2
Views
29
CrossRef citations to date
0
Altmetric
Research Article

Initiation Binding Receptor, a Factor That Binds to the Transcription Initiation Site of the Histone h5 Gene, Is a Glycosylated Member of a Family of Cell Growth Regulators

, , &
Pages 6670-6685 | Received 02 Jun 1995, Accepted 28 Aug 1995, Published online: 30 Mar 2023

REFERENCES

  • Acker, J., M. Wintzerith, M. Vigneron, and C. Kedinger. 1993. Structure of the gene encoding the 14.5 kDa subunit of human RNA polymerase II. Nucleic Acids Res. 21:5345–5350.
  • Affolter, M., J. Côté, J. Renaud, and A. Ruiz-Carrillo. 1987. Regulation of histone and βA-globin gene expression during differentiation of chicken erythroid cells. Mol. Cell. Biol. 7:3663–3672.
  • Banville, D., and Y. Boie. 1989. Retroviral long terminal repeat is the promoter of the gene encoding the tumor-associated calcium-binding protein oncomodulin in the rat. J. Mol. Biol. 207:481–490.
  • Barik, S., and A. K. Banerjee. 1992. Phosphorylation by cellular casein kinase II is essential for transcriptional activity of vesicular stomatitis virus phos-phoprotein P. Proc. Natl. Acad. Sci. USA 89:6570–6574.
  • Bates, D. L., and J. O. Thomas. 1981. Histones H1 and H5: one or two molecules per nucleosome? Nucleic Acids Res. 9:5883–5894.
  • Blanar, M. A., and W. J. Rutter. 1992. Interaction cloning: identification of a helix-loop-helix zipper protein that interacts with c-Fos. Science 256:1014–1018.
  • Bodmer, M., and M. Ashburner. 1984. Conservation and change in the DNA sequences coding for alcohol dehydrogenase in sibling species of Drosophila. Nature (London) 309:425–430.
  • Bousset, K., M. Henriksson, J. M. Luscher-Firzlaff, D. W. Litchfield, and B. Luscher. 1993. Identification of casein kinase II phosphorylation sites in Max: effects on DNA-binding kinetics of homo- and Myc/Max heterodimers. Oncogene 8:3211–3220.
  • Braidotti, G., I. A. Borthwick, and B. K. May. 1993. Identification of regulatory sequences in the gene for 5-aminolevulinate synthase from rat. J. Biol. Chem. 268:1109–1117.
  • Brayton, K. A., Z. Chen, G. Zhou, P. L. Nagy, A. Gavalas, J. M. Trent, L. L. Deaven, J. E. Dixon, and H. Zalkin. 1994. Two genes for de novo purine nucleotide synthesis on human chromosome 4 are closely linked and diver-gently transcribed. J. Biol. Chem. 269:5313–5321.
  • Calzone, F. J., C. Hoog, D. B. Teplow, A. E. Cutting, R. W. Zeller, R. J. Britten, and E. H. Davidson. 1991. Gene regulatory factors of the sea urchin embryo. I. Purification by affinity chromatography and cloning of P3A2, a novel DNA-binding protein. Development 112:335–350.
  • Chang, D. D., and D. A. Clayton. 1989. Mouse RNase MRP RNA is encoded by a nuclear gene and contains a decamer sequence complementary to a conserved region of mitochondrial RNA substrate. Cell 56:131–139.
  • Chau, C. M. A., M. J. Evans, and R. C. Scarpulla. 1992. Nuclear respiratory factor 1 activation sites in genes encoding the γ-subunit of ATP synthase, eukaryotic initiation factor 2α, and tyrosine aminotransferase: specific interaction of purified NRF-1 with multiple target genes. J. Biol. Chem. 267: 6999–7006.
  • Cooke, D. W., L. A. Bankert, C. T. Roberts, D. Leroith, and S. J. Casella. 1991. Analysis of the human type-I insulin-like growth factor receptor promoter region. Biochem. Biophys. Res. Commun. 177:1113–1120.
  • Côté, J., and A. Ruiz-Carrillo. 1993. Primers for mitochondrial DNA replication generated by endonuclease G. Science 261:765–769.
  • Crimmins, D. L., D. W. McCourt, R. S. Thoma, M. G. Scott, K. Macke, and B. D. Schwartz. 1990. In situ chemical cleavage of proteins immobilized to glass-fiber and polyvinylidenedifluoride membranes: cleavage at tryptophan residues with 2-(29-nitrophenylsulfenyl)-3-methyl-39-bromoindolenine to obtain internal amino acid sequence. Anal. Biochem. 187:27–38.
  • DeSimone, S. M., and K. White. 1993. The Drosophila erect wing gene, which is important for both neuronal and muscle development, encodes a protein which is similar to the sea urchin P3A2 DNA binding protein. Mol. Cell. Biol. 13:3641–3649.
  • Efiok, B. J. S., J. A. Chiorini, and B. Safer. 1994. A key transcription factor for eukaryotic initiation factor-2α is strongly homologous to developmental transcription factors and may link metabolic genes to cellular growth and development. J. Biol. Chem. 269:18921–18939.
  • Evans, M. J., and R. C. Scarpulla. 1990. NRF-1: a trans-activator of nuclear-encoded respiratory genes in animal cells. Genes Dev. 4:1023–1034.
  • Forrest, G. L., S. Akman, J. Doroshow, H. Rivera, and W. D. Kaplan. 1991. Genomic sequence and expression of a cloned human carbonyl reductase gene with daunorubicin reductase activity. Mol. Pharmacol. 40:502–507.
  • Furuno, N., K. Nakagawa, U. Eguchi, M. Ohtsubo, T. Nishimoto, E. Soeda, and M. O. Ohtubo. 1991. Complete nucleotide sequence of the human RCC1 gene involved in coupling between DNA replication and mitosis. Genomics 11:459–461.
  • Gaeta, B. A., I. Borthwick, and K. K. Stanley. 1994. The 59-flanking region of the α-2MR/LRP gene contains an enhancer-like cluster of SP1 binding-sites. Biochim. Biophys. Acta 1219:307–313.
  • Ge, H., Y. Zhao, B. T. Chait, and R. G. Roeder. 1994. Phosphorylation negatively regulates the function of coactivator PC4. Proc. Natl. Acad. Sci. USA 91:12691–12695.
  • Gehring, W. J. 1992. The homeobox in perspective. Trends Biochem. Sci. 17: 277–280.
  • Gómez-Cuadrado, A., M. Batchvarova, and A. Ruiz-Carrillo. Unpublished data.
  • Gómez-Cuadrado, A., S. Rousseau, J. Renaud, and A. Ruiz-Carrillo. 1992. Repression of the H5 histone gene by a factor from erythrocytes that binds to the region of transcription initiation. EMBO J. 11:1857–1866.
  • Graf, T. 1992. Myb: a transcriptional activator linking proliferation and differentiation in hematopoietic cells. Curr. Opin. Genet. Dev. 2:249–255.
  • Hagen, G., S. Muller, M. Beato, and G. Suske. 1992. Cloning by recognition site screening of two novel GT box binding proteins: a family of SP1 related genes. Nucleic Acids Res. 20:5519–5525.
  • Hai, T., F. Liu, W. J. Coukos, and M. R. Green. 1989. Transcription factor ATF cDNA clones: an extensive family of leucine zipper proteins able to selectively form DNA-binding heterodimers. Genes Dev. 3:2083–2090.
  • Hardin, S. H., C. D. Carpenter, P. E. Hardin, A. M. Bruskin, and W. H. Klein. 1985. Structure of the Spec1 gene encoding a major calcium-binding protein in the embryonic ectoderm of the sea urchin Strongylocentrotus purpuratus. J. Mol. Biol. 186:243–255.
  • Hart, G. W., R. S. Haltiwanger, G. D. Holt, and W. G. Kelly. 1989. Glyco-sylation in the nucleus and cytoplasm. Annu. Rev. Biochem. 58:841–874.
  • Hata, A., S. Ohno, Y. Akita, and K. Suzuki. 1989. Tandemly reiterated negative enhancer-like elements regulate transcription of a human gene for large subunit of calcium-dependent protease. J. Biol. Chem. 264:6404–6411.
  • Hayashizaki, Y., H. Shibata, S. Hirotsune, H. Sugino, Y. Okazaki, N. Sasaki, K. Hirose, H. Imoto, H. Okuizumi, M. Muramatsu, et al. 1994. Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method. Nat. Genet. 6:33–40.
  • Hess, N., B. Merz, and E. D. Gundelfinger. 1994. Acetylcholine receptors of the Drosophila brain: a 900 bp promoter fragment contains the essential information for specific expression of the ard gene in vivo. FEBS Lett. 346: 135–140.
  • Howe, L. R., S. J. Leevers, N. Gómez, S. Nakielny, P. Cohen, and C. J. Marshall. 1992. Activation of the MAP kinase pathway by the protein kinase raf. Cell 71:335–342.
  • Humbelin, M., B. Safer, J. A. Chiorini, J. W. B. Hershey, and R. B. Cohen. 1989. Isolation and characterization of the promoter and flanking regions of the gene encoding the human protein-synthesis-initiation factor 2α. Gene 81:315–324.
  • Hunter, T., and M. Karin. 1992. The regulation of transcription by phos-phorylation. Cell 70:375–387.
  • Issinger, O.-G. 1993. Casein kinases: pleiotropic mediators of cellular regulation. Pharmacol. Ther. 59:1–30.
  • Jackson, S. P., and R. Tjian. 1988. O-glycosylation of eukaryotic transcription factors: implication for mechanisms of transcriptional regulation. Cell 55:125–133.
  • Jacob, W. F., T. A. Silverman, R. B. Cohen, and B. Safer. 1989. Identification and characterization of a novel-transcription factor participating in the expression of eukaryotic initiation factor 2α. J. Biol. Chem. 264:20372–20384.
  • Jacobs, S. M., K. M. Gorse, and E. H. Westin. 1994. Identification of a second promoter in the human c-myb proto-oncogene. Oncogene 9:227–235.
  • Kearse, K. P., and G. W. Hart. 1991. Lymphocyte activation induces rapid changes in nuclear and cytoplasmic glycoproteins. Proc. Natl. Acad. Sci. USA 88:1701–1705.
  • Kho, C. J., and H. Zarbl. 1992. A rapid and efficient protocol for sequencing plasmid DNA. Biotechniques 12:228–230.
  • Koller, M., B. Schnyder, and E. E. Strehler. 1990. Structural organization of the human CaMIII calmodulin gene. Biochim. Biophys. Acta 1087:180–189.
  • Kozak, M. 1980. Evaluation of the scanning model for initiation of protein synthesis in eukaryotes. Cell 22:7–8.
  • Kunze, N., G. C. Yang, M. Dolberg, R. Sundarp, R. Knippers, and A. Richter. 1991. Structure of the human type I DNA topoisomerase gene. J. Biol. Chem. 266:9610–9616.
  • Kurihara, T., K. Monoh, K. Sakimura, and Y. Takahashi. 1990. Alternative splicing of mouse brain 29,39-cyclic-nucleotide 39-phosphodiesterase mRNA. Biochem. Biophys. Res. Commun. 170:1074–1081.
  • Li, Y., R. Mortensen, and E. J. Neer. 1994. Regulation of α0 expression by the 59-flanking region of the α0 gene. J. Biol. Chem. 269:27589–27594.
  • Lowndes, N. F., J. Paul, J. Wu, and M. Allan. 1989. c-Ha-ras gene bidirectional promoter expressed in vitro: location and regulation. Mol. Cell. Biol. 9:3758–3770.
  • Macarthur, H., and G. Walter. 1984. Monoclonal antibodies specific for the carboxyl terminus of simian virus 40 large T antigen. J. Virol. 52:483–491.
  • Manak, J. R., N. de Bisschop, R. M. Kris, and R. Prywes. 1990. Casein kinase II enhances the DNA binding activity of serum response factor. Genes Dev. 4:955–967.
  • Mandrup, S., R. Hummel, S. Ravn, G. Jensen, P. H. Andreasen, N. Gregersen, J. Knudsen, and K. Kristiansen. 1992. Acyl-CoA-binding protein/ diazepam-binding inhibitor gene and pseudogenes: a typical housekeeping gene family. J. Mol. Biol. 228:1011–1022.
  • Maragos, C., W. M. Hutchison, K. Hayasaka, G. K. Brown, and H.-H. Dahl. 1989. Structural organization of the gene for the E1α subunit of the human pyruvate dehydrogenase complex. J. Biol. Chem. 264:12294–12298.
  • Marais, R. M., J. J. Hsuan, C. McGuigan, J. Wynne, and R. Treisman. 1992. Casein kinase II phosphorylation increases the rate of serum response factor-binding site exchange. EMBO J. 11:97–105.
  • Matsuda, C., H. Endo, S. Ohta, and Y. Kagawa. 1993. Gene structure of human mitochondrial ATP synthase γ-subunit: tissue specificity produced by alternative RNA splicing. J. Biol. Chem. 268:24950–24958.
  • Mayer Jaekel, R. E., H. Ohkura, R. Gomes, C. E. Sunkel, S. Baumgartner, B. A. Hemmings, and D. M. Glover. 1993. The 55 kd regulatory subunit of Drosophila protein phosphatase 2A is required for anaphase. Cell 72:621–633.
  • Melton, D. W., C. McEwan, A. B. McKie, and A. M. Reid. 1986. Expression of the mouse HPRT gene: deletional analysis of the promoter region of an X-chromosome linked housekeeping gene. Cell 44:319–328.
  • Morrissey, J. H. 1981. Silver stain for proteins in polyacrylamide gels: a modified procedure with enhanced uniform sensitivity. Anal. Biochem. 117: 307–310.
  • Morrissey, J. P., and D. Tollervey. 1995. Birth of the snoRNPs: the evolution of RNase MRP and the eukaryotic pre-rRNA-processing. Trends Biochem. Sci. 20:78–82.
  • Mueller, P. R., and B. Wold. 1989. In vivo footprinting of a muscle specific enhancer by ligation mediated PCR. Science 246:780–786.
  • Nuell, M. J., D. A. Stewart, L. Walker, V. Friedman, C. M. Wood, G. A. Owens, J. R. Smith, E. D. Schneider, R. Dell'Orco, C. K. Lumpkin, D. B. Danner, and J. K. McClung. 1991. Prohibitin, an evolutionarily conserved intracellular protein that blocks DNA synthesis in normal fibroblasts and HeLa cells. Mol. Cell. Biol. 11:1372–1381.
  • Parisi, M. A., and D. A. Clayton. 1991. Similarity of human mitochondrial transcription factor-1 to high mobility group proteins. Science 252:965–969.
  • Park, J. S., J. D. Luethy, M. G. Wang, J. Fargnoli, A. J. J. Fornace, O. W. McBride, and N. J. Holbrook. 1992. Isolation, characterization and chromosomal localization of the human GADD153 gene. Gene 116:259–267.
  • Pearson, B. E., H. P. Nasheuer, and T. S. Wang. 1991. Human DNA polymerase α gene: sequences controlling expression in cycling and serum-stimulated cells. Mol. Cell. Biol. 11:2081–2095.
  • Perucho, M., H. V. Molgaard, A. Shevack, T. Pataryas, and A. Ruiz-Carrillo. 1979. An improved method for preparation of undegraded polysomes and active mRNA from immature chicken erythrocytes. Anal. Biochem. 98:464–471.
  • Pfeifer, S. M., E. E. Furth, T. Ohba, Y. J. Chang, H. Rennert, N. Sakuragi, J. T. Billheimer, and J. F. Strauss. 1993. Sterol carrier protein 2: a role in steroid hormone synthesis? J. Steroid Biochem. Mol. Biol. 47:167–172.
  • Piaggio, G., A. Farina, D. Perrotti, I. Manni, P. Fuschi, A. Sacchi, and C. Gaetano. 1995. Structure and growth-dependent regulation of the human cyclin B1 promoter. Exp. Cell Res. 216:396–402.
  • Prats, E., L. Cornudella, and A. Ruiz-Carrillo. 1989. Nucleotide sequence of a cDNA for f0, a histone to protamine transition protein from sea cucumber spermatozoa. Nucleic Acids Res. 17:10097.
  • Reason, A. J., H. R. Morris, M. Panico, R. Marais, R. H. Treisman, R. S. Haltiwanger, G. W. Hart, W. G. Kelly, and A. Dell. 1992. Localization of O-GlcNAc modification on the serum response transcription factor. J. Biol. Chem. 267:16911–16921.
  • Renaud, J., and A. Ruiz-Carrillo. 1986. Fine analysis of the active h5 gene chromatin of chicken erythroid cells at different stages of differentiation. J. Mol. Biol. 189:217–226.
  • Rihs, H. P., D. A. Jans, H. Fan, and R. Peters. 1991. The rate of nuclear cytoplasmic protein transport is determined by the casein kinase-II site flanking the nuclear localization sequence of the SV40 T-antigen. EMBO J. 10:633–639.
  • Rohrer, D. K., R. Hartong, and W. H. Dillmann. 1991. Influence of thyroid hormone and retinoic acid on slow sarcoplasmic reticulum Ca21 ATPase and myosin heavy chain alpha gene expression in cardiac myocytes: delineation of cis-active DNA elements that confer responsiveness to thyroid hormone but not to retinoic acid. J. Biol. Chem. 266:8638–8646.
  • Rousseau, S., M. Asselin, J. Renaud, and A. Ruiz-Carrillo. 1993. Transcription of the histone h5 gene is regulated by three differentiation-specific enhancers. Mol. Cell. Biol. 13:4904–4917.
  • Rousseau, S., J. Renaud, and A. Ruiz-Carrillo. 1989. Basal expression of the histone h5 gene is controlled by positive and negative cis-acting sequence. Nucleic Acids Res. 17:7495–7511.
  • Rozalski, M., L. Lafleur, and A. Ruiz-Carrillo. 1985. Monoclonal antibodies against histone H5: epitope mapping and binding to chromatin. J. Biol. Chem. 260:14379–14385.
  • Ruiz-Carrillo, A., M. Affolter, and J. Renaud. 1983. Genomic organization of the genes coding for the six main histones of the chicken: complete sequence of the h5 gene. J. Mol. Biol. 170:843–859.
  • Rupp, R. A. W., U. Kruse, G. Multhaup, U. Gobel, K. Beyreuther, and A. E. Sippel. 1990. Chicken NFI/GGCA proteins are encoded by at least three independent genes: NFI-A, NFI-B and NFI-C with homologues in mammalian genomes. Nucleic Acids Res. 18:2607–2616.
  • Sauerwald, A., C. Hoesche, R. Oschwald, and M. W. Kilimann. 1990. The 59-flanking region of the synapsin I gene: a G1C-rich, TATA- and CAAT-less, phylogenetically conserved sequence with cell type-specific promoter function. J. Biol. Chem. 265:14932–14937.
  • Schneider, C., R. A. Newman, D. R. Sutherland, U. Asser, and M. F. Greaves. 1982. A one-step purification of membrane proteins using a high efficiency immunomatrix. J. Biol. Chem. 257:10766–10769.
  • Studier, F. W., and B. A. Moffatt. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189:113–130.
  • Sullivan, P. M., Y. M. Wang, and D. R. Joseph. 1993. Identification of an alternate promoter in the rat androgen-binding protein/sex hormone-binding globulin gene that regulates synthesis of a messenger RNA encoding a protein with altered function. Mol. Endocrinol. 7:702–715.
  • Sun, J. M., Z. Ali, R. Lurz, and A. Ruiz-Carrillo. 1990. Replacement of histone H1 by H5 in vivo does not change the nucleosome repeat length of chromatin but increases its stability. EMBO J. 9:1651–1658.
  • Sun, J. M., R. Wiaderkiewicz, and A. Ruiz-Carrillo. 1989. Histone H5 in the control of DNA synthesis and cell proliferation. Science 245:68–71.
  • Sun, X. H., and D. Baltimore. 1991. An inhibitory domain of E12 transcription factor prevents DNA binding in E12 homodimers but not in E12 het-erodimers. Cell 64:459–470.
  • Tamura, T., F. Osaka, Y. Kawamura, T. Higuti, N. Ishida, H. G. Nothwang, C. Tsurumi, K. Tanaka, and A. Ichihara. 1994. Isolation and characterization of α-type HC5 subunit genes of human proteasomes. J. Mol. Biol. 244:117–124.
  • T'Ang, A., K.-J. Wu, T. Hashimoto, W.-Y. Liu, R. Takahashi, X.-H. Shi, K. Mihara, F.-H. Zhang, Y. Y. Chen, C. Du, J. Qian, Y.-G. Lin, A. L. Murphree, W.-R. Qiu, T. Thompson, W. F. Benedict, and Y.-K. Fung. 1989. Genomic organization of the human retinoblastoma gene. Oncogene 4:401–407.
  • Tasanen, K., J. Oikarinen, K. I. Kivirikko, and T. Pihlajaniemi. 1992. Promoter of the gene for the multifunctional protein disulphide isomerase polypeptide: functional significance of the six CCAAT boxes and other promoter elements. J. Biol. Chem. 267:11513–11519.
  • Terao, M., Y. Watanabe, M. Mishina, and S. Numa. 1983. Sequence requirement for transcription in vivo of the human preproenkefalin A gene. EMBO J. 2:2223–2228.
  • Virbasius, C. M. A., J. V. Virbasius, and R. C. Scarpulla. 1993. NRF-1, an activator involved in nuclear-mitochondrial interactions, utilizes a new DNA-binding domain conserved in a family of developmental regulators. Genes Dev. 7:2431–2445.
  • Wagner, M., and R. P. Perry. 1985. Characterization of the multigene family encoding the mouse S16 ribosomal protein: strategy for distinguishing an expressed gene from its processed pseudogene counterparts by an analysis of total genomic DNA. Mol. Cell. Biol. 5:3560–3576.
  • Weber, C. A., E. P. Salazar, S. A. Stewart, and L. H. Thompson. 1990. ERCC2: cDNA cloning and molecular characterization of a human nucleotide excision repair gene with high homology to yeast RAD3. EMBO J. 9: 1437–1447.
  • Wells, R. D., S. Amirhaeri, J. A. Blaho, D. A. Collier, A. Dohrman, J. A. Griffin, J. C. Hanvey, A. Jaworski, J. E. Larson, A. Rahmouni, M. Rajagopalan, and W. Shimizu. 1990. Z DNA and triplexes, p. 79–91. In F. Richardson, and R. Lehman (ed.), Molecular mechanisms in DNA replication and recombination. Wiley-Liss, New York.
  • Woodward, M. P., W. W. Young, and R. A. Bloodgood. 1985. Detection of monoclonal antibodies specific for carbohydrate epitopes using periodate oxidation. J. Immunol. Methods 78:143–153.
  • Yamamoto, M., L. J. Ko, M. W. Leonard, H. Beug, S. H. Orkin, and J. D. Engel. 1990. Activity and tissue-specific expression of the transcription factor NF-E1 multigene family. Genes Dev. 4:1650–1662.
  • Zimmermann, A. G., J. Spychala, and B. S. Mitchell. 1995. Characterization of the human inosine-59-monophosphate dehydrogenase type II gene. J. Biol. Chem. 270:6808–6814.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.