The Transcriptional Coactivator SAYP Is a Trithorax Group Signature Subunit of the PBAP Chromatin Remodeling Complex

REFERENCES

• Armstrong, J. A., O. Papoulas, G. Daubresse, A. S. Sperling, J. T. Lis, M. P. Scott, and J. W. Tamkun. 2002. The Drosophila BRM complex facilitates global transcription by RNA polymerase II. EMBO J. 21:5245–5254.
   PubMed Web of Science ®Google Scholar
• Becker, P. B., and W. Horz. 2002. ATP-dependent nucleosome remodeling. Annu. Rev. Biochem. 71:247–273.
   PubMed Web of Science ®Google Scholar
• Cairns, B. R. 2005. Chromatin remodeling complexes: strength in diversity, precision through specialization. Curr. Opin. Genet. Dev. 15:185–190.
   PubMed Web of Science ®Google Scholar
• Cairns, B. R. 2007. Chromatin remodeling: insights and intrigue from single-molecule studies. Nat. Struct. Mol. Biol. 14:989–996.
   PubMed Web of Science ®Google Scholar
• Chalkley, G. E., and C. P. Verrijzer. 2004. Immuno-depletion and purification strategies to study chromatin-remodeling factors in vitro. Methods Enzymol. 377:421–442.
   PubMedGoogle Scholar
• Chen, J., and T. K. Archer. 2005. Regulating SWI/SNF subunit levels via protein-protein interactions and proteasomal degradation: BAF155 and BAF170 limit expression of BAF57. Mol. Cell. Biol. 25:9016–9027.
   PubMedGoogle Scholar
• Collins, R. T., T. Furukawa, N. Tanese, and J. E. Treisman. 1999. Osa associates with the Brahma chromatin remodeling complex and promotes the activation of some target genes. EMBO J. 18:7029–7040.
   PubMedGoogle Scholar
• Crosby, M. A., C. Miller, T. Alon, K. L. Watson, C. P. Verrijzer, R. Goldman-Levi, and N. B. Zak. 1999. The trithorax group gene moira encodes a brahma-associated putative chromatin-remodeling factor in Drosophila melanogaster. Mol. Cell. Biol. 19:1159–1170.
   PubMedGoogle Scholar
• Davis, M. B., G. E. Carney, A. E. Robertson, and M. Bender. 2005. Phenotypic analysis of EcR-A mutants suggests that EcR isoforms have unique functions during Drosophila development. Dev. Biol. 282:385–396.
   PubMed Web of Science ®Google Scholar
• Harlow, E., and D. Lane. 1998. Antibodies: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
   Google Scholar
• Heberlein, U., and R. Tjian. 1988. Temporal pattern of alcohol dehydrogenase gene transcription reproduced by Drosophila stage-specific embryonic extracts. Nature 331:410–415.
   PubMedGoogle Scholar
• Irizarry, R. A., B. M. Bolstad, F. Collin, L. M. Cope, B. Hobbs, and T. P. Speed. 2003. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31:e15.
   PubMed Web of Science ®Google Scholar
• Kal, A. J., T. Mahmoudi, N. B. Zak, and C. P. Verrijzer. 2000. The Drosophila brahma complex is an essential coactivator for the trithorax group protein zeste. Genes Dev. 14:1058–1071.
   PubMedGoogle Scholar
• Kennison, J. A. 2004. Introduction to Trx-G and Pc-G genes. Methods Enzymol. 377:61–70.
   PubMed Web of Science ®Google Scholar
• Kennison, J. A., and J. W. Tamkun. 1988. Dosage-dependent modifiers of polycomb and antennapedia mutations in Drosophila. Proc. Natl. Acad. Sci. USA 85:8136–8140.
   PubMed Web of Science ®Google Scholar
• Kornberg, R. D. 2007. The molecular basis of eukaryotic transcription. Proc. Natl. Acad. Sci. USA 104:12955–12961.
   PubMed Web of Science ®Google Scholar
• Lall, S. 2007. Primers on chromatin. Nat. Struct. Mol. Biol. 14:1110–1115.
   PubMedGoogle Scholar
• Lam, G., and C. S. Thummel. 2000. Inducible expression of double-stranded RNA directs specific genetic interference in Drosophila. Curr. Biol. 10:957–963.
   PubMedGoogle Scholar
• Lemon, B., C. Inouye, D. S. King, and R. Tjian. 2001. Selectivity of chromatin-remodelling cofactors for ligand-activated transcription. Nature 414:924–928.
   PubMed Web of Science ®Google Scholar
• Mohrmann, L., K. Langenberg, J. Krijgsveld, A. J. Kal, A. J. Heck, and C. P. Verrijzer. 2004. Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes. Mol. Cell. Biol. 24:3077–3088.
   PubMedGoogle Scholar
• Mohrmann, L., and C. P. Verrijzer. 2005. Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes. Biochim. Biophys. Acta 1681:59–73.
   PubMedGoogle Scholar
• Moshkin, Y. M., L. Mohrmann, W. F. van Ijcken, and C. P. Verrijzer. 2007. Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control. Mol. Cell. Biol. 27:651–661.
   PubMedGoogle Scholar
• Naar, A. M., B. D. Lemon, and R. Tjian. 2001. Transcriptional coactivator complexes. Annu. Rev. Biochem. 70:475–501.
   PubMed Web of Science ®Google Scholar
• Neely, K. E., and J. L. Workman. 2002. The complexity of chromatin remodeling and its links to cancer. Biochim. Biophys. Acta 1603:19–29.
   PubMedGoogle Scholar
• Papoulas, O., S. J. Beek, S. L. Moseley, C. M. McCallum, M. Sarte, A. Shearn, and J. W. Tamkun. 1998. The Drosophila trithorax group proteins BRM, ASH1 and ASH2 are subunits of distinct protein complexes. Development 125:3955–3966.
   PubMedGoogle Scholar
• Phelan, M. L., S. Sif, G. J. Narlikar, and R. E. Kingston. 1999. Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. Mol. Cell 3:247–253.
   PubMed Web of Science ®Google Scholar
• Roberts, C. W., and S. H. Orkin. 2004. The SWI/SNF complex: chromatin and cancer. Nat. Rev. Cancer 4:133–142.
   PubMed Web of Science ®Google Scholar
• Roeder, R. G. 2005. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett. 579:909–915.
   PubMed Web of Science ®Google Scholar
• Rousseeuw, P. J., and K. van Driessen. 1999. A fast algorithm for the minimum covariance determinant estimator. Technometrics 41:212–223.
   Web of Science ®Google Scholar
• Shidlovskii, Y. V., A. N. Krasnov, J. V. Nikolenko, L. A. Lebedeva, M. Kopantseva, M. A. Ermolaeva, Y. V. Ilyin, E. N. Nabirochkina, P. G. Georgiev, and S. G. Georgieva. 2005. A novel multidomain transcription coactivator SAYP can also repress transcription in heterochromatin. EMBO J. 24:97–107.
   PubMed Web of Science ®Google Scholar
• Simon, J. A., and J. W. Tamkun. 2002. Programming off and on states in chromatin: mechanisms of polycomb and trithorax group complexes. Curr. Opin. Genet. Dev. 12:210–218.
   PubMedGoogle Scholar
• Smith, C. L., and C. L. Peterson. 2005. ATP-dependent chromatin remodeling. Curr. Top Dev. Biol. 65:115–148.
   PubMed Web of Science ®Google Scholar
• Tamkun, J. W., R. Deuring, M. P. Scott, M. Kissinger, A. M. Pattatucci, T. C. Kaufman, and J. A. Kennison. 1992. brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell 68:561–572.
   PubMed Web of Science ®Google Scholar
• Treisman, J. E., A. Luk, G. M. Rubin, and U. Heberlein. 1997. eyelid antagonizes wingless signaling during Drosophila development and has homology to the Bright family of DNA-binding proteins. Genes Dev. 11:1949–1962.
   PubMedGoogle Scholar
• Vries, R. G., V. Bezrookove, L. M. Zuijderduijn, S. K. Kia, A. Houweling, I. Oruetxebarria, A. K. Raap, and C. P. Verrijzer. 2005. Cancer-associated mutations in chromatin remodeler hSNF5 promote chromosomal instability by compromising the mitotic checkpoint. Genes Dev. 19:665–670.
   PubMed Web of Science ®Google Scholar
• Ward, R. E., J. Evans, and C. S. Thummel. 2003. Genetic modifier screens in Drosophila demonstrate a role for Rho1 signaling in ecdysone-triggered imaginal disc morphogenesis. Genetics 165:1397–1415.
   PubMedGoogle Scholar
• Ward, R. E., P. Reid, A. Bashirullah, P. P. D'Avino, and C. S. Thummel. 2003. GFP in living animals reveals dynamic developmental responses to ecdysone during Drosophila metamorphosis. Dev. Biol. 256:389–402.
   PubMedGoogle Scholar
• Wilm, M., A. Shevchenko, T. Houthaeve, S. Breit, L. Schweigerer, T. Fotsis, and M. Mann. 1996. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry. Nature 379:466–469.
   PubMed Web of Science ®Google Scholar
• Worby, C. A., N. Simonson-Leff, and J. E. Dixon. 2001. RNA interference of gene expression (RNAi) in cultured Drosophila cells. Sci. STKE 2001:PL1.
   PubMedGoogle Scholar
• Yan, Z., K. Cui, D. M. Murray, C. Ling, Y. Xue, A. Gerstein, R. Parsons, K. Zhao, and W. Wang. 2005. PBAF chromatin-remodeling complex requires a novel specificity subunit, BAF200, to regulate expression of selective interferon-responsive genes. Genes Dev. 19:1662–1667.
   PubMedGoogle Scholar
• Yang, X., R. Zaurin, M. Beato, and C. L. Peterson. 2007. Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat. Struct. Mol. Biol. 14:540–547.
   PubMedGoogle Scholar