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Research Article

Genetic Evidence for Interaction between Cbp1 and Specific Nucleotides in the 5′ Untranslated Region of Mitochondrial Cytochrome b mRNA in Saccharomyces cerevisiae

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Pages 6203-6211 | Received 09 May 1997, Accepted 11 Aug 1997, Published online: 29 Mar 2023

REFERENCES

  • Alexander, N. J., P. S. Perlman, D. K. Hanson, and H. R. Mahler. 1980. Mosaic organization of a mitochondrial gene: evidence from double mutants in the cytochrome b region of Saccharomyces cerevisiae. Cell 20:199–206.
  • Bairoch, A. 1991. PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Res. 19(Suppl.):2241–2245.
  • Bonitz, S. G., G. Coruzzi, B. E. Thalenfeld, A. Tzagoloff, and G. Macino. 1980. Assembly of the mitochondrial membrane system. Physical map of the Oxi3 locus of yeast mitochondrial DNA. J. Biol. Chem. 255:11922–11926.
  • Bonitz, S. G., G. Homison, B. E. Thalenfeld, F. G. Nobrega, and A. Tzagoloff. 1982. Assembly of the mitochondrial membrane system: processing of the apocytochrome b precursor RNAs in Saccharomyces cerevisiae D273-10B. J. Biol. Chem. 257:6268–6274.
  • Bousquet, I., G. Dujardin, R. O. Poyton, and P. P. Slonimski. 1990. Two group I mitochondrial introns in the cob-box and coxI genes require the same MRS1/PET157 nuclear gene product for splicing. Curr. Genet. 18:117–124.
  • Caponigro, G., D. Muhlrad, and R. Parker. 1993. A small segment of the MATa1 transcript promotes mRNA decay in Saccharomyces cerevisiae: a stimulatory role for rare codons. Mol. Cell. Biol. 13:5141–5148.
  • Chen, J.-Y., and N. C. Martin. 1988. Biosynthesis of tRNA in yeast mitochondria. An endonuclease is responsible for the 3′-processing of tRNA precursors. J. Biol. Chem. 263:13677–13682.
  • Chen, W., and C. L. Dieckmann. 1994. Cbp1p is required for message stability following 59-processing of COB mRNA. J. Biol. Chem. 269:16574–16578.
  • Chen, W., and C. L. Dieckmann. Unpublished data.
  • Cohen, S. N., A. C. Y. Chang, and L. Hsu. 1972. Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA. Proc. Natl. Acad. Sci. USA 69:2110–2114.
  • deZamaroczy, M., and G. Bernardi. 1986. The primary structure of the mitochondrial genome of Saccharomyces cerevisiae—a review. Gene 47:155–177.
  • Dieckmann, C. L., T. J. Koerner, and A. Tzagoloff. 1984. Assembly of the mitochondrial membrane system. CBP1, a yeast nuclear gene involved in 59 end processing of cytochrome b pre-mRNA. J. Biol. Chem. 259:4722–4731.
  • Dreyfuss, G., M. J. Matunis, S. Pinñol-Roma, and C. G. Burd. 1993. hnRNP proteins and the biogenesis of mRNA. Chapter IV: the structure of hnRNP proteins. Annu. Rev. Biochem. 62:300–305.
  • Freier, S. M., R. Kierzek, J. A. Jaeger, N. Sugimoto, M. H. Caruthers, T. Neilson, and D. H. Turner. 1986. Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl. Acad. Sci. USA 83:9373–9377.
  • Geitz, R. D., and R. H. Schiestl. 1991. Application of high efficiency lithium acetate transformation of intact yeast cells using single-stranded nucleic acids as carrier. Yeast 7:253–263.
  • Hill, J. E., A. M. Myers, T. J. Koerner, and A. Tzagoloff. 1986. Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2:163–167.
  • Holbrook, S. R., C. Cheong, I. Tinoco, and S. H. Kim. 1991. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature 353:579–581.
  • Hollingsworth, M. J., and N. C. Martin. 1986. RNase P activity in the mitochondria of Saccharomyces cerevisiae depends on both mitochondrion and nucleus-encoded components. Mol. Cell. Biol. 6:1058–1064.
  • Jones, M. H., and C. Guthrie. 1990. Unexpected flexibility in an evolutionarily conserved protein-RNA interaction: genetic analysis of the Sm binding site. EMBO J. 9:2555–2561.
  • Koll, H., C. Schmidt, G. Wiesenberger, and C. Schmelzer. 1987. Three nuclear genes suppress a yeast mitochondrial splice defect when present in high copy number. Curr. Genet. 12:503–509.
  • Kreike, J., M. Schulze, F. Ahne, and B. F. Lang. 1987. A yeast nuclear gene, MRS1, involved in mitochondrial RNA splicing: nucleotide sequence and mutational analysis of two overlapping open reading frames on opposite strands. EMBO J. 6:2123–2129.
  • Kreike, J., M. Schulze, T. Pillar, A. Körte, and G. Rödel. 1986. Cloning of a nuclear gene MRS1 involved in the excision of a single group I intron (bI3) from the mitochondrial COB transcript in S. cerevisiae. Curr. Genet. 11:185–191.
  • Kunkel, T. A. 1985. Rapid and efficient site-specific mutagenesis without phenotype selection. Proc. Natl. Acad. Sci. USA 82:488–492.
  • Labouesse, M., C. J. Herbert, G. Dujardin, and P. P. Slonimski. 1987. Three suppressor mutations which cure a mitochondrial RNA maturase deficiency occur at the same codon in the open reading frame of the nuclear NAM2 gene. EMBO J. 6:713–721.
  • Le, S. Y., N. Pattabiraman, and J. V. Maizel. 1994. RNA tertiary structure of the HIV RRE domain II containing non-Watson-Crick base pairs GG and GA: molecular modeling studies. Nucleic Acids Res. 22:3966–3976.
  • Li, G. Y., C. J. Herbert, M. Labouesse, and P. P. Slonimski. 1992. In vitro mutagenesis of the mitochondrial leucyl-tRNA synthetase of S. cerevisiae reveals residues critical for its in vivo activities. Curr. Genet. 22:69–74.
  • Mayer, S. A., and C. L. Dieckmann. 1989. The yeast CBP1 gene produces two differentially regulated transcripts by alternative 3′-end formation. Mol. Cell. Biol. 9:4161–4169.
  • McGraw, P., and A. Tzagoloff. 1983. Assembly of the mitochondrial membrane system. Characterization of a yeast nuclear gene involved in the processing of the cytochrome b pre-mRNA. J. Biol. Chem. 258:9459–9468.
  • Michaelis, U., A. Körte, and G. Rödel. 1991. Association of cytochrome b translational activator proteins with the mitochondrial membrane: implications for cytochrome b expression in yeast. Mol. Gen. Genet. 230:177–185.
  • Min, J., and H. P. Zassenhaus. 1993. Identification of a protein complex that binds to a dodecamer sequence found at the 3′ ends of yeast mitochondrial mRNAs. Mol. Cell. Biol. 13:4167–4173.
  • Mittelmeier, T. M., and C. L. Dieckmann. 1990. CBP1 function is required for stability of a hybrid cob-oli1 transcript in yeast mitochondria. Curr. Genet. 18:421–428.
  • Mittelmeier, T. M., and C. L. Dieckmann. 1993. In vivo analysis of sequences necessary for CBP1-dependent accumulation of cytochrome b transcripts in yeast mitochondria. Mol. Cell. Biol. 13:4203–4213.
  • Mittelmeier, T. M., and C. L. Dieckmann. 1995. In vivo analysis of sequences required for translation of cytochrome b transcripts in yeast mitochondria. Mol. Cell. Biol. 15:780–789.
  • Muroff, I., and A. Tzagoloff. 1990. CBP7 codes for a co-factor required in conjunction with a mitochondrial maturase for splicing of its cognate intervening sequence. EMBO J. 9:2765–2773.
  • Rödel, G. 1986. Two yeast nuclear genes, CBS1 and CBS2, are required for translation of mitochondrial transcripts bearing the 59-untranslated COB leader. Curr. Genet. 11:41–45.
  • Rödel, G., A. Körte, and F. Kaudewitz. 1985. Mitochondrial suppression of a yeast nuclear mutation which affects the translation of the mitochondrial apocytochrome b transcript. Curr. Genet. 9:641–648.
  • Rose, M. D., F. Winston, and P. Hieter. 1990. Methods in yeast genetics: a laboratory course manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
  • Sandrock, T. M., J. L. O’Dell, and A. E. M. Adams. Allele-specific suppression can occur by forming new protein-protein interactions. Genetics, in press.
  • Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27.
  • Staples, R. R., and C. L. Dieckmann. 1993. Generation of temperaturesensitive cbp1 strains of Saccharomyces cerevisiae by PCR mutagenesis and in vivo recombination: characteristics of the mutant strains imply that CBP1 is involved in stabilization and processing of cytochrome b pre-mRNA. Genetics 135:981–991.
  • Tzagoloff, A., F. Foury, and A. Akai. 1976. Assembly of the mitochondrial membrane system: cytoplasmic mutants of Saccharomyces cerevisiae with lesions in enzymes of the respiratory chain and in the mitochondrial ATPase. Mol. Gen. Genet. 149:33–42.
  • Weeks, K. M., and T. R. Cech. 1996. Assembly of a ribonucleoprotein catalyst by tertiary structure capture. Science 271:345–348.
  • Wiesenberger, G., M. Waldherr, and R. J. Schweyen. 1992. The nuclear gene MRS2 is essential for the excision of group II introns from yeast mitochondrial transcripts in vivo. J. Biol. Chem. 267:6963–6969.
  • Zamore, P. D., J. G. Patton, and M. R. Green. 1992. Cloning and domain structure of the mammalian splicing factor U2AF. Nature 355:609–614.
  • Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48–52.
  • Zuker, M. 1994. Predicting optimal and suboptimal secondary structure for RNA. Methods Mol. Biol. 25:267–294.

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