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Article

Mammalian DEAD Box Protein Ddx51 Acts in 3′ End Maturation of 28S rRNA by Promoting the Release of U8 snoRNA

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Pages 2947-2956 | Received 24 Feb 2010, Accepted 08 Apr 2010, Published online: 20 Mar 2023

REFERENCES

  • Allmang, C., and D. Tollervey. 1998. The role of the 3′ external transcribed spacer in yeast pre-rRNA processing. J. Mol. Biol. 278:67–78.
  • Atzorn, V., P. Fragapane, and T. Kiss. 2004. U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production. Mol. Cell. Biol. 24:1769–1778.
  • Bachellerie, J. P., J. Cavaillé, and A. Hüttenhofer. 2002. The expanding snoRNA world. Biochimie 84:775–790.
  • Beltrame, M., and D. Tollervey. 1992. Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J. 11:1531–1542.
  • Bernstein, K. A., S. Granneman, A. V. Lee, S. Manickam, and S. J. Baserga. 2006. Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis. Mol. Cell. Biol. 26:1195–1208.
  • Bleichert, F., and S. J. Baserga. 2007. The long unwinding road of RNA helicases. Mol. Cell 27:339–352.
  • Bohnsack, M. T., M. Kos, and D. Tollervey. 2008. Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase. EMBO Rep. 9:1230–1236.
  • Borovjagin, A. V., and S. A. Gerbi. 2005. An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA. Nucleic Acids Res. 33:4995–5005.
  • Cordin, O., J. Banroques, N. K. Tanner, and P. Linder. 2006. The DEAD-box protein family of RNA helicases. Gene 367:17–37.
  • de la Cruz, J., D. Kressler, and P. Linder. 1999. Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem. Sci. 24:192–198.
  • Dragon, F., J. E. G. Gallagher, P. A. Compagnone-Post, B. M. Mitchell, K. A. Porwancher, K. A. Wehner, S. Wormsley, R. E. Settlage, J. Shabanowitz, Y. Osheim, A. L. Beyer, D. F. Hunt, and S. J. Baserga. 2002. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417:967–970.
  • Eichler, D. C., and N. Craig. 1994. Processing of eukaryotic ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 49:197–239.
  • Esguerra, J., J. Warringer, and A. Blomberg. 2008. Functional importance of individual rRNA 2′-O-ribose methylations revealed by high-resolution phenotyping. RNA 14:649–656.
  • Fromont-Racine, M., B. Senger, C. Saveanu, and F. Fasiolo. 2003. Ribosome assembly in eukaryotes. Gene 313:17–42.
  • Fuentes, J., K. Datta, S. Sullivan, A. Walker, and J. Maddock. 2007. In vivo functional characterization of the Saccharomyces cerevisiae 60S biogenesis GTPase Nog1. Mol. Genet. Genomics 278:105–123.
  • Gerbi, S. A., A. V. Borovjagin, M. Ezrokhi, and T. S. Lange. 2001. Ribosome biogenesis: role of small nucleolar RNA in maturation of eukaryotic rRNA. Cold Spring Harb. Symp. Quant. Biol. 66:575–590.
  • Ghosh, T., B. Peterson, N. Tomasevic, and B. A. Peculis. 2004. Xenopus U8 snoRNA binding protein is a conserved nuclear decapping enzyme. Mol. Cell 13:817–828.
  • Golemis, E. A., and R. Brent. 1997. Searching for interacting proteins with the two-hybrid system III, p. 43 –72. In P. L. Bartel and S. Fields (ed.), The yeast two-hybrid system. Oxford University Press, New York, NY.
  • Grandi, P., V. Rybin, J. Bassler, E. Petfalski, D. Strauss, M. Marzioch, T. Schäfer, B. Kuster, H. Tschochner, D. Tollervey, A. C. Gavin, and E. Hurt. 2002. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol. Cell 10:105–115.
  • Granneman, S., K. A. Bernstein, F. Bleichert, and S. J. Baserga. 2006. Comprehensive mutational analysis of yeast DEXD/H box RNA helicases required for small ribosomal subunit synthesis. Mol. Cell. Biol. 26:1183–1194.
  • Gurney, T. J. 1985. Characterization of mouse 45S ribosomal RNA subspecies suggests that the first processing cleavage occurs 600 +/− 100 nucleotides from the 5′ end and the second 500 +/− 100 nucleotides from the 3′ end of a 13.9 kb precursor. Nucleic Acids Res. 13:4905–4919.
  • Henras, A. K., J. Soudet, M. Gérus, S. Lebaron, M. Caizergues-Ferrer, A. Mougin, and Y. Henry. 2008. The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell. Mol. Life Sci. 65:2334–2359.
  • Hinsby, A. M., L. Kiemer, E. O. Karlberg, K. Lage, A. Fausbøll, A. S. Juncker, J. S. Andersen, M. Mann, and S. Brunak. 2006. A wiring of the human nucleolus. Mol. Cell 22:285–295.
  • Hughes, J. M., and M. J. Ares. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J. 10:4231–4239.
  • Jankowsky, E., C. H. Gross, S. Shuman, and A. M. Pyle. 2001. Active disruption of an RNA-protein interaction by a DExH/D RNA helicase. Science 291:121–125.
  • Jensen, B. C., Q. Wang, C. T. Kifer, and M. Parsons. 2003. The NOG1 GTP-binding protein is required for biogenesis of the 60 S ribosomal subunit. J. Biol. Chem. 278:32204–32211.
  • Kallstrom, G., J. Hedges, and A. Johnson. 2003. The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively. Mol. Cell. Biol. 23:4344–4355.
  • Kass, S., K. Tyc, J. A. Steitz, and B. Sollner-Webb. 1990. The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell 60:897–908.
  • Kass, S., N. Craig, and B. Sollner-Webb. 1987. Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific. Mol. Cell. Biol. 7:2891–2898.
  • King, T. H., B. Liu, R. R. McCully, and M. J. Fournier. 2003. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol. Cell 11:425–435.
  • Kiss, T. 2002. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109:145–148.
  • Kos, M., and D. Tollervey. 2005. The Putative RNA helicase Dbp4p is required for release of the U14 snoRNA from preribosomes in Saccharomyces cerevisiae. Mol. Cell 20:53–64.
  • Kressler, D., E. Hurt, and J. Baβler. 30 October 2009, posting date. Driving ribosome assembly. Biochim. Biophys. Acta 10.1016/j.bbamcr.2009.10.009.
  • Lafontaine, D. L., and D. Tollervey. 2001. The function and synthesis of ribosomes. Nat. Rev. Mol. Cell Biol. 2:514–520.
  • Lapik, Y. R., C. J. Fernandes, L. F. Lau, and D. G. Pestov. 2004. Physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis. Mol. Cell 15:17–29.
  • Lapik, Y. R., J. M. Misra, L. F. Lau, and D. G. Pestov. 2007. Restricting conformational flexibility of the switch II region creates a dominant-inhibitory phenotype in Obg GTPase Nog1. Mol. Cell. Biol. 27:7735–7744.
  • Li, H. D., J. Zagorski, and M. J. Fournier. 1990. Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol. 10:1145–1152.
  • Liang, X., and M. J. Fournier. 2006. The helicase Has1p is required for snoRNA release from pre-rRNA. Mol. Cell. Biol. 26:7437–7450.
  • Liang, X., Q. Liu, and M. J. Fournier. 2007. rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol. Cell 28:965–977.
  • Matsuura, S., T. Morimoto, Y. Tashiro, T. Higashinakagawa, and M. Muramatsu. 1974. Ultrastructural and biochemical studies on the precursor ribosomal particles isolated from rat liver nucleoli. J. Cell Biol. 63:629–640.
  • Michot, B., N. Joseph, S. Mazan, and J. P. Bachellerie. 1999. Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences. Nucleic Acids Res. 27:2271–2282.
  • Morrissey, J. P., and D. Tollervey. 1993. Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol. Cell. Biol. 13:2469–2477.
  • Peculis, B. A. 1997. The sequence of the 5′ end of the U8 small nucleolar RNA is critical for 5.8S and 28S rRNA maturation. Mol. Cell. Biol. 17:3702–3713.
  • Peculis, B. A., and J. A. Steitz. 1993. Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte. Cell 73:1233–1245.
  • Peculis, B. A., and J. A. Steitz. 1994. Sequence and structural elements critical for U8 snRNP function in Xenopus oocytes are evolutionarily conserved. Genes Dev. 8:2241–2255.
  • Pestov, D. G., and L. F. Lau. 1994. Genetic selection of growth-inhibitory sequences in mammalian cells. Proc. Natl. Acad. Sci. U. S. A. 91:12549–12553.
  • Pestov, D. G., Y. R. Lapik, and L. F. Lau. 2008. Assays for ribosomal RNA processing and ribosome assembly. Curr. Protoc. Cell Biol., chapter 22, unit 22.11.
  • Saveanu, C., A. Namane, P. Gleizes, A. Lebreton, J. Rousselle, J. Noaillac-Depeyre, N. Gas, A. Jacquier, and M. Fromont-Racine. 2003. Sequential protein association with nascent 60S ribosomal particles. Mol. Cell. Biol. 23:4449–4460.
  • Shcherbik, N., M. Wang, Y. R. Lapik, L. Srivastava, and D. G. Pestov. 2010. Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells. EMBO Rep. 11:106–111.
  • Strezoska, Z., D. G. Pestov, and L. F. Lau. 2000. Bop1 is a mouse WD40 repeat nucleolar protein involved in 28S and 5. 8S RRNA processing and 60S ribosome biogenesis. Mol. Cell. Biol. 20:5516–5528.
  • Strezoska, Z., D. G. Pestov, and L. F. Lau. 2002. Functional inactivation of the mouse nucleolar protein Bop1 inhibits multiple steps in pre-rRNA processing and blocks cell cycle progression. J. Biol. Chem. 277:29617–29625.
  • Strunk, B. S., and K. Karbstein. 2009. Powering through ribosome assembly. RNA 15:2083–2104.
  • Tanner, N. K., and P. Linder. 2001. DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol. Cell 8:251–262.
  • Tanner, N. K., O. Cordin, J. Banroques, M. Doère, and P. Linder. 2003. The Q. motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Mol. Cell 11:127–138.
  • Thiry, M., and D. L. J. Lafontaine. 2005. Birth of a nucleolus: the evolution of nucleolar compartments. Trends Cell Biol. 15:194–199.
  • Tollervey, D. 1987. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J. 6:4169–4175.
  • Tomasevic, N., and B. A. Peculis. 2002. Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence. Mol. Cell. Biol. 22:4101–4112.
  • Tyc, K., and J. A. Steitz. 1989. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 8:3113–3119.
  • Tycowski, K. T., M. D. Shu, and J. A. Steitz. 1994. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. Science 266:1558–1561.
  • Venema, J., and D. Tollervey. 1999. Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet. 33:261–311.
  • Warner, J. R., and R. Soeiro. 1967. Nascent ribosomes from HeLa cells. Proc. Natl. Acad. Sci. U. S. A. 58:1984–1990.

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