The transcriptome expression levels related to ovulation induction and acupuncture protection therapy in rats through gene microarray

Reference

• Abuzeid MI, Bolonduro O, La Chance J, Abozaid T, Urich M, Ullah K, Ali T, Ashraf M, Khan I. 2014. Cumulative live birth rate and assisted reproduction: impact of female age and transfer day. Facts Views Vis Obgyn. 6(3):145–149.
   PubMedGoogle Scholar
• Adeoye O, Olawumi J, Opeyemi A, Christiania O. 2018. Review on the role of glutathione on oxidative stress and infertility. JBRA Assist Reprod. 22(1):61–66. doi: 10.5935/1518-0557.20180003.
   PubMed Web of Science ®Google Scholar
• Akahoshi N, Handa H, Takemoto R, Kamata S, Yoshida M, Onaka T, Ishii I. 2019. Preeclampsia-Like features and partial lactation failure in mice lacking cystathionine gamma-lyase-An animal model of cystathioninuria. Int J Mol Sci. 20(14): doi:10.3390/ijms20143507.
   PubMed Web of Science ®Google Scholar
• Aranda F, Udry S, PeresWingeyer S, Amshoff LC, Bogdanova N, Wieacker P, Latino JO, Markoff A, de Larrañaga G. 2018. Maternal carriers of the ANXA5 M2 haplotype are exposed to a greater risk for placenta-mediated pregnancy complications. J Assist Reprod Genet. 35(5):921–928. doi:10.1007/s10815-018-1142-4.
   PubMed Web of Science ®Google Scholar
• Boltz MW, Sanders JN, Simonsen SE, Stanford JB. 2017. Fertility treatment, Use of in vitro fertilization, and time to live birth based on initial provider type. J Am Board Fam Med. 30(2):230–238. doi: 10.3122/jabfm.2017.02.160184.
   PubMed Web of Science ®Google Scholar
• Brown KS, Hill CC, Calero GA, Myers CR, Lee KH, Sethna JP, Cerione RA. 2004. The statistical mechanics of complex signaling networks: nerve growth factor signaling. Phys Biol. 1(3-4):184–195. doi:10.1088/1478-3967/1/3/006.
   PubMed Web of Science ®Google Scholar
• Daigle C, Mazin B, Matton DP. 2019. The solanum chacoense fertilization-related kinase 3 (ScFRK3) is involved in male and female gametophyte development. BMC Plant Biol. 19(1):202. doi: 10.1186/s12870-019-1804-0.
   PubMedGoogle Scholar
• Diergaarde B, Kurta ML. 2014. Use of fertility drugs and risk of ovarian cancer. Curr Opin Obstet Gynecol. 26(3):125–129. doi: 10.1097/GCO.0000000000000060.
   PubMed Web of Science ®Google Scholar
• Djaali W, Abdurrohim K, Helianthi DR. 2019. Management of acupuncture as adjuvant therapy for In vitro fertilization. Med Acupunct. 31(6):361–365. doi: 10.1089/acu.2019.1394.
   PubMedGoogle Scholar
• Eisen MB, Spellman PT, Brown PO, Botstein D. 1998. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A. 95(25):14863–8. doi: 10.1073/pnas.95.25.14863.
   PubMed Web of Science ®Google Scholar
• Feldman AT, Wolfe D. 2014. Tissue processing and hematoxylin and eosin staining. Methods Mol Biol. 1180:31–43. doi: 10.1007/978-1-4939-1050-2_3.
   PubMedGoogle Scholar
• Hamutoglu R, Bulut HE, Kaloglu C, Onder O, Dagdeviren T, Aydemir MN, Korkmaz EM. 2020. The regulation of trophoblast invasion and decidual reaction by matrix metalloproteinase-2, metalloproteinase-7, and metalloproteinase-9 expressions in the rat endometrium. Reprod Med Biol. 19(4):385–397. doi:10.1002/rmb2.12342.
   PubMed Web of Science ®Google Scholar
• Hierweger AM, Engler JB, Friese MA, Reichardt HM, Lydon J, DeMayo F, Mittrucker HW, Arck PC. 2019. Progesterone modulates the T-cell response via glucocorticoid receptor-dependent pathways. Am J Reprod Immunol. 81(2):e13084. doi:10.1111/aji.13084.
   PubMed Web of Science ®Google Scholar
• Homan GF, Davies M, Norman R. 2007. The impact of lifestyle factors on reproductive performance in the general population and those undergoing infertility treatment: a review. Hum Reprod Update. 13(3):209–223. doi: 10.1093/humupd/dml056.
   PubMed Web of Science ®Google Scholar
• Huang Y, Ren A, Wang L, Jin L, Lin S, Li Z, McDonald JA. 2019. Casp8 hypomethylation and neural tube defects in association with polycyclic aromatic hydrocarbon exposure. Clin Epigenetics. 11(1):72. doi:10.1186/s13148-019-0673-6.
   PubMedGoogle Scholar
• Huang Z, Du G, Huang X, Han L, Han X, Xu B, Zhang Y, Yu M, Qin Y, Xia Y, et al. 2018. The enhancer RNA lnc-SLC4A1-1 epigenetically regulates unexplained recurrent pregnancy loss (URPL) by activating CXCL8 and NF-kB pathway. EBioMedicine. 38:162–170. doi:10.1016/j.ebiom.2018.11.015.
   PubMed Web of Science ®Google Scholar
• Huang da W, Sherman BT, Lempicki RA. 2009a. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37(1):1–13. doi: 10.1093/nar/gkn923.
   PubMed Web of Science ®Google Scholar
• Huang da W, Sherman BT, Lempicki RA. 2009b. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 4(1):44–57. doi: 10.1038/nprot.2008.211.
   PubMed Web of Science ®Google Scholar
• Inhorn MC, Patrizio P. 2015. Infertility around the globe: new thinking on gender, reproductive technologies and global movements in the 21st century. Hum Reprod Update. 21(4):411–426. doi: 10.1093/humupd/dmv016.
   PubMed Web of Science ®Google Scholar
• Jeon HS, Lee SM, Jung YM, Oh S, Park JK, Lee EB, Park CW, Park JS, Han D, Jun JK. 2020. Proteomic biomarkers in mid-trimester amniotic fluid associated with adverse pregnancy outcomes in patients with systemic lupus erythematosus. PLoS One. 15(7):e0235838. doi:10.1371/journal.pone.0235838.
   PubMed Web of Science ®Google Scholar
• Jeong H, Mason SP, Barabasi AL, Oltvai ZN. 2001. Lethality and centrality in protein networks. Nature. 411(6833):41–42. doi: 10.1038/35075138.
   PubMed Web of Science ®Google Scholar
• Krikun G, Lockwood CJ, Wu XX, Zhou XD, Guller S, Calandri C, Guha A, Nemerson Y, Rand JH. 1994. The expression of the placental anticoagulant protein, annexin V, by villous trophoblasts: immunolocalization and in vitro regulation. Placenta. 15(6):601–612. doi:10.1016/s0143-4004(05)80407-2.
   PubMed Web of Science ®Google Scholar
• Kumar L, Futschik ME. 2007. Mfuzz: a software package for soft clustering of microarray data. Bioinformation. 2(1):5–7. doi: 10.6026/97320630002005.
   PubMedGoogle Scholar
• Liang CY, Cao YP, Yan Y. 2020. Blood lipid metabolic profile of overweight/obese boys aged 9-12 years. Zhongguo Dang Dai Er Ke Za Zhi. 22(8):874–881.
   PubMedGoogle Scholar
• Lindsay TJ, Vitrikas KR. 2015. Evaluation and treatment of infertility. Am Fam Physician. 91(5):308–314.
   PubMed Web of Science ®Google Scholar
• Manheimer E, Zhang G, Udoff L, Haramati A, Langenberg P, Berman BM, Bouter LM. 2008. Effects of acupuncture on rates of pregnancy and live birth among women undergoing in vitro fertilisation: systematic review and meta-analysis. Br Med J. 336(7643):545–549. doi:10.1136/bmj.39471.430451.BE.
   PubMedGoogle Scholar
• McLaren JF. 2012. Infertility evaluation. Obstet Gynecol Clin North Am. 39(4):453–463. doi: 10.1016/j.ogc.2012.09.001.
   PubMed Web of Science ®Google Scholar
• Miner SA, Robins S, Zhu YJ, Keeren K, Gu V, Read SC, Zelkowitz P. 2018. Evidence for the use of complementary and alternative medicines during fertility treatment: a scoping review. BMC Complement Altern Med. 18(1):158. doi:10.1186/s12906-018-2224-7.
   PubMedGoogle Scholar
• Mostaco-Guidolin L, Hajimohammadi S, Vasilescu DM, Hackett TL. 2017. Application of Euclidean distance mapping for assessment of basement membrane thickness distribution in asthma. J Appl Physiol (1985). 123(2):473–481. doi: 10.1152/japplphysiol.00171.2017.
   PubMed Web of Science ®Google Scholar
• Ogunbolude Y, Dai C, Bagu ET, Goel RK, Miah S, MacAusland-Berg J, Ng CY, Chibbar R, Napper S, Raptis L, et al. 2017. FRK inhibits breast cancer cell migration and invasion by suppressing epithelial-mesenchymal transition. Oncotarget. 8(68):113034–65. doi:10.18632/oncotarget.22958.
   PubMedGoogle Scholar
• Pandey S, Shetty A, Hamilton M, Bhattacharya S, Maheshwari A. 2012. Obstetric and perinatal outcomes in singleton pregnancies resulting from IVF/ICSI: a systematic review and meta-analysis. Hum Reprod Update. 18(5):485–503. doi: 10.1093/humupd/dms018.
   PubMed Web of Science ®Google Scholar
• Qiao Y, Wen J, Tang F, Martell S, Shomer N, Leung PC, Stephenson MD, Rajcan-Separovic E. 2016. Whole exome sequencing in recurrent early pregnancy loss. Mol Hum Reprod. 22(5):364–372. doi:10.1093/molehr/gaw008.
   PubMed Web of Science ®Google Scholar
• Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK. 2015. Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43(7):e47. doi:10.1093/nar/gkv007.
   PubMed Web of Science ®Google Scholar
• Rizzi A, Benagiano V, Ribatti D. 2017. Angiogenesis versus arteriogenesis. Rom J Morphol Embryol. 58(1):15–19.
   PubMed Web of Science ®Google Scholar
• Rouchou B. 2013. Consequences of infertility in developing countries. Perspect Public Health. 133(3):174–179. doi: 10.1177/1757913912472415.
   PubMed Web of Science ®Google Scholar
• Sanchez AM, Vanni VS, Bartiromo L, Papaleo E, Zilberberg E, Candiani M, Orvieto R, Vigano P. 2017. Is the oocyte quality affected by endometriosis? A review of the literature. J Ovarian Res. 10(1):43. doi:10.1186/s13048-017-0341-4.
   PubMedGoogle Scholar
• Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11):2498–2504. doi:10.1101/gr.1239303.
   PubMed Web of Science ®Google Scholar
• Stanford JB, Martin JC, Gibson M, Birdsall E, Brixner DI. 2013. Use of clomiphene citrate in the university of utah community clinics. J Reprod Med. 58(5-6):229–233.
   PubMed Web of Science ®Google Scholar
• Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, et al. 2017. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res. 45(D1):D362–D3D8. doi:10.1093/nar/gkw937.
   PubMed Web of Science ®Google Scholar
• Tilly JL, Sinclair DA. 2013. Germline energetics, aging, and female infertility. Cell Metab. 17(6):838–850. doi: 10.1016/j.cmet.2013.05.007.
   PubMed Web of Science ®Google Scholar
• Wang JX, Yang Y, Song Y, Ma LX. 2018. Positive effect of acupuncture and cupping in infertility treatment. Med Acupunct. 30(2):96–99. doi: 10.1089/acu.2017.1265.
   PubMed Web of Science ®Google Scholar
• Wang L, Cao C, Ma Q, Zeng Q, Wang H, Cheng Z, Zhu G, Qi J, MA H, Nian H, et al. 2014. RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications. BMC Plant Biol. 14:169. doi:10.1186/1471-2229-14-169.
   PubMed Web of Science ®Google Scholar
• Weeg N, Shalom-Paz E, Wiser A. 2012. Age and infertility: the clinical point of view. Minerva Ginecol. 64(6):477–483.
   PubMedGoogle Scholar
• Weiss RV, Clapauch R. 2014. Female infertility of endocrine origin. Arq Bras Endocrinol Metabol. 58(2):144–152. doi: 10.1590/0004-2730000003021.
   PubMedGoogle Scholar
• Yun L, Liqun W, Shuqi Y, Chunxiao W, Liming L, Wei Y. 2019. Acupuncture for infertile women without undergoing assisted reproductive techniques (ART): A systematic review and meta-analysis. Medicine (Baltimore). 98(29):e16463. doi: 10.1097/MD.0000000000016463.
   PubMed Web of Science ®Google Scholar
• Zhang L, Yang Y, Chai L, Bu H, Yang Y, Huang H, Ran J, Zhu Y, Li L, Chen F, et al. 2020. FRK plays an oncogenic role in non-small cell lung cancer by enhancing the stemness phenotype via induction of metabolic reprogramming. Int J Cancer. 146(1):208–222. doi:10.1002/ijc.32530.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Li P, Guo Y, Liu X, Zhang Y. 2019. MMP-9 and TIMP-1 in placenta of hypertensive disorder complicating pregnancy. Exp Ther Med. 18(1):637–641. doi: 10.3892/etm.2019.7591.
   PubMed Web of Science ®Google Scholar
• Zhong Y, Zeng F, Liu W, Ma J, Guan Y, Song Y. 2019. Acupuncture in improving endometrial receptivity: a systematic review and meta-analysis. BMC Complement Altern Med. 19(1):61. doi: 10.1186/s12906-019-2472-1.
   PubMedGoogle Scholar
• Zhu J, Arsovska B, Kozovska K. 2018. Acupuncture treatment for fertility. Open Access Maced J Med Sci. 6(9):1685–1687. doi: 10.3889/oamjms.2018.379.
   PubMedGoogle Scholar