Premature 3′-End Formation of CBP1 mRNA Results in the Downregulation of Cytochrome b mRNA during the Induction of Respiration in Saccharomyces cerevisiae

REFERENCES

• Baim, S. B., D. F. Pietras, D. C. Eustice, and F. Sherman. 1985. A mutation allowing an mRNA secondary structure diminishes translation of Saccharo-myces cerevisiae iso-1-cytochrome c. Mol. Cell. Biol. 5:1839–1846.
   PubMedGoogle Scholar
• Ballinger, D. G., and M. L. Pardue. 1983. The control of protein synthesis during heat shock in Drosophila cells involves altered polypeptide elongation rates. Cell 33:103–113.
   PubMed Web of Science ®Google Scholar
• Bolivar, F., R. L. Rodriguez, P. J. Greene, M. C. Betlach, H. L. Heyneker, H. W. Boyer, J. H. Crosa, and S. Falkow. 1977. Construction and characterization of new cloning vehicles II. A multi-purpose cloning system. Gene 2:95–113.
   PubMed Web of Science ®Google Scholar
• Buckholz, R. G., and T. G. Cooper. 1983. Oxalurate induction of multiple URA3 transcripts in Saccharomyces cerevisiae. Mol. Cell. Biol. 3:1889–1897.
   PubMedGoogle Scholar
• Chen, J.-Y., and N. C. Martin. 1988. Biosynthesis of tRNA in yeast mitochondria. An endonuclease is responsible for the 3′-processing of tRNA precursors. J. Biol. Chem. 263:13677–13682.
   PubMedGoogle Scholar
• Chen, W., and C. L. Dieckmann. 1994. Cbp1p is required for message stability following 5′-processing of COB mRNA. J. Biol. Chem. 269:16574–16578.
   PubMedGoogle Scholar
• Christianson, T., J. C. Edwards, D. M. Mueller, and M. Rabinowitz. 1983. Identification of a single transcriptional initiation site for the glutamic tRNA and COB genes in yeast mitochondria. Proc. Natl. Acad. Sci. USA 80:5564–5568.
   PubMedGoogle Scholar
• Craigen, W. J., and C. T. Caskey. 1987. The function, structure and regulation of E. coli peptide chain release factors. Biochimie 69:1031–1041.
   PubMedGoogle Scholar
• Crivellone, M. D., M. A. Wu, and A. Tzagoloff. 1988. Assembly of the mitochondrial membrane system. Analysis of structural mutants of the yeast coenzyme QH2-cytochrome c reductase complex. J. Biol. Chem. 263:14323–14333.
   PubMedGoogle Scholar
• Decker, C. J., and R. Parker. 1993. A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation. Genes Dev. 7:1632–1643.
   PubMed Web of Science ®Google Scholar
• Dieckmann, C. L., and B. Gandy. 1987. Preferential recombination between GC clusters in yeast mitochondrial DNA. EMBO J. 6:4197–4203.
   PubMedGoogle Scholar
• Dieckmann, C. L., T. J. Koerner, and A. Tzagoloff. 1984. Assembly of the mitochondrial membrane system. CBP1, a yeast nuclear gene involved in 5′ end processing of cytochrome b pre-mRNA. J. Biol. Chem. 259:4722–4731.
   PubMedGoogle Scholar
• Dieckmann, C. L., and R. R. Staples. 1994. Regulationofmitochondrialgene expression in Saccharomyces cerevisiae, p. 145–181. In K. W. Jeon and J. W. Jarvik (ed.), International review of cytology. Academic Press, Inc. San Diego, Calif.
   Google Scholar
• Elble, R., and B.-K. Tye. 1991. Both activation and repression of a-mating-type-specific genes in yeast requires transcription factor Mcm1. Proc. Natl. Acad. Sci. USA 88:10966–10970.
   PubMedGoogle Scholar
• Finnegan, P. M., M. J. Payne, E. Keramidaris, and H. B. Lukins. 1991. Characterization of a yeast nuclear gene, AEP2, required for accumulation of mitochondrial mRNA encoding subunit 9 of the ATP synthase. Curr. Genet. 20:53–61.
   PubMedGoogle Scholar
• Gietz, R. D., and R. H. Schiestl. 1991. Applications of high efficiency lithium acetate transformation of intact yeast cells using single-stranded nucleic acids as carrier. Yeast 7:253–263.
   PubMed Web of Science ®Google Scholar
• Guo, Z., and F. Sherman. 1996. 3′ -end-forming signals of yeast mRNA. Trends. Biochem. Sci. 21:477–481.
   PubMed Web of Science ®Google Scholar
• Hanahan, D. 1985. Techniques for transformation of E. coli, p. 109–135. In D. M. Glover (ed.), DNA cloning: a practical approach, vol. I. IRL Press, Oxford, England.
   Google Scholar
• Hann, B. C., and P. Walter. 1991. The signal recognition particle in S. cerevisiae. Cell 67:131–144.
   PubMedGoogle Scholar
• Hatfield, L., C. A. Beelman, A. Stevens, and R. Parker. 1996. Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae. Mol. Cell. Biol. 16:5830–5838.
   PubMedGoogle Scholar
• Hollingsworth, M. J., and N. C. Martin. 1986. RNase P activity in the mitochondria of Saccharomyces cerevisiae depends on both mitochondrion and nucleus-encoded components. Mol. Cell. Biol. 6:1058–1064.
   PubMedGoogle Scholar
• Homison, G. 1984. Ph.D. thesis. Columbia University, New York, N.Y.
   Google Scholar
• Johnston, M., and M. Carlson. 1992. Regulation of carbon and phosphate utilization, p. 193–281. In E. W. Jones, J. R. Pringle, and J. R. Broach (ed.), The molecular and cellular biology of the yeast Saccharomyces: gene expression. Cold Spring Harbor Laboratory Press, Plainview, N.Y.
   Google Scholar
• Keller, W. 1995. No end yet to messenger RNA 3′ processing! Cell 81:829–832.
   PubMed Web of Science ®Google Scholar
• Köhrer, K., and H. Domdey. 1991. Preparation of high molecular weight RNA. Methods Enzymol. 194:398–405.
   PubMed Web of Science ®Google Scholar
• Kukuruzinska, M. A., and P. W. Robbins. 1987. Protein glycosylation in yeast: transcript heterogeneity of the ALG7 gene. Proc. Natl. Acad. Sci. USA 84:2145–2149.
   PubMedGoogle Scholar
• Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685.
   PubMed Web of Science ®Google Scholar
• Liu, Y., and C. L. Dieckmann. 1989. Overproduction of yeast viruslike particles by strains deficient in a mitochondrial nuclease. Mol. Cell. Biol. 9:3323–3331.
   PubMedGoogle Scholar
• Mann, K. P., E. A. Weiss, and J. R. Nevins. 1993. Alternative poly(A) site utilization during adenovirus infection coincides with a decrease in the activity of a poly(A) site processing factor. Mol. Cell. Biol. 13:2411–2419.
   PubMedGoogle Scholar
• Martin, N. C., D. L. Miller, K. Underbrink, and X. Ming. 1985. Structure of a precursor to the yeast mitochondrial tRNAfMet: implications for the function of the tRNA synthesis locus. J. Biol. Chem. 260:1479–1483.
   PubMedGoogle Scholar
• Mayer, S. A. 1990. Ph.D. thesis. University of Arizona, Tucson, Ariz.
   Google Scholar
• Mayer, S. A., and C. L. Dieckmann. 1989. The yeast CBP1 gene produces two differentiallyregulated transcripts byalternative 3′-end formation. Mol. Cell. Biol. 9:4161–4169.
   PubMedGoogle Scholar
• Mayer, S. A., and C. L. Dieckmann. 1991. Yeast CBP1 mRNA 3′ end formation is regulated during the induction of mitochondrial function. Mol. Cell. Biol. 11:813–821.
   PubMedGoogle Scholar
• Minvielle-Sebastia, L., B. Winsor, N. Bonneaud, and F. Lacroute. 1991. Mutations in the yeast RNA14 and RNA15 genes result in an abnormal mRNA decay rate: sequence analysis reveals an RNA-binding domain in the RNA15 protein. Mol. Cell. Biol. 11:3075–3087.
   PubMedGoogle Scholar
• Mittelmeier, T. M., and C. L. Dieckmann. 1990. CBP1 function is required for stability of a hybrid cob-oli1 transcript in yeast mitochondria. Curr. Genet. 18:421–428.
   PubMedGoogle Scholar
• Mittelmeier, T. M., and C. L. Dieckmann. 1993. In vivo analysis of sequences necessary for CBP1-dependent accumulation of cytochrome b transcripts in yeast mitochondria. Mol. Cell. Biol. 13:4203–4213.
   PubMedGoogle Scholar
• Mittelmeier, T. M., and C. L. Dieckmann. 1995. Invivo analysis of sequences required for translation of cytochrome b transcripts in yeast mitochondria. Mol. Cell. Biol. 15:780–789.
   PubMedGoogle Scholar
• Mueller, D. M., and G. S. Getz. 1986. Steady state analysis of mitochondrial RNA after growth of yeast Saccharomyces cerevisiae under catabolite repression and derepression. J. Biol. Chem. 261:11816–11822.
   PubMedGoogle Scholar
• Mueller, D. M., and G. S. Getz. 1986. Transcriptional regulation of the mitochondrial genome of yeast Saccharomyces cerevisiae. J. Biol. Chem. 261:11756–11764.
   PubMedGoogle Scholar
• Myers, A. M., M. D. Crivellone, and A. Tzagoloff. 1987. Assembly of the mitochondrial membrane system. MRP1 and MRP2, two yeast nuclear genes coding for mitochondrial ribosomal proteins. J. Biol. Chem. 262:3388–3397.
   PubMedGoogle Scholar
• Nakai, T., T. Yasuhara, Y. Fujiki, and A. Ohashi. 1995. Multiple genes, including a member of the AAA family, are essential for degradation of unassembled subunit 2 of cytochrome c oxidase in yeast mitochondria. Mol. Cell. Biol. 15:4441–4452.
   PubMedGoogle Scholar
• Nonet, M., C. Scafe, J. Sexton, and R. Young. 1987. Eucaryotic RNA poly-merase conditional mutant that rapidly ceases mRNA synthesis. Mol. Cell. Biol. 7:1602–1611.
   PubMedGoogle Scholar
• Oba, T., Y. Andachi, A. Muto, and S. Osawa. 1991. CGG: an unassigned or nonsense codon in Mycoplasma capricolum. Proc. Natl. Acad. Sci. USA 88:921–925.
   PubMedGoogle Scholar
• Passmore, S., G. T. Maine, R. Elble, C. Christ, and B.-K. Tye. 1988. Sac-charomyces cerevisiae protein involved in plasmid maintenance is necessary for mating of MATa cells. J. Mol. Biol. 204:593–606.
   PubMedGoogle Scholar
• Pon, L., and G. Schatz. 1991. Biogenesis of yeast mitochondria, p. 333–406. In J. R. Broach, J. R. Pringle, and E. W. Jones (ed.), The molecular and cellular biology of the yeast Saccharomyces, vol. I. Genome dynamics, protein synthesis, and energetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Rose, M. D., F. Winston, and P. Hieter. 1990. Methods in yeast genetics: a laboratory course manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Sparks, K. A., and C. L. Dieckmann. Unpublished data.
   Google Scholar
• Staples, R. R., and C. L. Dieckmann. 1993. Generation of temperaturesensitive cbp1 strains of Saccharomyces cerevisiae by PCR mutagenesis and in vivo recombination: characteristics of the mutant strains imply that CBP1 is involved in stabilization and processing of cytochrome b pre-mRNA. Genetics 135:981–991.
   PubMedGoogle Scholar
• Staples, R. R., and C. L. Dieckmann. Unpublished data.
   Google Scholar
• Staples, R. R., and C. L. Dieckmann. 1994. Suppressor analysis of temperature-sensitive cbp1 strains of Saccharomyces cerevisiae: the product of the nuclear gene SOC1 affects mitochondrial cytochrome b mRNA post-tran-scriptionally. Genetics 138:565–575.
   PubMedGoogle Scholar
• St. John, T. P., and R. W. Davis. 1981. The organization and transcriptionof the galactose gene cluster of Saccharomyces. J. Mol. Biol. 152:285–315.
   PubMedGoogle Scholar
• Stone, E. M., M. J. Swanson, A. M. Romeo, J. B. Hicks, and R. Sternglanz. 1991. The SIR1 gene of Saccharomyces cerevisiae and its role as anextragenic suppressor of several mating-defective mutants. Mol. Cell. Biol. 11:2253–2262.
   PubMedGoogle Scholar
• Tanguay, R. L., and D. R. Gallie. 1996. Translational efficiency is regulated by the length of the 3′ untranslated region. Mol. Cell. Biol. 16:146–156.
   PubMedGoogle Scholar
• Tate, W. P., and C. M. Brown. 1992. Translational termination: “stop” for protein synthesis or “pause” for regulation of gene expression. Biochemistry 31:2443–2450.
   PubMedGoogle Scholar
• Tzagoloff, A., and C. L. Dieckmann. 1990. PET genes of Saccharomyces cerevisiae. Microbiol. Rev. 54:211–225.
   PubMedGoogle Scholar
• Ulery, T. L., S. H. Jang, and J. A. Jaehning. 1994. Glucose repressionofyeast mitochondrial transcription: kinetics of derepression and role of nuclear genes. Mol. Cell. Biol. 14:1160–1170.
   PubMed Web of Science ®Google Scholar
• Weber, E. R., and C. L. Dieckmann. 1990. Identification of the CBP1 polypeptide in mitochondrial extracts from Saccharomyces cerevisiae. J. Biol. Chem. 265:1594–1600.
   PubMedGoogle Scholar