18
Views
11
CrossRef citations to date
0
Altmetric
Transcriptional Regulation

Differential Expression of Individual Suppressor tRNATrp Gene Family Members In Vitro and In Vivo in the Nematode Caenorhabditis elegans

, , &
Pages 703-709 | Received 22 Jul 1997, Accepted 18 Nov 1997, Published online: 28 Mar 2023

REFERENCES

  • Brenner, S. 1974. The genetics of Caenorhabditis elegans. Genetics 77: 71–94.
  • Candelas, G. C., G. Arroyo, C. Carrasco, and R. Dompensciel 1990. Spider silkglands contain a tissue-specific alanine tRNA that accumulates in vitro in response to the stimulus for silk protein synthesis. Dev. Biol. 140: 215–220.
  • Capone, J. P., P. A. Sharp, and U. L. RajBhandary 1985. Amber, ochre and opal suppressor tRNA genes derived from a human serine tRNA gene. EMBO J. 4: 213–221.
  • Deng, W. P., and J. A. Nickoloff 1992. Site-directed mutagenesis of virtually any plasmid by eliminating a unique site. Anal. Biochem. 200: 81–88.
  • Dingermann, T., E. Amon-Bohm, W. Bertling, R. Marschalek, and K. Nerke 1988. A family of non-allelic tRNAGUUVal genes from the cellular slime mold Dictyostelium discoideum. Gene 73: 373–384.
  • Dingermann, T., and K. Nerke 1987. Primer extension analysis of tRNA gene transcripts synthesized in vitro and in vivo. Anal. Biochem. 162: 466–475.
  • Dixon, D. K., D. Jones, and E. P. M. Candido 1990. The differentially expressed 16kD heat shock genes of Caenorhabditis elegans exhibit differential changes in chromatin structure during heat shock. DNA Cell Biol. 9: 177–191.
  • Doerig, R. E., B. Suter, M. Gray, and E. Kubli 1988. Identification of an amber nonsense mutation in the rosy 516 gene by germline transformation of an amber suppressor tRNA gene. EMBO J. 7: 2579–2584.
  • Fire, A. 1986. Integrative transformation of Caenorhabditis elegans. EMBO J. 5: 2673–2680.
  • Fire, A., S. White Harrison, and D. Dixon 1990. A modular set of beta-galactosidase fusion vectors for studying gene expression in Caenorhabditis elegans. Gene 93: 189–198.
  • Fournier, A., R. Taneja, R. Gopalkrishnan, J.-C. Prudhomme, and K. P. Gopinathan 1993. Differential transcription of multiple copies of a silk worm gene encoding tRNAGly1. Gene 134: 183–190.
  • Geiduschek, E. P., and G. P. Tocchini-Valentini 1988. Transcription by RNA polymerase III. Annu. Rev. Biochem. 57: 873–904.
  • Hatfield, D. 1985. Suppression of termination codons in higher eukaryotes. Trends Biochem. Sci. 10: 201–204.
  • Henikoff, S. 1984. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28: 351–359.
  • Honda, B. M., R. H. Devlin, D. W. Nelson, and M. Khosla 1986. Transcription of class III genes in cell-free extracts from the nematode Caenorhabditis elegans. Nucleic Acids Res. 14: 869–881.
  • Huet, J., N. Manard, G. Dieci, G. Peyroche, C. Conesa, O. Lefebvre, A. Ruet, M. Riva, and A. Sentenac 1996. RNA polymerase III and class III transcription factors from Saccharomyces cerevisiae. Methods Enzymol. 273: 249–267.
  • Hull, M. W., J. Erickson, M. Johnston, and D. R. Engelke 1994. tRNA genes as transcriptional repressor elements. Mol. Cell. Biol. 14: 1266–1277.
  • Khosla, M. K., and B. M. Honda 1989. Initiator tRNAMet genes from the nematode Caenorhabditis elegans. Gene 76: 321–330.
  • Kondo, K., J. Hodgkin, and R. H. Waterston 1988. Differential expression of five tRNAUAGTrp amber suppressors in Caenorhabditis elegans. Mol. Cell. Biol. 8: 3627–3635.
  • Kondo, K., B. Makovec, R. H. Waterston, and J. Hodgkin 1990. Genetic and molecular analysis of eight tRNAtrp amber suppressors in Caenorhabdiditis elegans. J. Mol. Biol. 215: 7–19.
  • Kramer, J. M., R. P. French, E.-C. Park, and J. J. Johnson 1990. The Caenorhabditis elegans rol-6 gene, which interacts with the sqt-1 collagen gene to determine organismal morphology, encodes a collagen. Mol. Cell. Biol. 10: 2081–2089.
  • Kuchino, Y., and T. Muramatsu 1996. Nonsense suppression in mammalian cells. Biochimie 78: 1007–1015.
  • Laski, F. A., S. Ganguly, P. A. Sharp, U. L. RajBhandary, and G. M. Rubin 1989. Construction, stable transformation and function of an amber suppressor tRNA gene in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 86: 6696–6698.
  • MacMorris, M., S. Broverman, S. Greenspoon, K. Lea, C. Madej, T. Blumenthal, and J. Spieth 1992. Regulation of vitellogenin gene expression in transgenic Caenorhabditis elegans: short sequences required for activation of the vit-2 promoter. Mol. Cell. Biol. 12: 1652–1662.
  • Mello, C. C., J. M. Kramer, D. Stinchcomb, and V. Ambros 1991. Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J. 10: 3959–3970.
  • Moerman, D. G., H. Hutter, G. P. Mullen, and R. Schnabel 1996. Cell autonomous expression of perlecan and plasticity of cell shape in embryonic muscle of C. elegans. Dev. Biol. 173: 228–242.
  • Palmer, J. M., and W. R. Folk 1990. Unraveling the complexities of transcription by RNA polymerase III. Trends Biochem. Sci. 15: 300–304.
  • Raymond, K. C., G. J. Raymond, and J. D. Johnson 1985. In vivo modulation of yeast tRNA gene expression by 5′-flanking sequences. EMBO J. 4: 2649–2656.
  • Reynolds, W. F. 1995. Developmental stage-specific regulation of Xenopus tRNA genes by an upstream promoter element. J. Biol. Chem. 270: 10703–10710.
  • Robinson, D. N., and L. Cooley 1997. Examination of the function of two kelch proteins generated by stop codon supression. Development 124: 1405–1417.
  • Russnak, R. H., and E. P. M. Candido 1985. Locus encoding a family of small heat shock genes in Caenorhabditis elegans: two genes duplicated to form a 3.8-kilobase inverted repeat. Mol. Cell. Biol. 5: 1268–1278.
  • Sajjadi, F. G., and G. B. Spiegelman 1987. Modulation of a Drosophila melanogaster tRNA gene transcription in vitro by a sequence TNNCT in its 5′ flank. Gene 60: 13–19.
  • Sanger, F., S. Nicklen, and A. R. Coulson 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463–5467.
  • Schnell, R., and J. Rine 1986. A position effect on the expression of a tRNA gene mediated by the SIR genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 6: 494–501.
  • Sharp, S. J., J. Schaak, L. Cooley, D. J. Burke, and D. Soll 1985. Structure and transcription of eukaryotic tRNA genes. Crit. Rev. Biochem. 19: 107–144.
  • Sprague, K. U. 1995. Transcription of eukaryotic tRNA genes tRNA: structure, biosynthesis, and function. In: Söll, D., and U. L. RajBhandary31–50American Society for Microbiology, Washington, D.C.
  • Sprague, K. U., O. Hagenbuchle, and M. C. Zuniga 1977. The nucleotide sequence of two silkgland alanine tRNAs: implications for fibroin synthesis and for initiator tRNA structure. Cell 22: 171–178.
  • Stringham, E. G., D. K. Dixon, D. K. Jones, and E. P. M. Candido 1992. Temporal and spatial expression patterns of the small heat shock (hsp16) genes in transgenic Caenorhabditis elegans. Mol. Biol. Cell 3: 221–233.
  • Stutz, F., E. Gouilloud, and S. G. Clarkson 1989. Oocyte and somatic tyrosine tRNA genes in Xenopus laevis. Genes Dev. 3: 1190–1198.
  • Suter, B., and E. Kubli 1988. tRNATyr genes of Drosophila melanogaster: expression of single-copy genes studied by S1 mapping. Mol. Cell. Biol. 8: 3322–3331.
  • Wang, H.-D., C.-H. Yuh, C. V. Dang, and D. L. Johnson 1995. The hepatitis B virus X protein increases the cellular level of TATA-binding protein, which mediates transactivation of RNA polymerase III genes. Mol. Cell. Biol. 15: 6720–6728.
  • Waterston, R. H. 1981. A second informational suppressor, sup-7, in Caenorhabditis elegans. Genetics 97: 307–325.
  • Willis, I. M. 1993. RNA polymerase III. Genes, factors and transcriptional specificity. Eur. J. Biochem. 212: 1–11.
  • Wilson, E. T., D. Larson, L. S. Young, and K. U. Sprague 1985. A large region controls tRNA gene transcription. J. Mol. Biol. 183: 153–163.
  • Wolffe, A. P. 1991. RNA polymerase III transcription. Curr. Opin. Cell Biol. 3: 461–466.
  • Young, L. S., N. Ahnert, and K. U. Sprague 1996. Silkworm TFIIIB binds both constitutive and silk gland-specific tRNAAla promoters but protects only the constitutive promoter from DNase I cleavage. Mol. Cell. Biol. 16: 1256–1266.
  • Young, L. S., N. Takahashi, and K. U. Sprague 1986. Upstream sequences confer distinctive transcriptional properties on genes encoding silkgland-specific tRNAAla. Proc. Natl. Acad. Sci. USA 83: 374–378.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.