REFERENCES
- Aiyar, A., P. Hindmarsh, A. M. Skalka, and J. Leis. 1996. Concerted integration of linear retroviral DNA by the avian sarcoma virus integrase in vitro: dependence on both long terminal repeat termini. J. Virol. 70:3571–3580.
- Andrake, M. D., and A. M. Skalka. 1996. Retroviral Integrase, putting the pieces together. J. Biol. Chem. 271:19633–19636.
- Arciszewska, L. K., D. Drake, and N. L. Craig. 1989. Transposon Tn7. cis-acting sequences in transposition and transposition immunity. J. Mol. Biol. 207:35–52.
- Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1999. Current protocols in molecular biology 4, section 20.1, Greene Publishing Associates/Wiley-Interscience, New York, N.Y
- Bartholomew, B., G. A. Kassavetis, B. R. Braun, and E. P. Geiduschek. 1990. The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent. EMBO. J. 9:2197–2205.
- Burns, N., B. Grimwade, P. B. Ross-Macdonald, E.-Y. Choi, K. Finberg, G. S. Roeder, and M. Snyder. 1994. Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae. Genes Dev. 8:1087–1105.
- Cannon, P. M., W. Wilson, E. Byles, S. M. Kingsman, and A. J. Kingsman. 1994. Human immunodeficiency virus type 1 integrase: effect on viral replication of mutations at highly conserved residues. J. Virol. 68:4768–4775.
- Chalker, D. L., and S. B. Sandmeyer. 1990. Transfer RNA genes are genomic targets for de novo transposition of the yeast retrotransposon Ty3. Genetics 126:837–850.
- Chalker, D. L., and S. B. Sandmeyer. 1992. Ty3 integrates within the region of RNA polymerase III transcription initiation. Genes Dev. 6:117–128.
- Clark, D. J., V. W. Bilanchone, L. J. Haywood, S. L. Dildine, and S. B. Sandmeyer. 1988. A yeast sigma composite element, Ty3, has properties of a retrotransposon. J. Biol. Chem. 263:1413–1423.
- Conesa, C., R. N. Swanson, P. Schultz, P. Oudet, and A. Sentenac. 1993. On the subunit composition, stoichiometry, and phosphorylation of the yeast transcription factor TFIIIC/tau. J. Biol. Chem. 268:18047–18052.
- Curcio, M. J., and D. J. Garfinkel. 1994. Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome. Genetics 136:1245–1259.
- Dumay, H., L. Rubbi, A. Sentenac, and C. Marck. 1999. Interaction between yeast RNA polymerase III and transcription factor TFIIIC via ABC10alpha and tau131 subunits. J. Biol.Chem. 274:33462–33468.
- Farnet, C. M., and F. D. Bushman. 1997. HIV-1 cDNA integration: requirement of HMG I(Y) protein for function of preintegration complexes in vitro. Cell 88:483–492.
- Gabrielsen, O. S., N. Marzouki, A. Ruet, A. Sentenac, and P. Fromogeot. 1989. Two polypeptide chains in yeast transcription factor τ interact with DNA. J. Biol. Chem. 264:7505–7511.
- Guthrie, C., and G. R. Fink. 1991. Guide to yeast genetics and molecular biology. Academic Press, Inc., San Diego, Calif
- Hansen, L. J., D. L. Chalker, and S. B. Sandmeyer. 1988. Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses. Mol.Cell.Biol. 8:5245–5256.
- Hayward, W. S., B. G. Neel, and S. M. Astrin. 1981. Activation of a cellular oncogene by promoter insertion in ALV-induced lymphoid leukosis. Nature 290:475–480.
- Hsieh, Y., Z. Wang, R. Kovelman, and R. G. Roeder. 1999. Cloning and characterization of two evolutionarily conserved subunits (TFIIIC102 and TFIIIC63) of human TFIIIC and their involvement in functional interactions with TFIIIB and RNA polymerase III. Mol.Cell.Biol. 19:4944–4952.
- Huang, H., J. Y. Hong, C. L. Burck, and S. W. Liebman. 1999. Host genes that affect the target-site distribution of the yeast retrotransposon Ty1. Genetics 151:1393–1407.
- Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163–168.
- Kalpana, G. V., S. Marmon, W. Wang, G. R. Crabtree, and S. P. Goff. 1994. Binding and stimulation of HIV-1 integrase by a human homolog of yeast transcription factor SNF5. Science 266:2002–2006.
- Kassavetis, G. A., D. L. Riggs, R. Negri, L. H. Nguyen, and E. P. Geiduschek. 1989. Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes. Mol.Cell.Biol. 9:2551–2566.
- Kim, J. M., S. Vanguri, J. D. Boeke, A. Gabriel, and D. F. Voytas. 1998. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res. 8:464–478.
- Kinsey, P., and S. Sandmeyer. 1995. Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3. Genetics 139:81–94.
- Kinsey, P. T., and S. B. Sandmeyer. 1991. Adjacent pol II and pol III promoters: transcription of the yeast retrotransposon Ty3 and a target tRNA gene. Nucleic Acids Res. 19:1317–1324.
- Kirchner, J., C. M. Connolly, and S. B. Sandmeyer. 1995. Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element. Science 267:1488–1491.
- Kunkel, T. A.. 1985. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc.Natl.Acad.Sci.USA 82:488–492.
- Lee, M. S., and R. Craigie. 1998. A previously unidentified host protein protects retroviral DNA from autointegration. Proc.Natl.Acad.Sci.USA 95:1528–1533.
- Manaud, N., R. Arrebola, B. Buffin-Meyer, O. Lefebvre, H. Voss, M. Riva, C. Conesa, and A. Sentenac. 1998. A chimeric subunit of yeast transcription factor IIIC forms a subcomplex with tau95. Mol.Cell.Biol. 18:3191–3200.
- Menees, T. M., and S. B. Sandmeyer. 1994. Transposition of the yeast retroviruslike element Ty3 is dependent on the cell cycle. Mol.Cell.Biol. 14:8229–8240.
- Morris, M. E., and S. Jinks-Robertson. 1991. Nucleotide sequence of the LYS2 gene of Saccharomyces cerevisiae: homology to Bacillus brevis tyrocidine synthetase. Gene 98:141–145.
- Nymark-McMahon, M. H., and S. B. Sandmeyer. 1999. Mutations in nonconserved domains of Ty3 integrase affect multiple stages of the Ty3 life cycle. J. Virol. 73:453–465.
- Sandmeyer, S. B., M. Aye, and T. M. Menees. Ty3: a position-specific, cypsylike element in Saccharomyces cerevisiae. In N. L. Craig, R. Craigie, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II, in press. ASM Press, Washington, D.C.
- Sherman, F., G. R. Fink, and J. B. Hicks. 1986. Methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y
- Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficent manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27.
- Steffan, J. S., D. A. Keys, J. A. Dodd, and M. Nomura. 1996. The role of TBP in rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae: TBP is required for upstream activation factor-dependent recruitment of core factor. Genes Dev. 10:2551–2563.
- Swanson, R. N., C. Conesa, O. Lefebvre, C. Carles, A. Ruet, E. Quemeneur, J. Gagnon, and A. Sentenac. 1991. Isolation of TFC1, a gene encoding one of two DNA-binding subunits of yeast transcription factor tau (TFIIIC). Proc.Natl.Acad.Sci.USA 88:4887–4891.
- White, R. J.. 1998. RNA polymerase III transcription. Springer-Verlag KG and R. G. Landes, Berlin, Germany
- Yieh, L., G. Kassavetis, E. P. Geiduschek, and S. B. Sandmeyer. 2000. The Brf and TBP subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3. J. Biol. Chem. 275:29767–29771.
- Zheng, R., T. M. Jenkins, and R. Craigie. 1996. Zinc folds the N-terminal domain of HIV-1 integrase, promotes multimerization, and enhances catalytic activity. Proc.Natl.Acad.Sci.USA 93:13659–13664.
- Zhu, Y., S. Zou, D. A. Wright, and D. F. Voytas. 1999. Tagging chromatin with retrotransposons: target specificity of the Saccharomyces Ty5 retrotransposon changes with the chromosomal localization of Sir3p and Sir4p. Genes Dev. 13:2738–2749.