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DNA Dynamics and Chromosome Structure

Global Control of Histone Modification by the Anaphase-Promoting Complex

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Pages 9136-9149 | Received 02 Sep 2003, Accepted 18 Sep 2003, Published online: 27 Mar 2023

REFERENCES

  • Ahmad, K., and S. Henikoff. 2002. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9: 1191–1200.
  • Alland, L., G. David, H. Shen-Li, J. Potes, R. Muhle, H. C. Lee, H. Hou, Jr., K. Chen, and R. A. DePinho. 2002. Identification of mammalian Sds3 as an integral component of the Sin3/histone deacetylase corepressor complex. Mol. Cell. Biol. 22: 2743–2750.
  • Altheim, B. A., and M. C. Schultz. 1999. Histone modification governs the cell cycle regulation of a replication-independent chromatin assembly pathway in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 96: 1345–1350.
  • Baumeister, W., J. Walz, F. Zuhl, and E. Seemuller. 1998. The proteasome: paradigm of a self-compartmentalizing protease. Cell 92: 367–380.
  • Biggins, S., F. F. Severin, N. Bhalla, I. Sassoon, A. A. Hyman, and A. W. Murray. 1999. The conserved protein kinase Ipl1 regulates microtubule binding to kinetochores in budding yeast. Genes Dev. 13: 532–544.
  • Buvelot, S., S. Y. Tatsutani, D. Vermaak, and S. Biggins. 2003. The budding yeast Ipl1/Aurora protein kinase regulates mitotic spindle disassembly. J. Cell Biol. 160: 329–339.
  • Carmen, A. A., P. R. Griffin, J. R. Calaycay, S. E. Rundlett, Y. Suka, and M. Grunstein. 1999. Yeast HOS3 forms a novel trichostatin A-insensitive homodimer with intrinsic histone deacetylase activity. Proc. Natl. Acad. Sci. USA 96: 12356–12361.
  • Carroll, C. W., and D. O. Morgan. 2002. The Doc1 subunit is a processivity factor for the anaphase-promoting complex. Nat. Cell. Biol. 4: 880–887.
  • Castro, A., Y. Arlot-Bonnemains, S. Vigneron, J. C. Labbe, C. Prigent, and T. Lorca. 2002. APC/Fizzy-Related targets Aurora-A kinase for proteolysis. EMBO Rep. 3: 457–462.
  • Castro, A., S. Vigneron, C. Bernis, J. C. Labbe, C. Prigent, and T. Lorca. 2002. The D-box-activating domain (DAD) is a new proteolysis signal that stimulates the silent D-box sequence of Aurora-A. EMBO Rep. 3: 1209–1214.
  • Choder, M. 1991. A general topoisomerase I-dependent transcriptional repression in the stationary phase in yeast. Genes Dev. 5: 2315–2326.
  • Clarke, A. S., J. E. Lowell, S. J. Jacobson, and L. Pillus. 1999. Esa1p is an essential histone acetyltransferase required for cell cycle progression. Mol. Cell. Biol. 19: 2515–2526.
  • Crosio, C., G. M. Fimia, R. Loury, M. Kimura, Y. Okano, H. Zhou, S. Sen, C. D. Allis, and P. Sassone-Corsi. 2002. Mitotic phosphorylation of histone H3: spatio-temporal regulation by mammalian Aurora kinases. Mol. Cell. Biol. 22: 874–885.
  • DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680–686.
  • Edmondson, D. G., J. K. Davie, J. Zhou, B. Mirnikjoo, K. Tatchell, and S. Y. Dent. 2002. Site-specific loss of acetylation upon phosphorylation of histone H3. J. Biol. Chem. 277: 29496–29502.
  • Epstein, C. B., and F. R. Cross. 1992. CLB5: a novel B cyclin from budding yeast with a role in S phase. Genes Dev. 6: 1695–1706.
  • Feng, Z. H., S. E. Wilson, Z. Y. Peng, K. K. Schlender, E. M. Reimann, and R. J. Trumbly. 1991. The yeast GLC7 gene required for glycogen accumulation encodes a type 1 protein phosphatase. J. Biol. Chem. 266: 23796–23801.
  • Fuge, E. K., E. L. Braun, and M. Werner-Washburne. 1994. Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. J. Bacteriol. 176: 5802–5813.
  • Gabellini, D., I. N. Colaluca, H. C. Vodermaier, G. Biamonti, M. Giacca, A. Falaschi, S. Riva, and F. A. Peverali. 2003. Early mitotic degradation of the homeoprotein HOXC10 is potentially linked to cell cycle progression. EMBO J. 22: 3715–3724.
  • Ghavidel, A., and M. C. Schultz. 2001. TATA binding protein-associated CK2 transduces DNA damage signals to the RNA polymerase III transcriptional machinery. Cell 106: 575–584.
  • Gieffers, C., B. H. Peters, E. R. Kramer, C. G. Dotti, and J. M. Peters. 1999. Expression of the CDH1-associated form of the anaphase-promoting complex in postmitotic neurons. Proc. Natl. Acad. Sci. USA 96: 1317–11322.
  • Gmachl, M., C. Gieffers, A. V. Podtelejnikov, M. Mann, and J. M. Peters. 2000. The RING-H2 finger protein APC11 and the E2 enzyme UBC4 are sufficient to ubiquitinate substrates of the anaphase-promoting complex. Proc. Natl. Acad. Sci. USA 97: 8973–8978.
  • Hans, F., and S. Dimitrov. 2001. Histone H3 phosphorylation and cell division. Oncogene 20: 3021–3027.
  • Hardwick, J. S., F. G. Kuruvilla, J. K. Tong, A. F. Shamji, and S. L. Schreiber. 1999. Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. Proc. Natl. Acad. Sci. USA 96: 14866–14870.
  • Harkness, T. A., G. F. Davies, V. Ramaswamy, and T. G. Arnason. 2002. The ubiquitin-dependent targeting pathway in Saccharomyces cerevisiae plays a critical role in multiple chromatin assembly regulatory steps. Genetics 162: 615–632.
  • Harper, J. W., J. L. Burton, and M. J. Solomon. 2002. The anaphase-promoting complex: it's not just for mitosis any more. Genes Dev. 16: 2179–2206.
  • Hecht, A., T. Laroche, S. Strahl-Bolsinger, S. M. Gasser, and M. Grunstein. 1995. Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast. Cell 80: 583–592.
  • Herman, P. K. 2002. Stationary phase in yeast. Curr. Opin. Microbiol. 5: 602–607.
  • Hildebrandt, E. R., and M. A. Hoyt. 2001. Cell cycle-dependent degradation of the Saccharomyces cerevisiae spindle motor Cin8p requires APC(Cdh1) and a bipartite destruction sequence. Mol. Biol. Cell 12: 3402–3416.
  • Honda, K., H. Mihara, Y. Kato, A. Yamaguchi, H. Tanaka, H. Yasuda, K. Furukawa, and T. Urano. 2000. Degradation of human Aurora2 protein kinase by the anaphase-promoting complex-ubiquitin-proteasome pathway. Oncogene 19: 2812–2819.
  • Howe, L., D. Auston, P. Grant, S. John, R. G. Cook, J. L. Workman, and L. Pillus. 2001. Histone H3 specific acetyltransferases are essential for cell cycle progression. Genes Dev. 15: 3144–3154.
  • Hsu, J. Y., Z. W. Sun, X. Li, M. Reuben, K. Tatchell, D. K. Bishop, J. M. Grushcow, C. J. Brame, J. A. Caldwell, D. F. Hunt, R. Lin, M. M. Smith, and C. D. Allis. 2000. Mitotic phosphorylation of histone H3 is governed by Ipl1/aurora kinase and Glc7/PP1 phosphatase in budding yeast and nematodes. Cell 102: 279–291.
  • Irniger, S., M. Bäumer, and G. H. Braus. 2000. Glucose and ras activity influence the ubiquitin ligases APC/C and SCF in Saccharomyces cerevisiae. Genetics 154: 1509–1521.
  • Jenuwein, T., and C. D. Allis. 2001. Translating the histone code. Science 293: 1074–1080.
  • Kadam, S., and B. M. Emerson. 2002. Mechanisms of chromatin assembly and transcription. Curr. Opin. Cell Biol. 14: 262–268.
  • Kang, J., I. M. Cheeseman, G. Kallstrom, S. Velmurugan, G. Barnes, and C. S. Chan. 2001. Functional cooperation of Dam1, Ipl1, and the inner centromere protein (INCENP)-related protein Sli15 during chromosome segregation. J. Cell Biol. 155: 763–774.
  • Kim, J. H., J. S. Kang, and C. S. Chan. 1999. Sli15 associates with the ipl1 protein kinase to promote proper chromosome segregation in Saccharomyces cerevisiae. J. Cell Biol. 145: 1381–1394.
  • Knoepfler, P. S., and R. N. Eisenman. 1999. Sin meets NuRD and other tails of repression. Cell 99: 447–450.
  • Krebs, J. E., M. H. Kuo, C. D. Allis, and C. L. Peterson. 1999. Cell cycle-regulated histone acetylation required for expression of the yeast HO gene. Genes Dev. 13: 412–1421.
  • Kristjuhan, A., J. Walker, N. Suka, M. Grunstein, D. Roberts, B. R. Cairns, and J. Q. Svejstrup. 2002. Transcriptional inhibition of genes with severe histone H3 hypoacetylation in the coding region. Mol. Cell 10: 925–933.
  • Kruhlak, M. J., M. J. Hendzel, W. Fischle, N. R. Bertos, S. Hameed, X. J. Yang, E. Verdin, and D. P. Bazett-Jones. 2001. Regulation of global acetylation in mitosis through loss of histone acetyltransferases and deacetylases from chromatin. J. Biol. Chem. 276: 38307–38319.
  • Kurdistani, S. K., D. Robyr, S. Tavazoie, and M. Grunstein. 2002. Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nat. Genet. 31: 248–254.
  • Lee, T. I., H. C. Causton, F. C. Holstege, W. C. Shen, N. Hannett, E. G. Jennings, F. Winston, M. R. Green, and R. A. Young. 2000. Redundant roles for the TFIID and SAGA complexes in global transcription. Nature 405: 701–704.
  • Lenssen, E., U. Oberholzer, J. Labarre, C. De Virgilio, and M. A. Collart. 2002. Saccharomyces cerevisiae Ccr4-Not complex contributes to the control of Msn2p-dependent transcription by the Ras/cAMP pathway. Mol. Microbiol. 43: 1023–1037.
  • Leverson, J. D., C. A. Joazeiro, A. M. Page, H. Huang, P. Hieter, and T. Hunter. 2000. The APC11 RING-H2 finger mediates E2-dependent ubiquitination. Mol. Biol. Cell 11: 2315–2325.
  • Ling, X., T. A. Harkness, M. C. Schultz, G. Fisher-Adams, and M. Grunstein. 1996. Yeast histone H3 and H4 amino termini are important for nucleosome assembly in vivo and in vitro: redundant and position-independent functions in assembly but not in gene regulation. Genes Dev. 15: 686–699.
  • Littlepage, L. E., and J. V. Ruderman. 2002. Identification of a new APC/C recognition domain, the A box, which is required for the Cdh1-dependent destruction of the kinase Aurora-A during mitotic exit. Genes Dev. 16: 2274–2285.
  • Lo, W.-S., L. Duggan, N. C. T. Emre, R. Belotserkovskya, W. S. Lane, R. Shiekhattar, and S. L. Berger. 2001. Snf1—a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription. Science 293: 1142–1146.
  • Lo, W.-S., R. C. Trievel, J. R. Rojas, L. Duggan, J. Y. Hsu, C. D. Allis, R. Marmorstein, and S. L. Berger. 2000. Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine14. Mol. Cell 5: 917–926.
  • Ma, X.-J., J. Wu, B. A. Altheim, M. C. Schultz, and M. Grunstein. 1998. Deposition-related sites K5/K12 in histone H4 are not required for nucleosome deposition in yeast. Proc. Natl. Acad. Sci. USA 95: 6693–6698.
  • Martzen, M. R., S. M. McCraith, S. L. Spinelli, F. M. Torres, S. Fields, E. J. Grayhack, and E. M. Phizicky. 1999. A biochemical genomics approach for identifying genes by the activity of their products. Science 286: 1153–1155.
  • Moskvina, E., C. Schuller, C. T. Maurer, W. H. Mager, and H. Ruis. 1998. A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements. Yeast 14: 1041–1050.
  • Murnion, M. E., R. R. Adams, D. M. Callister, C. D. Allis, W. C. Earnshaw, and J. R. Swedlow. 2001. Chromatin-associated protein phosphatase 1 regulates aurora-B and histone H3 phosphorylation. J. Biol. Chem. 276: 26656–26665.
  • Nigavekar, S. S., Y. S. Tan, and J. F. Cannon. 2002. Glc8 is a glucose-repressible activator of Glc7 protein phosphatase-1. Arch. Biochem. Biophys. 404: 71–79.
  • Nigg, E. A. 2001. Mitotic kinases as regulators of cell division and its checkpoints. Nat. Rev. Mol. Cell. Biol. 2: 21–32.
  • Ota, T., S. Suto, H. Katayama, Z. B. Han, F. Suzuki, M. Maeda, M. Tanino, Y. Terada, Y., and M. Tatsuka. 2002. Increased mitotic phosphorylation of histone H3 attributable to AIM-1/Aurora-B overexpression contributes to chromosome number instability. Cancer Res. 62: 5168–5177.
  • Passmore, L. A., E. A. McCormack, S. W. Au, A. Paul, K. R. Willison, J. W. Harper, and D. Barford. 2003. Doc1 mediates the activity of the anaphase-promoting complex by contributing to substrate recognition. EMBO J. 22: 786–796.
  • Peters, J.-M. 2002. The anaphase-promoting complex: proteolysis in mitosis and beyond. Mol. Cell 9: 931–943.
  • Peterson, C. L. 2001. Chromatin: mysteries solved? Biochem. Cell. Biol. 79: 219–225.
  • Piñon, R. 1979. Folded chromosomes in meiotic yeast cells: analysis of early meiotic events. J. Mol. Biol. 129: 433–437.
  • Piñon, R., and Y. Salts. 1977. Isolation of folded chromosomes from the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 74: 2850–2854.
  • Reid, J. L., V. R. Iyer, P. O. Brown, and K. Struhl. 2000. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase. Mol. Cell 6: 1297–1307.
  • Robinson, K. M., A. von Kieckebusch-Guck, and B. D. Lemire. 1991. Isolation and characterization of a Saccharomyces cerevisiae mutant disrupted for the succinate dehydrogenase flavoprotein subunit. J. Biol. Chem. 266: 21347–21350.
  • Rohde, J. R., and M. E. Cardenas. 2003. The Tor pathway regulates gene expression by linking nutrient sensing to histone acetylation. Mol. Cell. Biol. 23: 629–635.
  • Rundlett, S. E., A. A. Carmen, R. Kobayashi, S. Bavykin, B. M. Turner, and M. Grunstein. 1996. HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription. Proc. Natl. Acad. Sci. USA 93: 14503–14508.
  • Sandmeier, J. J., S. French, Y. Osheim, W. L. Cheung, C. M. Gallo, A. L. Beyer, and J. S. Smith. 2002. RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase. EMBO J. 21: 4959–4968.
  • Sanz, P., G. R. Alms, T. A. J. Haystead, and M. Carlson. 2000. Regulatory interactions between the Reg1-Glc7 protein phosphatase and the Snf1 protein kinase. Mol. Cell. Biol. 20: 1321–1328.
  • Schmelzle, T., and M. N. Hall. 2000. TOR, a central controller of cell growth. Cell 103: 253–262.
  • Schultz, M. C. 1999. Chromatin assembly in yeast cell-free extracts. Methods 17: 161–172.
  • Scrittori, L., F. Hans, D. Angelov, M. Charra, C. Prigent, and S. Dimitrov. 2001. pEg2 aurora-A kinase, histone H3 phosphorylation, and chromosome assembly in Xenopus egg extract. J. Biol. Chem. 276: 30002–30010.
  • Stroschein, S. L., S. Bonni, J. L. Wrana, and K. Luo. 2001. Smad3 recruits the anaphase-promoting complex for ubiquitination and degradation of SnoN. Genes Dev. 15: 2822–2836.
  • Sugiyama, K. Sugiura, T. Hara, K. Sugimoto, H. Shima, K. Honda, K. Furukawa, S. Yamashita, and T. Urano. 2002. Aurora-B associated protein phosphatases as negative regulators of kinase activation. Oncogene 21: 3103–3111.
  • Suka, N., Y. Suka, A. A. Carmen, J. Wu, and M. Grunstein. 1997. Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol. Cell 8: 473–479.
  • Velculescu, V. E., L. Zhang, W. Zhou, J. Vogelstein, M. A. Basrai, D. E. Bassett, P. Hieter, B. Vogelstein, and K. W. Kinzler. 1997. Characterization of the yeast transcriptome. Cell 88: 243–251.
  • Vogelauer, M., J. Wu, N. Suka, and M. Grunstein. 2000. Global histone acetylation and deacetylation in yeast. Nature 408: 495–498.
  • Walker, S. S., W.-C. Shen, J. C. Reese, L. M. Apone, and M. R. Green. 1997. Yeast TAFII145 required for transcription of G1/S cyclin genes and regulated by the cellular growth state. Cell 90: 607–614.
  • Wan, Y., X. Liu, and M. W. Kirschner. 2001. The anaphase-promoting complex mediates TGF-β signaling by targeting SnoN for destruction. Mol. Cell 8: 1027–1039.
  • Werner-Washburne, M., E. L. Braun, M. E. Crawford, and N. M. Peck. 1996. Stationary phase in Saccharomyces cerevisiae. Mol. Microbiol. 19: 1159–1166.
  • Werner-Washburne, M., E. L. Braun, G. C. Johnston, and R. A Singer. 1993. Stationary phase in the yeast Saccharomyces cerevisiae. Microbiol. Rev. 57: 383–401.
  • Wyrick, J. J., F. C. Holstege, E. G. Jennings, H. C. Causton, D. Shore, M. Grunstein, E. S. Lander, and R. A. Young. 1999. Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402: 418–421.
  • Yamaki, M., T. Umehara, T. Chimura, and M. Horikoshi. 2001. Cell death with predominant apoptotic features in Saccharomyces cerevisiae mediated by deletion of the histone chaperone ASF1/CIA1. Genes Cells 6: 1043–1054.
  • Yoshida, M., M. Kijima, M. Akita, and T. Beppu. 1990. Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A. J. Biol. Chem. 265: 17174–17179.
  • Young, E. T., N. Kacherovsky, and K. Van Riper. 2002. Snf1 protein kinase regulates Adr1 binding to chromatin but not transcription activation. J. Biol. Chem. 277: 38095–38103.
  • Zachariae, W., and K. Nasmyth. 1999. Whose end is destruction: cell division and the anaphase-promoting complex. Genes Dev. 13: 2039–2058.

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