Differentiation of Species Belonging to Saccharomyces Sensu Stricto Using a Loop-Mediated Isothermal Amplification Method

Literature Cited

• Andrews, J., and Gilliland, R. B. Super-attenuation of beer: A study of three organisms capable of causing abnormal attenuations. J. Inst. Brew. 58:189–196, 1952.
   Google Scholar
• Back, W. In: Farbatlas und Handbuch der Geränkebiologie. Verlag Hans Carl, Nürnberg, Germany. Pp. 26–29, 1994.
   Google Scholar
• Back, W. In: Farbatlas und Handbuch der Geränkebiologie. Verlag Hans Carl, Nürnberg, Germany. Pp. 10–15, 1999.
   Google Scholar
• Barnett, J. A., Payne, R. W., and Yarrow, D. In: Yeasts, Characteristics and Identification, 3rd ed. Cambridge University Press, Cambridge. Pp. 640, 642–644, 2000.
   Google Scholar
• Dandjinou, A. T., Lévesque, N., Larose, S., Lucier, J.-F., Elela, S. A., and Wellinger, R. J. A phylogenetically based secondary structure for the yeast telomerase RNA. Curr. Biol. 14:1148–1158, 2004.
   PubMed Web of Science ®Google Scholar
• De Barros Lopes, M., Soden, A., Martens, A. L., Henschke, P. A., and Langridge, P. Differentiation and species identification of yeasts using PCR. Int. J. Syst. Bacteriol. 48:279–286, 1998.
   Google Scholar
• Demain, A. L., Phaff, H. J., and Kurtzman, C. P. The industrial and agricultural significance of yeasts. In: The Yeasts, A Taxonomic Study, 4th ed. C. P. Kurtzman and J. W. Fell, eds. Elsevier Science BV, Amsterdam. Pp. 13–19, 1998.
   Google Scholar
• European Brewery Convention. In: Analytica-Microbiologica EBC, 2nd ed. Section 1.4 Yeast. EBC Microbiology Subcommittee, ed. Verlag Hans Carl, Nürnberg, Germany. Pp. 19–22, 2005.
   Google Scholar
• Fernández-Espinar, M. T., Barrio, E., and Querol, A. Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex. Yeast 20:1213–1226, 2003.
   Web of Science ®Google Scholar
• Guillamón, J. M., Barrio, E., Huerta, T., and Querol, A. Rapid characterization of four species of the Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int. J. Syst. Bacteriol. 44:708–714, 1994.
   PubMedGoogle Scholar
• Hayashi, N., Arai, R., Tada, S., Taguchi, H., and Ogawa, Y. Detection and identification of Brettanomyces/Dekkera sp. yeasts with a loop-mediated isothermal amplification method. Food Microbiol. 24:778–785, 2007.
   Web of Science ®Google Scholar
• Iwasaki, M., Yonekawa, T., Otsuka, K., Suzuki, W., Nagamine, K., Hase, T., Tatsumi, K., Horigome, T., Notomi, T., and Kanda, H. Validation of the loop-mediated isothermal amplification method for single nucleotide polymorphism genotyping with whole blood. Genome Lett. 2:119–126, 2003.
   Google Scholar
• Loureiro, V., and Malfeito-Ferreira, M. Spoilage yeasts in the wine industry. Int. J. Food Microbiol. 86:23–50, 2003.
   PubMed Web of Science ®Google Scholar
• Manzano, M., Medrala, D., Giusto, C., Bartolomeoli, I., Urso, R., and Comi, G. Classical and molecular analyses to characterize commercial dry yeasts used in wine fermentations. J. Appl. Microbiol. 100:599–607, 2006.
   Web of Science ®Google Scholar
• Martorell, P., Querol, A., and Fernández-Espinar, M. T. Rapid identification and enumeration of Saccharomyces cerevisiae cells in wine by real-time PCR. Appl. Environ. Microbiol. 71:6823–6830, 2005.
   Web of Science ®Google Scholar
• Masneuf, I., Aigleb, M., and Dubourdieua, D. Development of a polymerase chain reaction/restriction fragment length polymorphism method for Saccharomyces cerevisiae and Saccharomyces bayanus identification in enology. FEMS Microbiol. Lett. 138:239–244, 1996.
   Web of Science ®Google Scholar
• Montrocher, R., Verner, M.-C., Briolay, J., Gautier, C., and Marmeisse, R. Phylogenetic analysis of the Saccharomyces cerevisiae group based on polymorphisms of rDNA spacer sequences. Int. J. Syst. Bacteriol. 48:295–303, 1998.
   PubMedGoogle Scholar
• Nagamine, K., Hase, T., and Notomi, T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell. Probes 16:223–229, 2002.
   PubMed Web of Science ®Google Scholar
• Naumov, G. I. Genetic identification of biological species in the Saccharomyces sensu stricto complex. J. Ind. Microbiol. 17:295–302, 1996.
   Google Scholar
• Naumov, G. I., James, S. A., Naumova, E. S., Louis, E. J., and Roberts, I. N. Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae. Int. J. Syst. Evol. Microbiol. 50:1931–1942, 2000.
   Web of Science ®Google Scholar
• Naumov, G. I., Naumova, E. S., Lantto, R. A., Louis, E. J., and Korhola, M. Genetic homology between Saccharomyces cerevisiae and its sibling species S. paradoxus and S. bayanus: Electrophoretic karyotypes. Yeast 8:599–612, 1992.
   PubMed Web of Science ®Google Scholar
• Naumova, E. S., Bulat, S. A., Mironenko, N. V., and Naumov, G. I. Differentiation of six sibling species in the Saccharomyces sensu stricto complex by multilocus enzyme electrophoresis and UP-PCR analysis. Antonie Leeuwenhoek 83:155–166, 2003.
   Web of Science ®Google Scholar
• Naumova, E. S., Naumov, G. I., Masneuf-Pomarède, I., Aigle, M., and Dubourdieu, D. Molecular genetic study of introgression between Saccharomyces bayanus and S. cerevisiae. Yeast 22:1099–1115, 2005.
   Web of Science ®Google Scholar
• Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N., and Hase, T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28:e63, 2000.
   PubMed Web of Science ®Google Scholar
• Pretorius, I. S., Lambrechts, M. G., and Matmur, J. The glucoamylase multigene family in Saccharomyces cerevisiae var. diastaticus: An overview. Crit. Rev. Biochem. Mol. Biol. 26:53–76, 1991.
   PubMed Web of Science ®Google Scholar
• Rainieri, S., Kodama, Y., Kaneko, Y., Mikata, K., Nakao, Y., and Ashikari, T. Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome. Appl. Environ. Microbiol. 72:3968–3974, 2006.
   PubMed Web of Science ®Google Scholar
• Rainieri, S., Zambonelli, C., and Kaneko, Y. Saccharomyces sensu stricto: Systematics, genetic diversity and evolution. J. Biosci. Bioeng. 96:1–9, 2003.
   Web of Science ®Google Scholar
• Redžepović, S., Orlić, S., Sikora, S., Majdak, A., and Pretorius, I. S. Identification and characterization of Saccharomyces cerevisiae and Saccharomyces paradoxus strains isolated from Croatian vineyards. Lett. Appl. Microbiol. 35:305–310, 2002.
   Web of Science ®Google Scholar
• Ryu, S.-L., Murooka, Y., and Kaneko, Y. Genomic reorganization between two sibling yeast species, Saccharomyces bayanus and Saccharomyces cerevisiae. Yeast 12:757–764, 1996.
   Google Scholar
• Tamai, Y., Momma, T., Yoshimoto, H., and Kaneko, Y. Co-existence of two types of chromosome in the bottom fermenting yeast, Saccharomyces pastorianus. Yeast 14:923–933, 1998.
   Web of Science ®Google Scholar
• Tamai, Y., Tanaka, K., Umemoto, N., Tomizuka, K., and Kaneko, Y. Diversity of the HO gene encoding an endonuclease for mating-type conversion in the bottom fermenting yeast Saccharomyces pastorianus. Yeast 16:1335–1343, 2000.
   Web of Science ®Google Scholar
• Tsuchiya, Y., Ogawa, M., and Nakakita, Y. Primer and primer set for detecting and discriminating yeast, lactic acid bacterium and obligate anaerobe and detection/discrimination method using the same. International Patent WO/2005/093059, 2005.
   Google Scholar
• Tsuchiya, Y., Ogawa, M., Nakakita, Y., Nara, Y., Kaneda, H., Watari, J., Minekawa, H., and Soejima, T. Identification of beer-spoilage microorganisms using the loop-mediated isothermal amplification method. J. Am. Soc. Brew. Chem. 65:77–80, 2007.
   Web of Science ®Google Scholar
• Umemoto, N., Ishiguro, T., Iwawaki, H., Tanaka, K., Mizutani, S., and Kobayashi, O. Comparative genomics of lager beer brewing yeast. Yeast 18:S320, 2001.
   Web of Science ®Google Scholar
• Van der Walt, J. P. Genus 16. Saccharomyces Meyen emend. Reess. In: The Yeasts: A Taxonomic Study. J. Lodder, ed. North-Holland Publishing Co., Amsterdam. Pp. 555–718, 1970.
   Google Scholar
• Vaughan Martini, A. Saccharomyces paradoxus comb nov., a newly separated species of the Saccharomyces sensu stricto complex based upon nDNA/nDNA homologies. Syst. Appl. Microbiol. 12:179–182, 1989.
   Web of Science ®Google Scholar
• Vaughan Martini, A., and Martini, A. Three newly delimited species of Saccharomyces sensu stricto. Antonie Leeuwenhoek 53:77–84, 1987.
   Google Scholar
• Yamagishi, H., and Ogata, T. Chromosomal structures of bottom fermenting yeasts. Syst. Appl. Microbiol. 22:341–353, 1999.
   Web of Science ®Google Scholar
• Yamashita, I., Nakamura, M., and Fukui, S. Gene fusion is a possible mechanism underlying the evolution of STA1. J. Bacteriol. 169:2142–2149, 1987.
   PubMed Web of Science ®Google Scholar
• Yoshida, S., Hashimoto, K., Shimada, E., Ishiguro, T., Minato, T., Mizutani, S., Yoshimoto, H., Tashiro, K., Kuhara, S., and Kobayashi, O. Identification of bottom-fermenting yeast genes expressed during lager beer fermentation. Yeast 24:599–606, 2007.
   Web of Science ®Google Scholar