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DNA Dynamics and Chromosome Structure

Relationship of the Xeroderma Pigmentosum Group E DNA Repair Defect to the Chromatin and DNA Binding Proteins UV-DDB and Replication Protein A

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Pages 3182-3190 | Received 23 Oct 1997, Accepted 19 Mar 1998, Published online: 28 Mar 2023

REFERENCES

  • Aboussekhra, A., M. Biggerstaff, M. K. K. Shivji, J. A. Vilpo, V. Moncollin, V. N. Podust, M. Protić, U. Hübscher, J.-M. Egly, and R. D. Wood 1995. Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80: 859–868.
  • Abramic, M., A. S. Levine, and M. Protić 1991. Purification of an ultraviolet-inducible, damage-specific DNA-binding protein from primate cells. J. Biol. Chem. 266: 22493–22500.
  • Chu, G., and E. Chang 1988. Xeroderma pigmentosum group E cells lack a nuclear factor that binds to damaged DNA. Science 242: 564–567.
  • Coverley, D., M. K. Kenny, D. P. Lane, and R. D. Wood 1992. A role for the human single-stranded DNA binding protein HSSB/RPA in an early stage of nucleotide excision repair. Nucleic Acids Res. 20: 3873–3880.
  • Coverley, D., M. K. Kenny, M. Munn, W. D. Rupp, D. P. Lane, and R. D. Wood 1991. Requirement for the replication protein SSB in human DNA excision repair. Nature 349: 538–541.
  • de Weerd-Kastelein, E., W. Keijzer, and D. Bootsma 1974. A third complementation group in xeroderma pigmentosum. Mutat. Res. 22: 87–91.
  • Dualan, R., T. Brody, S. Keeney, A. F. Nichols, A. Admon, and S. Linn 1995. Chromosomal localization and cDNA cloning of the genes (DDB1 and DDB2) for the p127 and p48 subunits of a human damage-specific DNA-binding protein. Genomics 29: 62–69.
  • Evans, E., J. Fellows, A. Coffer, and R. D. Wood 1997. Open complex formation around a lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein. EMBO J. 16: 625–638.
  • Evans, E., J. G. Moggs, J. R. Hwang, J.-M. Egly, and R. D. Wood 1997. Mechanism of open complex and dual incision formation by human nucleotide excision repair factors. EMBO J. 16: 6559–6573.
  • Feldberg, R. S., and L. Grossman 1976. A DNA binding protein from human placenta specific for ultraviolet damaged DNA. Biochemistry 15: 2402–2408.
  • Friedberg, E. C., G. C. Walker, and W. Siede 1995. DNA repair and mutagenesis. ASM Press, Washington, D.C.
  • Guzder, S. N., Y. Habraken, P. Sung, L. Prakash, and S. Prakash 1995. Reconstitution of yeast nucleotide excision-repair with purified rad proteins, replication protein A, and transcription factor TFIIH. J. Biol. Chem. 270: 12973–12976.
  • He, Z., L. A. Henricksen, M. S. Wold, and C. J. Ingles 1995. RPA involvement in the damage-recognition and incision steps of nucleotide excision repair. Nature 374: 566–569.
  • Henricksen, L., C. Umbricht, and M. Wold 1994. Recombinant replication protein A: expression, complex-formation, and functional-characterization. J. Biol. Chem. 269: 11121–11132.
  • Hirschfeld, S., A. S. Levine, K. Ozato, and M. Protić 1990. A constitutive damage-specific DNA-binding protein is synthesized at higher levels in UV-irradiated primate cells. Mol. Cell. Biol. 10: 2041–2048.
  • Hwang, B. J., and G. Chu 1993. Purification and characterization of a human protein that binds to damaged DNA. Biochemistry 32: 1657–1666.
  • Hwang, B. J., J. C. Liao, and G. Chu 1996. Isolation of a cDNA encoding a UV-damaged DNA binding factor defective in xeroderma pigmentosum group E cells. Mutat. Res. DNA Repair 362: 105–117.
  • Jones, C. J., and R. D. Wood 1993. Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA. Biochemistry 32: 12096–12104.
  • Kataoka, H., and Y. Fujiwara 1991. UV damage-specific DNA-binding protein in xeroderma-pigmentosum complementation group E. Biochem. Biophys. Res. Commun. 175: 1139–1143.
  • Kazantsev, A., D. Mu, A. F. Nichols, X. D. Zhao, S. Linn, and A. Sancar 1996. Functional complementation of xeroderma pigmentosum complementation group E by replication protein A in an in vitro system. Proc. Natl. Acad. Sci. USA 93: 5014–5018.
  • Keeney, S., G. J. Chang, and S. Linn 1993. Characterization of a human DNA-damage binding protein implicated in xeroderma pigmentosum E. J. Biol. Chem. 268: 21293–21300.
  • Keeney, S., A. P. M. Eker, T. Brody, W. Vermeulen, D. Bootsma, J. H. J. Hoeijmakers, and S. Linn 1994. Correction of the DNA repair defect in xeroderma pigmentosum group E by injection of a DNA damage binding protein. Proc. Natl. Acad. Sci. USA 91: 4053–4056.
  • Keeney, S., H. Wein, and S. Linn 1992. Biochemical heterogeneity in xeroderma pigmentosum complementation group E. Mutat. Res. 273: 49–56.
  • Lin, Y.-L., C. Chen, K. F. Keshav, E. Winchester, and A. Dutta 1996. Dissection of functional domains of the human DNA replication protein complex replication protein A. J. Biol. Chem. 271: 17190–17198.
  • Lin, Y.-L., M. Shivji, C. Chen, R. Kolodner, R. Wood, and A. Dutta 1998. The evolutionarily conserved zinc finger motif in the largest sub-unit of human RPA is required for DNA replication and mismatch repair but not for nucleotide excision repair. J. Biol. Chem. 273: 1453–1461.
  • Moggs, J. G., K. J. Yarema, J. M. Essigmann, and R. D. Wood 1996. Analysis of incision sites produced by human cell extracts and purified proteins during nucleotide excision repair of a 1,3-intrastrand d(GpTpG)-cisplatin adduct. J. Biol. Chem. 271: 7177–7186.
  • Mu, D., D. S. Hsu, and A. Sancar 1996. Reaction-mechanism of human DNA-repair excision nuclease. J. Biol. Chem. 271: 8285–8294.
  • Mu, D., C. H. Park, T. Matsunaga, D. S. Hsu, J. T. Reardon, and A. Sancar 1995. Reconstitution of human DNA-repair excision nuclease in a highly defined system. J. Biol. Chem. 270: 2415–2418.
  • Nichols, A. F., P. Ong, and S. Linn 1996. Mutations specific to the xeroderma pigmentosum group E DDB− phenotype. J. Biol. Chem. 271: 24317–24320.
  • O’Donovan, A., and R. D. Wood 1993. Identical defects in DNA repair in xeroderma pigmentosum group G and rodent ERCC group 5. Nature 363: 185–188.
  • Otrin, V., M. McLenigan, M. Takao, A. S. Levine, and M. Protić 1997. Translocation of a UV-damaged DNA-binding protein into a tight association with chromatin after treatment of mammalian cells with UV light. J. Cell Sci. 110: 1159–1168.
  • Payne, A., and G. Chu 1994. Xeroderma-pigmentosum group E binding-factor recognizes a broad spectrum of DNA damage. Mutat. Res. 310: 89–102.
  • Protić, M., and A. S. Levine 1993. Detection of DNA damage-recognition proteins using the band-shift assay and Southwestern hybridization. Electrophoresis 14: 682–692.
  • Rapić Otrin, V., and M. Protić. Unpublished data.
  • Reardon, J. T., A. F. Nichols, S. Keeney, C. A. Smith, J. S. Taylor, S. Linn, and A. Sancar 1993. Comparative analysis of binding of human damaged DNA-binding protein (XPE) and Escherichia coli damage recognition protein (UvrA) to the major ultraviolet photoproducts t[c,s]t, t[t,s]t, t[6-4]t, and t[dewar]t. J. Biol. Chem. 268: 21301–21308.
  • Shivji, M., and R. D. Wood. Unpublished results.
  • Shivji, M. K. K., M. K. Kenny, and R. D. Wood 1992. Proliferating cell nuclear antigen is required for DNA excision repair. Cell 69: 367–374.
  • Shivji, M. K. K., V. N. Podust, U. Hübscher, and R. D. Wood 1995. Nucleotide excision repair DNA synthesis by DNA polymerase ɛ in the presence of PCNA, RFC, and RPA. Biochemistry 34: 5011–5017.
  • Stefanini, M., S. Giliani, T. Nardo, S. Marinoni, V. Nazzaro, R. Rizzo, and G. Trevisan 1992. DNA-repair investigations in 9 Italian patients affected by trichothiodystrophy. Mutat. Res. 273: 119–125.
  • Stefanini, M., W. Vermeulen, G. Weeda, S. Giliani, T. Nardo, M. Mezzina, A. Sarasin, J. I. Harper, C. F. Arlett, J. H. J. Hoeijmakers, and A. R. Lehmann 1993. A new nucleotide-excision-repair gene associated with the disorder trichothiodystrophy. Am. J. Hum. Genet. 53: 817–821.
  • Takao, M., M. Abramic, M. Moos, V. R. Otrin, J. C. Wootton, M. McLenigan, A. S. Levine, and M. Protić 1993. A 127 kDa component of a UV-damaged DNA-binding complex, which is defective in some xeroderma pigmentosum group E patients, is homologous to a slime-mold protein. Nucleic Acids Res. 21: 4111–4118.
  • Thielmann, H. W., O. Popanda, L. Edler, and E. G. Jung 1991. Clinical symptoms and DNA-repair characteristics of xeroderma pigmentosum patients from Germany. Cancer Res. 51: 3456–3470.
  • Treiber, D. K., Z. H. Chen, and J. M. Essigmann 1992. An ultraviolet light-damaged DNA recognition protein absent in xeroderma pigmentosum group E cells binds selectively to pyrimidine (6-4) pyrimidone photoproducts. Nucleic Acids Res. 20: 5805–5810.
  • Tsurimoto, T., and B. Stillman 1989. Multiple replication factors augment DNA synthesis by the two eukaryotic DNA polymerases, α and δ. EMBO J. 8: 3883–3889.
  • van Assendelft, G. B., E. M. Rigney, and I. D. Hickson 1993. Purification of a HeLa cell nuclear protein that binds selectively to DNA irradiated with ultraviolet light. Nucleic Acids Res. 21: 3399–3404.
  • Wold, M. S. 1997. Replication protein A: a heterotrimeric single-stranded DNA binding protein required for eukaryotic DNA metabolism. Annu. Rev. Biochem. 66: 61–92.
  • Wood, R. D. 1989. Repair of pyrimidine dimer ultraviolet light photoproducts by human cell extracts. Biochemistry 28: 8287–8292.
  • Wood, R. D., M. Biggerstaff, and M. K. K. Shivji 1995. Detection and measurement of nucleotide excision repair synthesis by mammalian cell extracts in vitro. Methods 7: 163–175.

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