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Article

macroH2A1 Histone Variants Are Depleted on Active Genes but Concentrated on the Inactive X Chromosome

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Pages 4410-4420 | Received 23 Nov 2005, Accepted 28 Mar 2006, Published online: 27 Mar 2023

REFERENCES

  • Abbott, D. W., M. Laszczak, J. D. Lewis, H. Su, S. C. Moore, M. Hills, S. Dimitrov, and J. Ausio. 2004. Structural characterization of macroH2A containing chromatin. Biochemistry 43:1352–1359.
  • Akbarian, S., R. Z. Chen, J. Gribnau, T. P. Rasmussen, H. Fong, R. Jaenisch, and E. G. Jones. 2001. Expression pattern of the Rett syndrome gene MeCP2 in primate prefrontal cortex. Neurobiol. Dis. 8:784–791.
  • Allegra, P., R. Sterner, D. F. Clayton, and V. G. Allfrey. 1987. Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences. J. Mol. Biol. 196:379–388.
  • Allen, M. D., A. M. Buckle, S. C. Cordell, J. Lowe, and M. Bycroft. 2003. The crystal structure of AF1521, a protein from Archaeoglobus fulgidus with homology to the non-histone domain of macroH2A. J. Mol. Biol. 330:503–511.
  • Angelov, D., A. Molla, P. Y. Perche, F. Hans, J. Cote, S. Khochbin, P. Bouvet, and S. Dimitrov. 2003. The histone variant macroH2A interferes with transcription factor binding and SWI/SNF nucleosome remodeling. Mol. Cell 11:1033–1041.
  • Beletskii, A., Y.-K. Hong, J. Pehrson, M. Egholm, and W. M. Strauss. 2001. PNA interference mapping demonstrates functional domains in the noncoding RNA Xist. Proc. Natl. Acad. Sci. USA 98:9215–9220.
  • Borsani, G., R. Tonlorenzi, M. C. Simmler, L. Dandolo, D. Arnaud, V. Capra, M. Grompe, A. Pizzuti, D. Muzny, C. Lawrence, and A. Ballabio. 1991. Characterization of a murine gene expressed from the inactive X chromosome. Nature 351:325–329.
  • Brockdorff, N., A. Ashworth, G. F. Kay, P. Cooper, S. Smith, V. M. McCabe, D. P. Norris, G. D. Penny, D. Patel, and S. Rastan. 1991. Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome. Nature 351:329–331.
  • Brown, C. J., A. Ballabio, J. L. Rupert, R. G. Lafreniere, M. Grompe, R. Tonlorenzi, and H. F. Willard. 1991. A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature 349:38–44.
  • Burd, C. G., M. S. Swanson, M. Gorlach, and G. Dreyfuss. 1989. Primary structures of the heterogeneous nuclear ribonucleoprotein A2, B1, and C2 proteins: a diversity of RNA binding proteins is generated by small peptide inserts. Proc. Natl. Acad. Sci. USA 86:9788–9792.
  • Chadwick, B. P., C. M. Valley, and H. F. Willard. 2001. Histone variant macroH2A contains two distinct macrochromatin domains capable of directing macroH2A to the inactive X chromosome. Nucleic Acids Res. 29:2699–2705.
  • Chadwick, B. P., and H. F. Willard. 2001. Histone H2A variants and the inactive X chromosome: identification of a second macroH2A variant. Hum. Mol. Genet. 10:1101–1113.
  • Chakravarthy, S., S. K. Y. Gundimella, C. Caron, P.-Y. Perche, J. R. Pehrson, S. Khochbin, and K. Luger. 2005. Structural characterization of the histone variant macroH2A. Mol. Cell. Biol. 25:7616–7624.
  • Costanzi, C., and J. R. Pehrson. 1998. Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals. Nature 393:599–601.
  • Costanzi, C., and J. R. Pehrson. 2001. MACROH2A2, a new member of the MACROH2A core histone family. J. Biol. Chem. 276:21776–21784.
  • Costanzi, C., P. Stein, D. M. Worrad, R. M. Schultz, and J. R. Pehrson. 2000. Histone macroH2A1 is concentrated in the inactive X chromosome of female preimplantation embryos. Development 127:2283–2289.
  • Csankovszki, G., B. Panning, B. Bates, J. R. Pehrson, and R. Jaenisch. 1999. Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation. Nat. Genet. 22:323–324.
  • Davis, A. H., T. L. Reudelhuber, and W. T. Garrard. 1983. Variegated chromatin structures of mouse ribosomal RNA Genes. J. Mol. Biol. 167:133–155.
  • Ehrmann, I. E., P. S. Ellis, S. Mazeyrat, S. Duthie, N. Brockdorff, M. G. Mattei, M. A. Gavin, N. A. Affara, G. M. Brown, E. Simpson, M. J. Mitchell, and D. M. Scott. 1998. Characterization of genes encoding translation initiation factor eIF-2gamma in mouse and human: sex chromosome localization, escape from X-inactivation and evolution. Hum. Mol. Genet. 7:1725–1737.
  • Filippova, G. N., M. K. Cheng, J. M. Moore, J. P. Truong, Y. J. Hu, D. K. Nguyen, K. D. Tsuchiya, and C. M. Disteche. 2005. Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development. Dev. Cell 8:31–42.
  • Grigoryev, S. A., T. Nikitina, J. R. Pehrson, P. B. Singh, and C. L. Woodcock. 2004. Dynamic relocation of epigenetic chromatin markers reveals an active role of constitutive heterochromatin in the transition from proliferation to quiescence. J. Cell Sci. 117:6153–6162.
  • Harbers, K., U. Francke, P. Soriano, R. Jaenisch, and U. Muller. 1990. Structure and chromosomal mapping of a highly polymorphic repetitive DNA sequence from the pseudoautosomal region of the mouse sex chromosomes. Cytogenet. Cell Genet. 53:129–133.
  • Hernandez-Munoz, I., A. H. Lund, P. van der Stoop, E. Boutsma, I. Muijrers, E. Verhoeven, D. A. Nusinow, B. Panning, Y. Marahrens, and M. van Lohuizen. 2005. Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase. Proc. Natl. Acad. Sci. USA 102:7635–7640.
  • Hoyer-Fender, S., C. Costanzi, and J. R. Pehrson. 2000. Histone macroH2A1.2 is concentrated in the XY-body by the early pachytene stage of spermatogenesis. Exp. Cell Res. 258:254–260.
  • Ishikawa, F., M. J. Matunis, G. Dreyfuss, and T. R. Cech. 1993. Nuclear proteins that bind the pre-mRNA 3′ splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol. Cell. Biol. 13:4301–4310.
  • Jurka, J., E. Zietkiewicz, and D. Labuda. 1995. Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era. Nucleic Acids Res. 23:170–175.
  • Karras, G. I., G. Kustatscher, H. R. Buhecha, M. D. Allen, C. Pugieux, F. Sait, M. Bycroft, and A. G. Ladurner. 2005. The macro domain is an ADP-ribose binding module. EMBO J. 24:1911–1920.
  • Krogan, N. J., M. C. Keogh, N. Datta, C. Sawa, O. W. Ryan, H. Ding, R. A. Haw, J. Pootoolal, A. Tong, V. Canadien, D. P. Richards, X. Wu, A. Emili, T. R. Hughes, S. Buratowski, and J. F. Greenblatt. 2003. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol. Cell 12:1565–1576.
  • Kusch, T., L. Florens, W. H. Macdonald, S. K. Swanson, R. L. Glaser, J. R. Yates III, S. M. Abmayr, M. P. Washburn, and J. L. Workman. 2004. Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions. Science 306:2084–2087.
  • Kustatscher, G., M. Hothorn, C. Pugieux, K. Scheffzek, and A. G. Ladurner. 2005. Splicing regulates NAD metabolite binding to histone macroH2A. Nat. Struct. Mol. Biol. 12:624–625.
  • Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685.
  • Libertini, L. J., and E. W. Small. 1980. Salt induced transitions of chromatin core particles studied by tyrosine fluorescence anisotropy. Nucleic Acids Res. 8:3517–3534.
  • Lyon, M. F. 1998. X-chromosome inactivation: a repeat hypothesis. Cytogenet. Cell Genet. 80:133–137.
  • Maison, C., and G. Almouzni. 2004. HP1 and the dynamics of heterochromatin maintenance. Nat. Rev. Mol. Cell Biol. 5:296–304.
  • McKay, S. J., and H. Cooke. 1992. hnRNP A2/B1 binds specifically to single stranded vertebrate telomeric repeat TTAGGGn. Nucleic Acids Res. 20:6461–6464.
  • Mizuguchi, G., X. Shen, J. Landry, W.-H. Wu, S. Sen, and C. Wu. 2004. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303:343–348.
  • Palmer, S., J. Perry, D. Kipling, and A. Ashworth. 1997. A gene spans the pseudoautosomal boundary in mice. Proc. Natl. Acad. Sci. USA 94:12030–12035.
  • Pehrson, J. R. 2004. Core histone variants, p. 181–204. In J. Zlatanova and S. H. Leuba (ed.), Chromatin structure and dynamics: state of the art, vol. 29. Elsevier, Amsterdam, The Netherlands.
  • Pehrson, J. R., C. Costanzi, and C. Dharia. 1997. Developmental and tissue expression patterns of histone macroH2A1 subtypes. J. Cell. Biochem. 65:107–113.
  • Pehrson, J. R., and V. A. Fried. 1992. MacroH2A, a core histone containing a large nonhistone region. Science 257:1398–1400.
  • Pehrson, J. R., and R. N. Fuji. 1998. Evolutionary conservation of macroH2A subtypes and domains. Nucleic Acids Res. 26:2837–2842.
  • Perche, P.-Y., C. Vourc'h, L. Konecny, C. Souchier, M. Robert-Nicoud, S. Dimitrov, and S. Khochbin. 2000. Higher concentrations of histone macroH2A in the Barr body are correlated with higher nucleosome density. Curr. Biol. 10:1531–1534.
  • Rappold, G. A. 1993. The pseudoautosomal regions of the human sex chromosomes. Hum. Genet. 92:315–324.
  • Rasmussen, T. P., T. Huang, M. A. Mastrangelo, J. Loring, B. Panning, and R. Jaenisch. 1999. Messenger RNAs encoding mouse histone macroH2A1 isoforms are expressed at similar levels in male and female cells and result from alternative splicing. Nucleic Acids Res. 27:3685–3689.
  • Riggs, A. D. 1990. Marsupials and the mechanisms of X chromosome inactivation. Aust. J. Zool. 37:419–441.
  • Sheardown, S., D. Norris, A. Fisher, and N. Brockdorff. 1996. The mouse Smcx gene exhibits developmental and tissue specific variation in degree of escape from X inactivation. Hum. Mol. Genet. 5:1355–1360.
  • Shevchenko, A., M. Wilm, O. Vorm, and M. Mann. 1996. Mass spectrometric sequencing of proteins silver stained polyacrylamide gels. Anal. Chem. 68:850–858.
  • Smit, A. F., and A. D. Riggs. 1995. MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res. 23:98–102.
  • Smit, A. F. A. 1993. Identification of a new, abundant superfamily of mammalian LTR-transposons. Nucleic Acids Res. 21:1863–1872.
  • Smit, A. F. A., R. Hubley, and P. Green. 1996-2004. RepeatMasker Open-3.0._1996–2004.
  • Smith, R. D., R. L. Seale, and J. Yu. 1983. Transcribed chromatin exhibits an altered nucleosomal spacing. Proc. Natl. Acad. Sci. USA 80:5505–5509.
  • Ueki, K., T. Kondo, and C. R. Kahn. 2004. Suppressor of cytokine signaling 1 (SOCS-1) and SOCS-3 cause insulin resistance through inhibition of tyrosine phosphorylation of insulin receptor substrate proteins by discrete mechanisms. Mol. Cell. Biol. 24:5434–5446.
  • van Holde, K. E. 1988. Chromatin. Springer-Verlag, New York, N.Y.
  • Zhang, R., M. V. Poustovoitov, X. Ye, H. A. Santos, W. Chen, S. M. Daganzo, J. P. Erzberger, I. G. Serebriiskii, A. A. Canutescu, R. L. Dunbrack, J. R. Pehrson, J. M. Berger, P. D. Kaufman, and P. D. Adams. 2005. Formation of MacroH2A-containing senescence-associated heterochromatin foci and senescence driven by ASF1a and HIRA. Dev. Cell 8:19–30.

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