phylogenet Evol. 149:106853.
  • Sudasinghe H, Pethiyagoda R, Meegaskumbura M, Maduwage K, Britz R. 2020. Channa kelaartii, a valid species of dwarf snakehead from Sri Lanka and southern peninsular India (Teleostei: Channidae). Vertebrate Zoology. 70:157–170.
  • Sudasinghe H, Pethiyagoda R, Ranasinghe RHT, Raghavan R, Dahanukar N, Meegaskumbura M. 2020. A molecular phylogeny of the freshwater-fish genus Rasbora (Teleostei: Cyprinidae) in Sri Lanka reveals a remarkable diversification—and a cryptic species. J Zool Syst Evol Res. 58(4):1076–1110.
  • Sudasinghe H, Ranasinghe RHT, Pethiyagoda R, Meegaskumbura M, Britz R. 2021. Genetic diversity and morphological stasis in the Ceylon Snakehead, Channa orientalis (Teleostei: Channidae). Ichthyol Res. 68: 67–80
  • Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN. 2005. DNA barcoding Australia’s fish species. Phil Trans R Soc B. 360(1462):1847–1857.
  • Wijesinghe LCA, de S, Gunatilleke IAUN, Jayawardana SDG, Kotagama SW, Gunatilleke CVS. 1993. Biological conservation in Sri Lanka. A National Status Report. Colombo (Sri Lanka): IUCN.

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