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Transcriptional Regulation

TAFII170 Interacts with the Concave Surface of TATA-Binding Protein To Inhibit Its DNA Binding Activity

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Pages 7523-7534 | Received 11 Jun 2001, Accepted 06 Aug 2001, Published online: 27 Mar 2023

REFERENCES

  • Adamkewicz, J. I., K. E. Hansen, W. A. Prud'homme, J. L. Davis, and J. Thorner. 2001. High-affinity interaction of yeast transcriptional regulator, Mot1, with TATA box-binding protein (TBP). J. Biol. Chem. 276:11883–11894.
  • Adamkewicz, J. I., C. G. F. Mueller, K. E. Hansen, W. A. Prud'homme, and J. Thorner. 2000. Purification and enzymatic properties of Mot1 ATPase, a regulator of basal transcription in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 275:21158–21168.
  • Albright, S. R., and R. Tjian. 2000. TAF's revisited: more data reveal new twists and confirm old ideas. Gene 242:1–13.
  • Andrade, M. A., C. Petosa, S. I. O'Donoghue, C. W. Muller, and P. Bork. 2001. Comparison of ARM and HEAT protein repeats. J. Mol. Biol. 309:1–18.
  • Auble, D. T., and S. Hahn. 1993. An ATP-dependent inhibitor of TBP binding to DNA. Genes Dev. 7:844–856.
  • Auble, D. T., K. E. Hansen, C. G. F. Mueller, W. S. Lane, J. Thorner, and S. Hahn. 1994. Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8:1920–1934.
  • Auble, D. T., and S. M. Steggerda. 1999. Testing for DNA tracking by Mot1, a SNF2/SWI2 protein family member. Mol. Cell. Biol. 19:412–423.
  • Auble, D. T., D. Wang, K. W. Post, and S. Hahn. 1997. Molecular analysis of the SNF2/SWI2 protein family member Mot1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA. Mol. Cell. Biol 17:4842–4851.
  • Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1992. Short protocols in molecular biology. John Wiley & Sons, New York, N.Y
  • Bagby, S., T. K. Mal, D. Liu, E. Raddatz, Y. Nakatani, and M. Ikura. 2000. TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP. FEBS Lett. 468:149–154.
  • Bai, Y., G. M. Perez, J. M. Beecham, and P. A. Weil. 1997. Structure-function analysis of TAF130: identification and characterization of a high-affinity TATA-binding protein interaction domain in the N terminus of yeast TAFII130. Mol. Cell. Biol. 17:3081–3093.
  • Beckmann, H., J.-L. Chen, T. O'Brien, and R. Tjian. 1995. Coactivator and promoter-selective properties of RNA polymerase I TAFs. Science 270:1506–1509.
  • Belotserkovskaya, R., D. E. Sterner, M. Deng, M. H. Sayre, P. M. Lieberman, and S. L. Berger. 2000. Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters. Mol. Cell. Biol. 20:634–647.
  • Bryant, G. O., L. S. Martel, S. K. Burley, and A. J. Berk. 1996. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes Dev. 10:2491–2504.
  • Cang, Y., D. T. Auble, and G. Prelich. 1999. A new regulatory domain on the TATA-binding protein. EMBO J. 18:6662–6671.
  • Chicca, J. J. II, D. T. Auble, and B. F. Pugh. 1998. Cloning and biochemical characterization of TAF-172, a human homolog of yeast Mot1. Mol. Cell. Biol. 18:1701–1710.
  • Collart, M. A.. 1996. The NOT, SPT3, and MOT1 genes functionally interact to regulate transcription at core promoters. Mol. Cell. Biol. 16:6668–6676.
  • Dantonel, J.-C., J.-M. Wurtz, O. Poch, D. Moras, and L. Tora. 1999. The TBP-like factor: an alternative transcription factor in metazoa?. Trends Biochem. Sci 285:335–339.
  • Darst, R. P., D. Wang, and D. T. Auble. 2001. MOT1-catalyzed TBP-DNA disruption: uncoupling DNA conformational change and role of upstream DNA. EMBO J. 20:2028–2040.
  • Davis, J. L., R. Kunisawa, and J. Thorner. 1992. A presumptive helicase (MOT1 gene product) affects gene expression and is required for viability in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 12:1879–1892.
  • Goldman-Levi, R., C. Miller, J. Bogoch, and N. B. Zak. 1996. Expanding the mot1 subfamily: 89B helicase encodes a new Drosophila melanogaster SNF2-related protein which binds to multiple site on polytene chromosomes. Nucleic Acids Res. 24:3121–3128.
  • Groves, M. R., N. Hanlon, P. Turowski, B. A. Hemmings, and D. Barford. 1999. The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs. Cell 96:99–110.
  • Hahn, S., S. Buratowski, P. A. Sharp, and L. Guarente. 1989. Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences. Proc. Natl. Acad. Sci. USA 86:5718–5722.
  • Hampsey, M.. 1998. Molecular genetics of the RNA polymerase II general transcriptional machinery. Microbiol. Mol. Biol. Rev. 62:465–503.
  • Hernandez, N.. 1993. TBP, a universal eukaryotic transcription factor?. Genes Dev. 7:1291–1308.
  • Holstege, F. C. P., P. C. van der Vliet, and H. T. M. Timmers. 1996. Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. EMBO J. 15:1666–1677.
  • Kang, J. J., D. T. Auble, J. A. Ranish, and S. Hahn. 1995. Analysis of the yeast factor TFIIA: distinct functional regions and a polymerase II-specific role in basal and activated transcription. Mol. Cell. Biol. 15:1234–1243.
  • Kim, J. L., D. B. Nikolov, and S. K. Burley. 1993. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365:520–527.
  • Kim, Y., J. H. Geiger, S. Hahn, and P. B. Sigler. 1993. Crystal structure of a yeast TBP/TATA-box complex. Nature 365:512–520.
  • Kobayashi, A., T. Miyake, Y. Ohyama, M. Kawaichi, and T. Kokubo. 2000. Mutations in the TATA-binding protein, affecting transcriptional activation, show synthetic lethality with the TAF145 gene lacking the TAF N-terminal domain in Saccharomyces cerevisiae. J. Biol. Chem. 276:395–405.
  • Kokubo, T., S. Yamashita, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1994. Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA-box binding. Proc. Natl. Acad. Sci. USA 91:3520–3524.
  • Kotani, T., K.-I. Banno, M. Ikura, A. G. Hinnebusch, Y. Nakatani, M. Kawaichi, and T. Kokubo. 2000. A role of transcriptional activators as antirepressors for the autoinhibitory activity of TATA box binding transcription factor IID. Proc. Natl. Acad. Sci. USA 97:7178–7183.
  • Kotani, T., T. Miyake, Y. Tsukihashi, A. G. Hinnebusch, Y. Nakatani, M. Kawaichi, and T. Kokubo. 1998. Identification of highly conserved amino-terminal segments of dTAFII230 and yTAFII145 that are functionally interchangeable for inhibiting TBP-DNA interactions in vitro and in promoting yeast cell growth in vivo. J. Biol. Chem. 273:32254–32264.
  • Liu, D., R. Ishima, K. I. Tong, S. Bagby, T. Kokubo, D. R. Muhandiram, L. E. Kay, Y. Nakatani, and M. Ikura. 1998. Solution structure of a TBP-TAFII230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 94:573–583.
  • Lively, T. N., H. A. Ferguson, S. K. Galasinski, A. G. Seto, and J. A. Goodrich. 2001. c-Jun binds the N terminus of human TAFII250 to derepress RNA polymerase II transcription in vitro. J. Biol. Chem. 276:25582–25588.
  • Madison, J. M., and F. Winston. 1997. Evidence that Spt3 functionally interacts with Mot1, TFIIA, and TATA-binding protein to confer promoter-specific transcriptional control in Saccharomyces cerevisiae. Mol. Cell. Biol. 17:287–295.
  • Meyers, R. E., and P. A. Sharp. 1993. TATA-binding protein and associated factors in polymerase II and polymerase III transcription. Mol. Cell. Biol. 13:7953–7960.
  • Miller, J.. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y
  • Muldrow, T. A., A. M. Campbell, P. A. Weil, and D. T. Auble. 1999. MOT1 can activate basal transcription in vitro by regulating the distribution of TATA binding protein between promoter and nonpromoter sites. Mol. Cell. Biol. 19:2835–2845.
  • Neuwald, A. F., and T. Hirano. 2000. HEAT repeats associated with condensins, cohesins, and other complexes involved in chromosome-related functions. Genome Res. 10:1445–1452.
  • Nishikawa, J.-I., T. Kokubo, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1997. Drosophila TAFII230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein. Proc. Natl. Acad. Sci. USA 94:85–90.
  • Pazin, M. J., and J. T. Kadonaga. 1997. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions?. Cell 88:737–740.
  • Poon, D., A. M. Campbell, Y. Bai, and P. A. Weil. 1994. Yeast TAF170 is encoded by MOT1 and exists in a TATA box-binding (TBP)-TBP associated factor complex distinct from transcription factor IID. J. Biol. Chem. 269:23135–23140.
  • Poon, D., and P. A. Weil. 1993. Immunopurification of yeast TATA-binding protein and associated factors. J. Biol. Chem. 268:15325–15328.
  • Strubin, M., and K. Struhl. 1992. Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell 68:721–730.
  • Taggart, A. K. P., T. S. Fisher, and B. F. Pugh. 1992. The TATA-binding protein and associated factors are components of pol III transcription factor TFIIIB. Cell 71:1015–1028.
  • Takada, S., J. T. Lis, S. Zhou, and R. Tjian. 2000. A TRF:BRF complex directs Drosophila RNA polymerase III transcription. Cell 101:459–469.
  • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673–4680.
  • Timmers, H. T. M., and P. A. Sharp. 1991. The mammalian TFIID protein is present in two functionally distinct complexes. Genes Dev. 5:1946–1956.
  • van der Knaap, J. A., J. W. Borst, R. Gentz, P. C. van der Vliet, and H. T. M. Timmers. 1997. Cloning of the cDNA for the TAFII170 subunit of transcription factor B-TFIID reveals homology to global transcription regulators in yeast and Drosophila. Proc. Natl. Acad. Sci. USA 94:11827–11832.
  • Yokomori, K., C. P. Verrijzer, and R. Tjian. 1998. An interplay between TATA box-binding protein and transcription factors IIE and IIA modulates DNA binding and transcription. Proc. Natl. Acad. Sci. USA 95:6722–6727.

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