Evaluation of the potential of trap plants to detect arbuscular mycorrhizal fungi using polymerase chain reaction-denaturing gradient gel electrophoresis analysis

References

• Ahulu , EM , Gollotte , A , Gianinazzi-Pearson , V and Nonaka , M . 2006 . Cooccurring plants forming distinct arbuscular mycorrhizal morphologies harbor similar AM fungal species . Mycorrhiza , 17 : 37 – 49 .
   PubMed Web of Science ®Google Scholar
• Akiyama , K , Matsuzaki , K and Hayashi , H . 2004 . Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi . Nature , 435 : 824 – 827 .
   Google Scholar
• Bever , JD , Morton , JB , Antonovics , J and Schultz , PA . 1996 . Host-dependent sporulation and species diversity of arbuscular mycorrhizal fungi in a mown grassland . J. Ecol. , 84 : 71 – 82 .
   Web of Science ®Google Scholar
• Bharadwaj , DP , Lundquist , PO and Alstrom , S . 2007 . Impact of plant species grown as monocultures on sporulation and root colonization by native arbuscular mycorrhizal fungi in potato . Appl. Soil Ecol. , 35 : 213 – 225 .
   Google Scholar
• Bolan , NS . 1991 . A critical review on the role of mycorrhizal fungi in the uptake of phosphorus by plants . Plant Soil , 134 : 189 – 207 .
   Web of Science ®Google Scholar
• Cabello , MN . 1997 . Hydrocarbon pollution: its effect on native arbuscular mycorrhizal fungi (AMF) . FEMS Microbiol. Ecol. , 22 : 233 – 236 .
   Web of Science ®Google Scholar
• Clapp , JP , Helgason , T , Daniell , TJ and Young , JPW . 2002 . “ Genetic studies of the structure and diversity of arbuscular mycorrhizal fungal communities ” . In Mycorrhizal ecology , Edited by: van der Heijden , MGA and Sanders , IR . 201 – 224 . Berlin Heidelberg, , Germany : Springer-Verlag .
   Google Scholar
• Ferrol , N , Calvente , R , Cano , C , Barea , JM and Azcon-Aguilar , C . 2004 . Analysing arbuscular mycorrhizal fungal diversity in shrub-associated resource islands from a desertification-threatened semiarid Mediterranean ecosystem . Appl. Soil Ecol. , 25 : 123 – 133 .
   Web of Science ®Google Scholar
• Giovannetti , M and Mosse , B . 1980 . An evaluation of techniques for measuring vesicular-arbuscular mycorrhizal infection in roots . New Phytol. , 84 : 489 – 500 .
   Web of Science ®Google Scholar
• van der Heijden , MGA , Klironomos , JN Ursic , M . 1998 . Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity . Nature , 396 : 72 – 75 .
   PubMed Web of Science ®Google Scholar
• van der Heijden , MGA and Scheublin , TR . 2007 . Functional traits in mycorrhizal ecology: their use for predicting the impact of arbuscular mycorrhizal fungal communities on plant growth and ecosystem functioning . New Phytol. , 174 : 244 – 250 .
   PubMed Web of Science ®Google Scholar
• Helgason , T , Daniell , TJ , Husband , R , Fitter , AH and Young , JPW . 1998 . Ploughing up the wood-wide-web? . Nature , 384 : 431
   Google Scholar
• Helgason , T , Merryweather , JW , Denison , J , Wilson , P , Young , JPW and Fitter , AH . 2002 . Selectivity and functional diversity in arbuscular mycorrhizas of co-occurring fungi and plants from a temperate deciduous woodland . J. Ecol. , 90 : 371 – 384 .
   Web of Science ®Google Scholar
• Johnson , D , Vandenkoornhuyse , PJ Leake , JR . 2004 . Plant communities affect arbuscular mycorrhizal fungal diversity and community composition in grassland microcosms . New Phytol. , 161 : 503 – 515 .
   PubMed Web of Science ®Google Scholar
• Kirk , JL , Klironomos , JN , Lee , H and Trevors , JT . 2005 . The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil . Environ Pollut , 133 : 455 – 465 .
   PubMed Web of Science ®Google Scholar
• Kowalchuk , GA , De Souza , FA and van Veen , JA . 2002 . Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenariain Dutch coastal sand dunes . Mol. Ecol. , 11 : 571 – 581 .
   PubMed Web of Science ®Google Scholar
• Kowalchuk , GA , Gerards , S and Woldendorp , JW . 1997 . Detection and characterization of fungal infections of Ammophila arenaria(marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA . Appl. Environ. Microbiol. , 63 : 3858 – 3865 .
   PubMed Web of Science ®Google Scholar
• Lee , J , Lee , S and Young , JPW . 2008 . Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi . FEMS Microbiol. Ecol. , 65 : 339 – 349 .
   PubMed Web of Science ®Google Scholar
• Liu , RJ and Wang , FY . 2003 . Selection of appropriate host plants used in trap culture of arbuscular mycorrhizal fungi . Mycorrhiza , 13 : 123 – 127 .
   PubMed Web of Science ®Google Scholar
• Ma , WK , Siciliano , SD and Germida , JJ . 2005 . A PCR-DGGE method for detecting arbuscular mycorrhizal fungi in cultivated soils . Soil Biol. Biochem. , 37 : 1589 – 1597 .
   Web of Science ®Google Scholar
• Merryweather , J and Fitter , A . 1998 . The arbuscular mycorrhizal fungi of Hyacinthoides non-scriptaII. Seasonal and spatial patterns of fungal populations . New Phytol. , 138 : 131 – 142 .
   Google Scholar
• Miura , Y , Hiraiwa , MN , Ito , T , Itonaga , T , Watanabe , Y and Okabe , S . 2007 . Bacterial community structures in MBRs treating municipal wastewater: relationship between community stability and reactor performance . Water Res. , 41 : 627 – 637 .
   PubMed Web of Science ®Google Scholar
• Moreira , M , Nogueira , MA , Tsai , SM , Gomes-da-Costa , SM and Cardoso , EJBN . 2007 . Sporulation and diversity of arbuscular mycorrhizal fungi in Brazil Pine in the field and in the greenhouse . Mycorrhiza , 17 : 519 – 526 .
   PubMedGoogle Scholar
• Morton , JB , Bentivenga , SP and Wheeler , WW . 1993 . Germ plasm in the International Collection of Arbuscular and Arbuscular-Vesicular Mycorrhizal Fungi (INVAM) and procedures for culture development, documentation and storage . Mycotaxon , 48 : 491 – 528 .
   Web of Science ®Google Scholar
• Muyzer , G , de Waal , EC and Uitterlinden , AG . 1993 . Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis and polymerase chain reaction-amplified genes coding for 16S rRNA . Appl. Environ. Microbiol. , 59 : 695 – 700 .
   PubMed Web of Science ®Google Scholar
• Oehl , F , Sieverding , E , Ineichen , K , Ris , EA , Boller , T and Wiemken , A . 2005 . Community structure of arbuscular mycorrhizal fungi at different soil depths in extensively and intensively managed agroecosystems . New Phytol. , 165 : 273 – 283 .
   PubMed Web of Science ®Google Scholar
• Opik , M , Moora , M , Liira , J , Koljalg , U , Zobel , M and Sen , R . 2003 . Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatillaspp. in boreal Scots pine forest and grassland soils . New Phytol. , 160 : 581 – 593 .
   PubMedGoogle Scholar
• Pacioni , G . 1992 . “ Wet sieving and decanting techniques for the extraction of spores of vesicular-arbuscular fungi ” . In Methods in Microbiology: Techniques for Mycorrhizal Research , Edited by: Norris , JR , Read , DJ and Varma , AK . 777 – 782 . New York, , USA : Academic Press .
   Google Scholar
• Phillips , JM and Hayman , DS . 1970 . Improved procedures for clearing roots and staining parasitic and vesicular-arbuscular mycorrhizal fungi for rapid assessment of infection . Trans. Brit. Mycol. Soc. , 55 : 158 – 160 .
   Web of Science ®Google Scholar
• Pivato , B , Mazurier , S Lemanceau , P . 2007 . Medicago species affect the community composition of arbuscular mycorrhizal fungi associated with roots . New Phytol. , 176 : 197 – 210 .
   PubMed Web of Science ®Google Scholar
• van der Putten , WH , Kowalchuk , GA Brinkman , EP . 2007 . Soil feedback of exotic savanna grass relates to pathogen absence and mycorrhizl slectivity . Ecology , 88 : 978 – 988 .
   PubMed Web of Science ®Google Scholar
• Sanders , IR . 2003 . Preference, specificity and cheating in the arbuscular mycorrhizal symbiosis . Trends Plant Sci. , 8 : 143 – 145 .
   PubMedGoogle Scholar
• Santos , JC , Finlay , RD and Tehler , A . 2006 . Molecular analysis of arbuscular mycorrhizal fungi colonising a semi-natural grassland along a fertilisation gradient . New Phytol. , 172 : 159 – 168 .
   PubMedGoogle Scholar
• Schenck , NC and Perez , Y . 1990 . Manual for the Identification of VA Mycorrhizal Fungi , 3rd edn , 286 Gainesville, Florida, , USA : Synergistic Publications .
   Google Scholar
• Schwarzott , D , Walker , C and Schussler , A . 2001 . Glomus, the largest genus of the arbuscular mycorrhizal fungi (Glomales), is nonmonophyletic . Mol. Phylogenet. Evol. , 21 : 190 – 197 .
   PubMed Web of Science ®Google Scholar
• Simon , L , Lalonde , M and Bruns , TD . 1992 . Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular mycorrhizal fungal communities . Appl. Environ. Microbiol. , 58 : 291 – 295 .
   PubMed Web of Science ®Google Scholar
• Simpson , JM , McCracken , VJ , White , BA , Gaskins , HR and Mackie , RI . 1999 . Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota . J. Microbiol. Methods , 36 : 167 – 179 .
   PubMed Web of Science ®Google Scholar
• Smith , SE and Read , DJ , eds. 1997 . Mycorrhizal Symbiosis , 2nd edn , San Diego, , USA : Academic Press .
   Google Scholar
• de Souza , FA , Kowalchuk , GA , Leeflang , P , van Veen , JA and Smit , E . 2004 . PCR-denaturing gradient gel electrophoresis profiling of inter- and intraspecies 18S rRNA gene sequence heterogeneity is an accurate and sensitive method to assess species diversity of arbuscular mycorrhizal fungi of the genus Gigaspora . Appl. Environ. Microbiol. , 70 : 1413 – 1424 .
   PubMed Web of Science ®Google Scholar
• Stutz , JC , Copeman , R , Martin , CA and Morton , JB . 2000 . Patterns of species composition and distribution of arbuscular mycorrhizal fungi in arid regions of southwestern North America and Namibia, Africa . Can. J. Bot. , 78 : 237 – 245 .
   Google Scholar
• Sun , XT , Yao , Q , Liu , QG and Zhu , HH . 2006 . Capacity evaluation of different media for isolating bacteria populations from the rhizospere of tomato plant s with DGGE . Acta Microbiol. Sin. , 46 : 482 – 486 .
   PubMedGoogle Scholar
• Tamasloukht , M , Sejalon-Delmas , N Kluever , A . 2003 . Root factors induce mitochondrial-related gene expression and fungal respiration during the developmental switch from asymbiosis to presymbiosis in the arbuscular mycorrhizal fungus Gigaspora rosea . Plant Physiol. , 131 : 1468 – 1478 .
   PubMed Web of Science ®Google Scholar
• Tawaraya , K , Hashimoto , K and Wagatsuma , T . 1998 . Effect of root exudate fractions from P-deficient and P-sufficient onion plants on root colonisation by the arbuscular mycorrhizal fungus Gigaspora margarita . Mycorrhiza , 8 : 67 – 70 .
   Web of Science ®Google Scholar
• Vogelsang , KM , Reynolds , HL and Bever , JD . 2006 . Mycorrhizal fungal identity and richness determine the diversity and productivity of a tallgrass prairie system . New Phytol. , 172 : 554 – 562 .
   PubMedGoogle Scholar
• Zhu , HH , Yao , Q , Sun , XT and Hu , YL . 2007 . Colonization, ALP activity and plant growth promotion of native and exotic arbuscular mycorrhizal fungi at low pH . Soil Biol. Biochem. , 39 : 942 – 950 .
   Web of Science ®Google Scholar