Whelks, rock-snails, and allied: a new phylogenetic framework for the family Muricidae (Mollusca: Gastropoda)

References

• Barco A, Claremont M, Reid DG, Houart R, Bouchet P, Williams ST, Cruaud C, Couloux A, Oliverio M. 2010. A molecular phylogenetic framework for the Muricidae, a diverse family of carnivorous gastropods. Molecular Phylogenetics and Evolution 56(3):1025–1039. DOI: 10.1016/j.ympev.2010.03.008.
   PubMed Web of Science ®Google Scholar
• Barco A, Herbert G, Houart R, Fassio G, Oliverio M. 2016. A molecular phylogenetic framework for the subfamily Ocenebrinae (Gastropoda, Muricidae). Zoologica Scripta 46(3):322–335. DOI: 10.1111/zsc.12219.
   Web of Science ®Google Scholar
• Barco A, Marshall B, Houart R, Oliverio M. 2015. Molecular phylogenetics of Haustrinae and Pagodulinae (Neogastropoda: Muricidae) with a focus on New Zealand species. Journal of Molluscan Studies 81(4):476–488. DOI: 10.1093/mollus/eyv020.
   Google Scholar
• Barco A, Schiaparelli S, Houart R, Oliverio M. 2012. Cenozoic evolution of Muricidae (Mollusca, Neogastropoda) in the Southern Ocean, with the description of a new subfamily. Zoologica Scripta 41(6):596–616. DOI: 10.1111/j.1463-6409.2012.00554.x.
   Web of Science ®Google Scholar
• Benkendorff K, Rudd D, Nongmaithem BD, Liu L, Young F, Edwards V, Avila C, Abbott CA. 2015. Are the traditional medical uses of Muricidae molluscs substantiated by their pharmacological properties and bioactive compounds? Marine Drugs 13(8):5237–5275. DOI: 10.3390/md13085237.
   PubMed Web of Science ®Google Scholar
• Bompiani E, Petrillo UF, Lasinio GJ, Palini F 2020. High-performance computing with terastat. 2020 IEEE Intl Conf on Dependable, Autonomic and Secure Computing, Intl Conf on Pervasive Intelligence and Computing, Intl Conf on Cloud and Big Data Computing, Intl Conf on Cyber Science and Technology Congress (DASC/PiCom/CBDCom/CyberSciTech) IEEE, Calgary, Alberta, Canada. pp. 499–506.
   Google Scholar
• Bouchet P, Rocroi JP. 2005. Classification and nomenclator of gastropod families. Malacologia 47:1–397.
   Web of Science ®Google Scholar
• Buhle ER, Ruesink JL. 2009. Impacts of invasive oyster drills on Olympia oyster (Ostrea lurida Carpenter 1864) recovery in Willapa Bay, Washington, United States. Journal of Shellfish Research 28(1):87–96. DOI: 10.2983/035.028.0115.
   Web of Science ®Google Scholar
• Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17(4):540–552. DOI: 10.1093/oxfordjournals.molbev.a026334.
   PubMed Web of Science ®Google Scholar
• Claremont M, Houart R, Williams ST, Reid DG. 2013. A molecular phylogenetic framework for the Ergalataxinae (Neogastropoda: Muricidae). Journal of Molluscan Studies 79(1):19–29. DOI: 10.1093/mollus/eys028.
   Google Scholar
• Claremont M, Reid DG, Williams ST. 2008. A molecular phylogeny of the Rapaninae and Ergalataxinae (Neogastropoda: Muricidae). Journal of Molluscan Studies 74(3):215–221. DOI: 10.1093/mollus/eyn005.
   Google Scholar
• Collins TM, Frazer K, Palmer AR, Vermeij GJ, Brown WM. 1996. Evolutionary history of Northern Hemisphere Nucella (Gastropoda, Muricidae): Molecular, morphological, ecological, and paleontological evidence. Evolution 50(6):2287–2304. DOI: 10.2307/2410698.
   PubMed Web of Science ®Google Scholar
• Cossmann M. 1903. Essais de Paleoconchologie Comparée. Paris: The Author & F.R de Rudeval.
   Google Scholar
• Davison A. 2006. The ovotestis: An underdeveloped organ of evolution. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology 28(6):642–650. DOI: 10.1002/bies.20424.
   PubMed Web of Science ®Google Scholar
• Douglas PMJ, Affek HP, Ivany LC, Houben AJP, Sijp WP, Sluijs A, Schouten S, Pagani M. 2014. Pronounced zonal heterogeneity in Eocene southern high-latitude sea surface temperatures. Proceedings of the National Academy of Sciences 111:6582–6587. DOI: 10.1073/pnas.1321441111.
   PubMed Web of Science ®Google Scholar
• Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29(8):1969–1973. DOI: 10.1093/molbev/mss075.
   PubMed Web of Science ®Google Scholar
• Fassio G, Russo P, Bonomolo G, Fedosov AE, Modica MV, Nocella E, Oliverio M. 2022. A molecular framework for the systematics of the Mediterranean spindle-shells (Gastropoda, Neogastropoda, Fasciolariidae, Fusininae). Mediterranean Marine Science 23(3):623–636. DOI: 10.12681/mms.29935.
   Web of Science ®Google Scholar
• Fassio G, Stefani M, Russini V, Buge B, Bouchet P, Treneman N, Malaquias MAE, Schiaparelli S, Modica MV, Oliverio M. 2022. Neither slugs nor snails: A molecular reappraisal of the gastropod family Velutinidae. Zoological Journal of the Linnean Society 197(4):924–964. DOI: 10.1093/zoolinnean/zlac091.
   Web of Science ®Google Scholar
• Griffin M, Pastorino G. 2005. The genus Trophon Monfort, 1810 (Gastropoda: Muricidae) in the tertiary of Patagonia. Journal of Paleontology 79(2):296–311. DOI: 10.1666/0022-3360(2005)079<0296:TGTMGM>2.0.CO;2.
   Web of Science ®Google Scholar
• Harasewych MG, Sei M. 2022. The complete mitochondrial genome of Coralliophila richardi (P. Fischer, 1882)(Neogastropoda: Muricidae: Coralliophilinae). The Nautilus 136:1–11.
   Web of Science ®Google Scholar
• Herbert GS, Merle D, Gallardo CS. 2007. A developmental perspective on evolutionary innovation in the radula of the predatory neogastropod family Muricidae. American Malacological Bulletin 23(1):17–32. DOI: 10.4003/0740-2783-23.1.17.
   Web of Science ®Google Scholar
• Hoang DT, Chernomor O, Von Haeseler A, Minh BQ, Vinh LS. 2017. UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35:518–522. DOI: 10.1093/molbev/msx281.
   Web of Science ®Google Scholar
• Houart R. 2018. Historique et classification des espèces actuelles de Muricidae (Neogastropoda, Muricoidea). Novapex 19(2):37–66.
   Google Scholar
• Katoh K, Rozewicki J, Yamada KD. 2019. MAFFT online service: Multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4):1160–1166. DOI: 10.1093/bib/bbx108.
   PubMed Web of Science ®Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. 2012. Geneious basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12):1647–1649. DOI: 10.1093/bioinformatics/bts199.
   PubMed Web of Science ®Google Scholar
• Keen AM. 1971. A review of the Muricacea. The Echo 4:35–36.
   Google Scholar
• Kuraku S, Zmasek CM, Nishimura O, Katoh K. 2013. aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic Acids Research 41:22–28. DOI: 10.1093/nar/gkt389.
   PubMed Web of Science ®Google Scholar
• Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2016. PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34:772–773. DOI: 10.1093/molbev/msw260.
   Web of Science ®Google Scholar
• Merle D, Garrigues B, Pointier JP. 2011. Fossil and recent Muricidae of the world. Part Muricinae. Harxheim: ConchBooks.
   Google Scholar
• Merle D, Garrigues B, Pointier JP. 2022. Fossil and recent Muricidae of the world: Part Muricopsinae. Harxheim: ConchBooks.
   Google Scholar
• Miller MA, Pfeiffer W, Schwartz T 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans. pp. 1–8.
   Google Scholar
• MolluscaBase eds. 2023. MolluscaBase. Muricidae Rafinesque, 1815. Accessed through: World Register of Marine Species at: https://www.marinespecies.org/aphia.php?p=taxdetails&id=148.
   Google Scholar
• Montes M, Beamud E, Nozal F, Santillana S. 2019. Late Maastrichtian-Paleocene chronostratigraphy from Seymour (Marambio) island (James Ross Basin, Antarctic Peninsula). Eustatic controls of sedimentation. Advances in Polar Science 30(3):303–327. DOI: 10.13679/j.advps.2019.2.00.
   Google Scholar
• Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2014. IQ-TREE: A fast and effective stochastic algorithm for estimating Maximum-Likelihood Phylogenies. Molecular Biology and Evolution 32:268–274. DOI: 10.1093/molbev/msu300.
   PubMed Web of Science ®Google Scholar
• Oliverio M, Mariottini P. 2001. A molecular framework for the phylogeny of Coralliophila and related muricoids. Journal of Molluscan Studies 67:215–224. DOI: 10.1093/mollus/67.2.215.
   Web of Science ®Google Scholar
• Oliverio M, Modica MV. 2010. Relationships of the haematophagous marine snail Colubraria (Rachiglossa: Colubrariidae), within the neogastropod phylogenetic framework. Zoological Journal of the Linnean Society 158(4):779–800. DOI: 10.1111/j.1096-3642.2009.00568.x.
   Web of Science ®Google Scholar
• Pio MJ, Herbert GS, Pastorino G. 2014. Developmental origins of complex radular characters in the Muricidae: The bifid rachidian edge. Invertebrate Biology 133(1):64–73. DOI: 10.1111/ivb.12040.
   Web of Science ®Google Scholar
• Ponder W, Vokes E. 1988. A revision of the indo-west pacific fossil and recent species of Murex ss and Haustellum (Mollusca: Gastropoda: Muricidae). Records of the Australian Museum Supplement 8:1–157. DOI: 10.3853/j.0812-7387.8.1988.96.
   Google Scholar
• Ponder WF, Warén A. 1988. Classification of the Caenogastropoda and Heterostropha – a list of the family-group names and higher taxa. Malacological Review 4:288–326.
   Google Scholar
• Radwin GE, D’Attilio A. 1971. Muricacean supraspecific taxonomy based on the shell and radula. The Echo 4:55–67.
   Google Scholar
• Rambaut A. 2018. FigTree, a graphical viewer of phylogenetic trees (version 1.4. 4). Edinburgh: Institute of evolutionary biology, University of Edinburgh.
   Google Scholar
• R Core Team. 2022. R: A language and environment for statistical computing. Vienna: R Foundation for Statistical Computing. Available: https://www.R-project.org/.
   Google Scholar
• Richter A, Luque ÁA. 2002. Current knowledge on Coralliophilidae (Gastropoda) and phylogenetic implication of anatomical and reproductive characters. Bollettino Malacologico 38(4):5–18.
   Google Scholar
• Richter A, Luque ÁA. 2003. Reproductive anatomy of three Mediterranean species of Coralliophilidae (Mollusca: Gastropoda: Neogastropoda). Journal of the Marine Biological Association of the United Kingdom 83(5):1029–1045. DOI: 10.1017/S0025315403008245h.
   Web of Science ®Google Scholar
• Sysoev AV. 1992. A new hadal species of Boreotrophon (Gastropoda, Muricidae) from Northwestern Pacific. Ruthenica 2:166–167.
   Google Scholar
• Tan KS. 2003. Phylogenetic analysis and taxonomy of some southern Australian and New Zealand Muricidae (Mollusca: Neogastropoda). Journal of Natural History 37(8):911–1028. DOI: 10.1080/00222930110120610.
   Web of Science ®Google Scholar
• Thiele J. 1929. Handbuch der systematischen Weichtierkunde. Jena: Gustav Fischer.
   Google Scholar
• To TH, Jung M, Lycett S, Gascuel O. 2016. Fast dating using least-squares criteria and algorithms. Systematic Biology 65(1):82–97. DOI: 10.1093/sysbio/syv068.
   PubMed Web of Science ®Google Scholar
• Vaidya G, Lohman DJ, Meier R. 2011. SequenceMatrix: Concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27(2):171–180. DOI: 10.1111/j.1096-0031.2010.00329.x.
   PubMed Web of Science ®Google Scholar
• Vermeij GJ, Carlson SJ. 2000. The muricid gastropod subfamily Rapaninae: Phylogeny and ecological history. Paleobiology 26(1):19–46. DOI: 10.1666/0094-8373(2000)026<0019:TMGSRP>2.0.CO;2.
   Web of Science ®Google Scholar
• Vokes EH. 1996. One last look at the Muricidae. American Conchologist 24:4–6.
   Google Scholar
• Yu Y, Kong L, Li Q. 2023. Mitogenomic phylogeny of Muricidae (Gastropoda: Neogastropoda). Zoologica Scripta 52(4):413–425. DOI: 10.1111/zsc.12598.
   Web of Science ®Google Scholar