UTP-Dependent and -Independent Pathways of mRNA Turnover in Trypanosoma brucei Mitochondria

REFERENCES

• Adler, B. K., Harris, M. E., Bertrand, K. I., and Hajduk, S. L.. 1991. Modification of Trypanosoma brucei mitochondrial rRNA by posttranscriptional 3′ polyuridine tail formation. Mol. Cell. Biol. 11:5878–5884
   PubMedGoogle Scholar
• Attardi, G., Cantatore, P., Chomyn, A., Crews, S., Gelfand, R., Merkel, C., Montoya, J., and Ojala, D.. 1982. A comprehensive view of mitochondrial gene expression in human cells Mitochondrial genes. Slonimski, P., Borst, P., and Attardi, G. 51–71 Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y
   Google Scholar
• Bakalara, N., Simpson, A. M., and Simpson, L.. 1989. The Leishmania kinetoplast-mitochondrion contains terminal uridylyltransferase and RNA ligase activities. J. Biol. Chem. 264:18679–18686
   PubMedGoogle Scholar
• Bashirullah, A., Halsell, S. R., Cooperstock, R. L., Kloc, M., Karaiskakis, A., Fisher, W. W., Fu, W., Hamilton, J. K., Etkin, L. D., and Lipshitz, H. D.. 1999. Joint action of two RNA degradation pathways controls the timing of maternal transcript elimination at the midblastula transition in Drosophila melanogaster. EMBO J. 18:2610–2620
   PubMedGoogle Scholar
• Beelman, C. A., and Parker, R.. 1995. Degradation of mRNA in eukaryotes. Cell 81:179–183
   PubMed Web of Science ®Google Scholar
• Beutow, D. E., and Wood, W. M.. Mitochondrial translation system Subcellular biochemistry Roodyn, D. B. 5:29–38 Plenum Press, New York, N.Y
   Google Scholar
• Bhat, G. J., Myler, P. J., and Stuart, K.. 1991. 1978. The two ATPase 6 mRNAs of Leishmania tarentolae differ at their 3′ ends. Mol. Biochem. Parasitol. 48:139–149
   PubMedGoogle Scholar
• Bhat, G. J., Souza, A. E., Feagin, J. E., and Stuart, K.. 1992. Transcript-specific developmental regulation of polyadenylation in Trypanosoma brucei mitochondria. Mol. Biochem. Parasitol. 52:231–240
   PubMedGoogle Scholar
• Blum, B., and Simpson, L.. 1990. Guide RNAs in kinetoplast mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region. Cell 62:391–397
   PubMedGoogle Scholar
• Brown, T.. 1999. Dot and slot blotting of DNA Current protocols in molecular biology. Ausubel, F. A., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. 2.9.16–2.9.20 John Wiley & Sons, New York, N.Y
   Google Scholar
• Brun, R., and Schönenberger, M.. 1979. Cultivation and in vitro cloning of procyclic forms of Trypanosoma brucei in a semi-defined medium. Acta Trop. 36:289–292
   PubMed Web of Science ®Google Scholar
• Carpousis, A. J., Vanzo, N. F., and Raynal, L. C.. 1999. mRNA degradation: a tail of poly(A) and multiprotein machines. Trends Genet. 15:24–28
   PubMed Web of Science ®Google Scholar
• Cohen, S. N.. 1995. Surprises at the 3′ end of prokaryotic RNA. Cell 80:829–832
   PubMedGoogle Scholar
• Corell, R. A., Myler, P. J., and Stuart, K.. 1994. Trypanosoma brucei mitochondrial CR4 gene encodes an extensively edited mRNA with completely edited sequence only in bloodstream forms. Mol. Biochem. Parasitol. 64:65–74
   PubMedGoogle Scholar
• Decker, C. J., and Sollner-Webb, B.. 1990. RNA editing involves indiscriminate U changes throughout precisely defined editing domains. Cell 61:1001–1011
   PubMedGoogle Scholar
• Ehretsmann, C. P., Carpousis, A. J., and Krisch, H. M.. 1992. mRNA degradation in procaryotes. FASEB J. 6:3186–3192
   PubMedGoogle Scholar
• Feagin, J. E., Jasmer, D. P., and Stuart, K.. 1985. Apocytochrome b and other mitochondrial DNA sequences are differentially expressed during the life cycle of Trypanosoma brucei. Nucleic Acids Res. 13:4577–4596
   PubMedGoogle Scholar
• Gagliardi, D., and Leaver, C. J.. 1999. Polyadenylation accelerates the degradation of the mitochondrial mRNA associated with cytoplasmic male sterility in sunflower. EMBO J. 18:3757–3766
   PubMed Web of Science ®Google Scholar
• Gray, M. W.. 1992. The endosymbiont hypothesis revisited. Int. Rev. Cytol. 141:233–357
   PubMedGoogle Scholar
• Gupta, J. G., Li, Q., Thomson, A. B., and Hunt, A. G.. 1995. Characterization of a novel plant poly(A) polymerase. Plant Sci. 110:215–226
   Google Scholar
• Hancock, K., LeBlanc, A. J., Donze, D., and Hajduk, S. L.. 1992. Identification of nuclear encoded precursor tRNAs within the mitochondrion of Trypanosoma brucei. J. Biol. Chem. 267:23963–23971
   PubMedGoogle Scholar
• Harris, M. E., Moore, D. R., and Hajduk, S. L.. 1990. Addition of uridines to edited RNAs in trypanosome mitochondria occurs independently of transcription. J. Biol. Chem. 265:11368–11376
   PubMedGoogle Scholar
• Hayes, R., Kudla, J., and Gruissem, W.. 1999. Degrading the chloroplast mRNA: the role of polyadenylation. Trends Biochem. Sci. 24:199–202
   PubMedGoogle Scholar
• Hoeijmakers, J. H. J., Snijders, A., Janssen, J. W. G., and Borst, P.. 1981. Transcription of kinetoplast DNA in Trypanosoma brucei bloodstream and culture forms. Plasmid 5:329–350
   PubMed Web of Science ®Google Scholar
• Jackson, R. J., and Standart, N.. 1990. Do the poly(A) tail and 3′ untranslated region control mRNA translation? Cell 62:15–24
   PubMed Web of Science ®Google Scholar
• Jasmer, D. P., Feagin, J. E., and Stuart, K.. 1985. Diverse patterns of expression of the cytochrome c oxidase subunit I gene and unassigned reading frames 4 and 5 during the life cycle of Trypanosoma brucei. Mol. Cell. Biol. 5:3041–3047
   PubMedGoogle Scholar
• King, T. C., Sirdeskmukh, R., and Schlessinger, D.. 1986. Nucleolytic processing of ribonucleic acid transcripts in procaryotes. Microbiol. Rev. 50:428–451
   PubMedGoogle Scholar
• Koslowsky, D. J., and Yahampath, G.. 1997. Mitochondrial mRNA 3′ cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events. Mol. Biochem. Parasitol. 90:81–94
   PubMedGoogle Scholar
• Leegwater, P., Speijer, D., and Benne, R.. 1995. Identification by UV cross-linking of oligo(U)-binding proteins in mitochondria of the insect trypanosomatid Crithidia fasciculata. Eur. J. Biochem. 227:780–786
   PubMedGoogle Scholar
• Lund, E., and Dahlberg, J. E.. 1992. Cyclic 2′,3′-phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNA's. Science 255:327–330
   PubMed Web of Science ®Google Scholar
• Lupold, D. S., Caoile, A. G. F. S., and Stern, D. B.. 1999. Polyadenylation occurs at multiple sites in maize mitochondrial cox2 mRNA and is independent of editing status. Plant Cell 11:1565–1577
   PubMed Web of Science ®Google Scholar
• Manley, J. L.. 1995. Messenger RNA polyadenylation: a universal modification. Proc. Natl. Acad. Sci. USA 92:1800–1801
   PubMedGoogle Scholar
• Margossian, S. P., Li, H., Zassenhaus, H. P., and Butow, R. A.. 1996. The DExH box protein Suv3p is a component of a yeast mitochondrial 3′-to-5′ exoribonuclease that suppresses group I intron toxicity. Cell 84:199–209
   PubMed Web of Science ®Google Scholar
• Michelotti, E. F., and Hajduk, S. L.. 1987. Developmental regulation of trypanosome mitochondrial gene expression. J. Biol. Chem. 262:927–932
   PubMedGoogle Scholar
• Michelotti, E. F., Harris, M. E., Adler, B., Torri, A. F., and Hajduk, S. L.. 1992. Trypanosoma brucei mitochondrial ribosomal RNA synthesis, processing and developmentally regulated expression. Mol. Biochem. Parasitol. 54:31–42
   PubMedGoogle Scholar
• Militello, K. T., and Read, L. K.. 1999. Coordination of kRNA editing and polyadenylation in Trypanosoma brucei mitochondria: complete editing is not required for long poly(A) tail addition. Nucleic Acids Res. 27:1377–1385
   PubMedGoogle Scholar
• Min, J., Heuertz, R. M., and Zassenhaus, H. P.. 1993. Isolation and characterization of an NTP-dependent 3′-exoribonuclease from mitochondria of Saccharomyces cerevisiae. J. Biol. Chem. 268:7350–7357
   PubMedGoogle Scholar
• Min, J., and Zassenhaus, H. P.. 1993. A nucleoside triphosphate-regulated, 3′ exonucleolytic mechanism is involved in turnover of yeast mitochondrial RNAs. J. Bacteriol. 175:6245–6253
   PubMedGoogle Scholar
• Pollard, V. W., and Hajduk, S. L.. 1991. Trypanosoma equiperdum minicircles encode three distinct primary transcripts which exhibit guide RNA characteristics. Mol. Cell. Biol. 11:1668–1675
   PubMedGoogle Scholar
• Pollard, V. W., Harris, M. E., and Hajduk, S. L.. 1992. Native mRNA editing complexes from Trypanosoma brucei mitochondria. EMBO J. 11:4429–4438
   PubMedGoogle Scholar
• Poyton, R. O., Bellus, G., McKee, E. E., Sevarine, K. A., and Goehring, B.. 1996. In organello mitochondrial protein and RNA synthesis systems from Saccharomyces cerevisiae. Methods Enzymol. 264B:36–42
   Google Scholar
• Priest, J. W., and Hajduk, S. L.. 1994. Developmental regulation of mitochondrial biogenesis in Trypanosoma brucei. J. Bioenerg. Biomembr. 26:179–191
   PubMedGoogle Scholar
• Rajagopalan, L. E., and Malter, J. S.. 1997. Regulation of eukaryotic messenger RNA turnover. Prog. Nucleic Acid Res. 56:257–286
   PubMedGoogle Scholar
• Read, L. K., Myler, P. J., and Stuart, K.. 1992. Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei mitochondria. J. Biol. Chem. 267:1123–1128
   PubMedGoogle Scholar
• Read, L. K., Stankey, K. A., Fish, W. R., Muthiani, A. M., and Stuart, K.. 1994. Developmental regulation of RNA editing and polyadenylation in four life cycle stages of Trypanosoma congolense. Mol. Biochem. Parasitol. 68:297–306
   PubMedGoogle Scholar
• Rhee, S. G., Chock, P. B., and Stadtman, E. R.. 1989. Regulation of Escherichia coli glutamine synthetase. Adv. Enzymol. 62:37–92
   PubMedGoogle Scholar
• Ross, J.. 1995. mRNA stability in mammalian cells. Microbiol. Rev. 59:423–450
   PubMedGoogle Scholar
• Sachs, A., and Wahle, E.. 1993. Poly(A) tail metabolism and function in eucaryotes. J. Biol. Chem. 268:22955–22958
   PubMed Web of Science ®Google Scholar
• Sarkar, N.. 1997. Polyadenylation of mRNA in prokaryotes. Annu. Rev. Biochem. 66:173–197
   PubMed Web of Science ®Google Scholar
• Segel, I. H.. 1976. Biochemical calculations, 2nd ed. 378–379 John Wiley & Sons, New York, N.Y
   Google Scholar
• Souza, A. E., Shu, H.-H., Read, L. K., Myler, P. J., and Stuart, K. D.. 1993. Extensive editing of CR2 maxicircle transcripts of Trypanosoma brucei predicts a protein with homology to a subunit of NADH dehydrogenase. Mol. Cell. Biol. 13:6832–6840
   PubMedGoogle Scholar
• Stuart, K., Allen, T. E., Heidmann, S., and Seiwert, S.. 1997. RNA editing in kinetoplastid protozoa. Microbiol. Mol. Biol. Rev. 61:105–120
   PubMed Web of Science ®Google Scholar
• Stuart, K., and Feagin, J. E.. 1992. Mitochondrial DNA of kinetoplastids. Int. Rev. Cytol. 141:65–88
   PubMedGoogle Scholar
• Stuart, K., Gobright, E., Jenni, L., Milhausen, M., Thomashow, L., and Agabian, N.. 1984. The IsTaR 1 serodeme of Trypanosoma brucei: development of a new serodeme. J. Parasitol. 70:747–754
   PubMedGoogle Scholar
• Vanhamme, L., and Pays, E.. 1995. Control of gene expression in trypanosomes. Microbiol. Rev. 59:223–240
   PubMedGoogle Scholar