1
Views
30
CrossRef citations to date
0
Altmetric
Research Article

An AU-Rich Element in the 3′ Untranslated Region of the Spinach Chloroplast petD Gene Participates in Sequence-Specific RNA-Protein Complex Formation

, , , , &
Pages 2010-2018 | Received 17 Nov 1994, Accepted 12 Jan 1995, Published online: 30 Mar 2023

REFERENCES

  • Atwater, J. A., R. Wisdom, and I. M. Verma. 1990. Regulated messenger RNA stability. Annu. Rev. Genet. 24:519–541.
  • Bickel, M., Y. Iwai, D. H. Pluznik, and R. B. Cohen. 1992. Binding of sequence-specific proteins to the adenosine- plus uridine-rich sequences of the murine granulocyte/macrophage colony-stimulating factor mRNA. Proc. Natl. Acad. Sci. USA 89:10001–10005.
  • Bohjanen, P. R., B. Petryniak, C. H. June, C. B. Thompson, and T. Lindsten. 1991. An inducible cytoplasmic factor (AU-B) binds selectively to AUUUA multimers in the 39 untranslated region of lymphokine mRNA. Mol. Cell. Biol. 11:3288–3295.
  • Bohjanen, P. R., B. Petryniak, C. H. June, C. B. Thompson, and T. Lindsten. 1992. AU RNA-binding factors differ in their binding specificities and affinities. J. Biol. Chem. 267:6302–6309.
  • Brawerman, G. 1989. mRNA decay: finding the right targets. Cell 57:9–10.
  • Brewer, G. 1991. An adenine plus uridine rich element RNA-binding factor regulates c-myc mRNA stability in vitro. Mol. Cell. Biol. 11:2460–2466.
  • Chen, H. C., and D. B. Stern. 1991. Specific binding of chloroplast proteins in vitro to the 39 untranslated region of spinach chloroplast petD mRNA. Mol. Cell. Biol. 11:4380–4388.
  • Chen, L., and E. M. Orozco, Jr. 1988. Recognition of prokaryotic transcription terminators by spinach chloroplast RNA polymerase. Nucleic Acids Res. 16:8411–8431.
  • Cotten, M., O. Gick, A. Vasserot, G. Schaffner, and M. L. Birnstiel. 1988. Specific contacts between mammalian U7 small nuclear RNA and histone precursor RNA are indispensable for the in vitro 39 RNA processing reaction. EMBO J. 7:801–808.
  • Danon, A., and S. P. Y. Mayfield. 1991. Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins. EMBO J. 10:3993–4002.
  • Deng, X. W., and W. Gruissem. 1987. Control of plastid gene expression during development: the limited role of transcriptional regulation. Cell 49: 379–387.
  • Fukami-Kobayashi, K., S. Tomoda, and M. Go. 1993. Evolutionary clustering and functional similarity of RNA-binding proteins. FEBS Lett. 335:289–293.
  • Georgiev, O., and M. L. Birnstiel. 1985. The conserved CAAGAAAGA spacer sequence is an essential element for the formation of 39 termini of the sea urchin H3 histone mRNA by RNA processing. EMBO J. 4:481–489.
  • Grafi, G., and G. Galili. 1993. Induction of cytoplasmic factors that bind to the 39 AU-rich region of human interferon β mRNA during early development of Xenopus laevis. FEBS Lett. 336:403–407.
  • Gruissem, W., B. M. Greenberg, G. Zurawski, and R. B. Hallick. 1986. Chloroplast gene expression and promoter identification in chloroplast extracts. Methods Enzymol. 118:253–270.
  • Hamilton, B. J., E. Nagy, J. S. Malter, B. A. Arrick, and W. F. C. Rigby. 1993. Association of heterogeneous nuclear ribonucleoprotein A1 and C proteins with reiterated AUUUA sequences. J. Biol. Chem. 268:8881–8887.
  • Herrmann, R. G., P. Westhoff, J. Alt, J. Tittgen, and N. Nelson. 1985. Thylakoid membrane proteins and their genes, p. 233–256. In L. van Vloten-Doting, G. S. P. Groot, and T. C. Hall (ed.), Molecular form and function of the plant genome. Plenum Press, New York.
  • Jackson, R. J. 1993. Cytoplasmic regulation of mRNA function: the importance of the 39 untranslated region. Cell 74:9–14.
  • Kim, M., D. A. Christopher, and J. E. Mullet. 1993. Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development. Plant Mol. Biol. 22:447–463.
  • Klausner, R. D., T. A. Rouault, and J. B. Harford. 1993. Regulating the fate of mRNA: the control of cellular iron metabolism. Cell 72:19–28.
  • Lamond, A. I. 1993. The spliceosome. Bioessays 15:595–603.
  • Malter, J. S. 1989. Identification of an AUUUA-specific messenger RNA binding protein. Science 246:664–666.
  • Marzluff, W. F. 1992. Histone 39 ends: essential and regulatory functions. Gene Expr. 2:93–97.
  • McLaren, R. S., S. F. Newbury, G. S. Dance, H. C. Causton, and C. F. Higgins. 1991. mRNA degradation by processive 39-59 exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivo. J. Mol. Biol. 221:81–95.
  • Mowry, K. L., and J. A. Steitz. 1987. Identification of the human U7 snRNP as one of several factors involved in the 39 end maturation of histone premes-senger RNA's. Science 238:1682–1687.
  • Nickelsen, J., and G. Link. 1991. RNA-protein interactions at transcript 39 ends and evidence for trnK-psbA cotranscription in mustard chloroplasts. Mol. Gen. Genet. 228:89–96.
  • Nickelsen, J., and G. Link. 1993. The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 39 end formation in vitro. Plant J. 3:537–544.
  • Nickelsen, J., J. Van-Dillewijn, M. Rahire, and J. D. Rochaix. 1994. Determinants for stability of the chloroplast psbD RNA are located with in its short leader region in Chlamydomonas reinhardtii. EMBO J. 13:3182–3191.
  • Ohme-Takagi, M., C. B. Taylor, T. C. Newman, and P. J. Green. 1993. The effect of sequences with high AU content on mRNA stability in tobacco. Proc. Natl. Acad. Sci. USA 90:11811–11815.
  • Sachs, A. B. 1993. Messenger RNA degradation in eukaryotes. Cell 74:413–421.
  • Scharl, E. C., and J. A. Steitz. 1994. The site of 39 end formation of histone messenger RNA is a fixed distance from the downstream element recognized by the U7 snRNP. EMBO J. 13:2432–2440.
  • Schuster, G., and W. Gruissem. 1991. Chloroplast mRNA 39 end processing requires a nuclear-encoded RNA-binding protein. EMBO J. 10:1493–1502.
  • Sharp, P. A. 1994. Split genes and RNA splicing. Cell 77:805–815.
  • Shaw, G., and R. Kamen. 1986. A conserved adenine-uridine sequence from the 39 untranslated region of granulocyte-monocyte colony stimulating factor messenger RNA mediates selective messenger RNA degradation. Cell 46: 659–668.
  • Smith, K. C. 1969. Photochemical addition of amino acids to 14C-uracil. Biochem. Biophys. Res. Commun. 34:354–357.
  • Stern, D. B., and W. Gruissem. 1987. Control of plastid gene expression: 39 inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription. Cell 51:1145–1157.
  • Stern, D. B., and W. Gruissem. 1989. Chloroplast mRNA 39 end maturation is biochemically distinct from prokaryotic mRNA processing. Plant Mol. Biol. 13:615–625.
  • Stern, D. B., H. Jones, and W. Gruissem. 1989. Function of plastid mRNA 39 inverted repeats: RNA stabilization and gene-specific protein binding. J. Biol. Chem. 264:18742–18750.
  • Stern, D. B., and K. L. Kindle. 1993. 39 end maturation of the Chlamydo-monas reinhardtii chloroplast atpB mRNA is a two-step process. Mol. Cell. Biol. 13:2277–2285.
  • Stern, D. B., E. R. Radwanski, and K. L. Kindle. 1991. A 39 stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo. Plant Cell 3:285–297.
  • Svab, Z., P. Hajdukiewicz, and P. Maliga. 1990. Stable transformation of plastids in higher plants. Proc. Natl. Acad. Sci. USA 87:8526–8530.
  • Svab, Z., and P. Maliga. 1993. High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proc. Natl. Acad. Sci. USA 90:913–917.
  • Wahle, W., and W. Keller. 1992. The biochemistry of 39-end cleavage and polyadenylation of messenger RNA precursors. Annu. Rev. Biochem. 61: 419–440.
  • Wickens, M. 1993. Springtime in the desert. Nature (London) 363:305–306.
  • You, Y., C. Y. A. Chen, and A. B. Shyu. 1992. U-rich sequence-binding proteins (URBPs) interacting with a 20-nucleotide U-rich sequence in the 39 untranslated region of c-fos mRNA may be involved in the first step of c-fos mRNA degradation. Mol. Cell. Biol. 12:2931–2940.
  • Zerges, W., and J. D. Rochaix. 1994. The 59 leader of a chloroplast mRNA mediates the translational requirements for two nucleus-encoded functions in Chlamydomonas reinhardtii. Mol. Cell. Biol. 14:5268–5277.
  • Zurawski, G., H. J. Bohnert, P. R. Whitfeld, and W. Bottomley. 1982. Nucleotide sequence of the gene for the Mr 32,000 thylakoid membrane protein from Spinacia oleracea and Nicotiana debneyi predicts a totally conserved primary translation product of Mr 38,950. Proc. Natl. Acad. Sci. USA 79: 7699–7703.
  • Zurawski, G., B. Perrot, W. Bottomley, and P. R. Whitfeld. 1981. The structure of the gene for the large subunit of ribulose 1,5-bisphosphate carboxy-lase from spinach chloroplast DNA. Nucleic Acids Res. 9:3251–3270.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.