34
Views
41
CrossRef citations to date
0
Altmetric
Gene Expression

Enhanceosome Formation over the Beta Interferon Promoter Underlies a Remote-Control Mechanism Mediated by YY1 and YY2

&
Pages 10159-10170 | Received 29 Apr 2005, Accepted 16 Aug 2005, Published online: 27 Mar 2023

REFERENCES

  • Agalioti, T., S. Lomvardas, B. Parekh, J. Yie, T. Maniatis, and D. Thanos. 2000. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter. Cell 103:667–678.
  • Agalioti, T., G. Chen, and D. Thanos. 2002. Deciphering the transcriptional histone acetylation code for a human gene. Cell 111:381–392.
  • Anderson, J. N. 1986. Detection, sequence patterns and function of unusual DNA structures. Nucleic Acids Res. 21:8513–8533.
  • Baer, A., D. Schübeler, and J. Bode. 2000. Transcriptional properties of genomic transgene integration sites marked by electroporation or retroviral infection. Biochemistry 39:7041–7049.
  • Benham, C., T. Kohwi-Shigematsu, and J. Bode. 1997. Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions. J. Mol. Biol. 272:181–196.
  • Billiau, A., V. G. Edy, H. Hermans, J. van Damme, J. Desmyter, J. Georgiades, and P. de Somer. 1977. Human interferon: mass production in a newly established cell line, MG-63. Antimicrob. Agents Chemother. 12:11–15.
  • Bode, J., H. J. Pucher, and K. Maaβ. 1986. Chromatin structure and induction-dependent conformational changes of human interferon-β genes in a mouse host cell. Eur. J. Biochem. 158:393–401.
  • Bode, J., and K. Maaβ. 1988. The chromatin domain surrounding the human interferon-β gene as defined by scaffold-attached regions (SARs). Biochemistry 27:4706–4711.
  • Bode, J., C. Benham, E. Ernst, A. Knopp, R. Marschalek, R. Strick, and P. Strissel. 2000. Fatal connections: when DNA ends meet on the nuclear matrix. J. Cell. Biochem. Suppl. 35:3–22.
  • Bonnefoy, E., M-T. Bandu, and J. Doly. 1999. Specific binding of high mobility-group I (HMGI) protein and histone H1 to the upstream AT-rich region of the murine beta interferon promoter: HMGI protein acts as a potential antirepressor of the promoter. Mol. Cell. Biol. 19:2803–2816.
  • Bushmeyer, S. M., and M. L. Atchison. 1998. Identification of YY1 sequences necessary for association with the nuclear matrix and for transcriptional repression functions. J. Cell. Biochem. 68:484–499.
  • Guo, B., P. R. Odgren, A. J. van Wijnen, T. J. Last, J. Nickerson, S. Penman, J. B. Lian, J. L. Stein, and G. S. Stein. 1995. The nuclear matrix protein NMP-1 is the transcription factor YY1. Proc. Natl. Acad. Sci. USA 92:10526–10530.
  • Hauser, H., G. Gross, W. Bruns, H. K. Hochkeppel, U. Mayr, and J. Collins. 1982. Inducibility of human β-interferon gene in mouse L-cell clones. Nature 297:650–654.
  • Hendzel, M. J., G. P. Delcuve, and J. R. Davie. 1991. Histone deacetylase is a component of the internal nuclear matrix. J. Biol. Chem. 266:21936–21942.
  • Hendzel, M. J., J. M. Sun, H. Y. Chen, J. B. Rattner, and J. R. Davie. 1994. Histone acetyltransferase is associated with the nuclear matrix. J. Biol. Chem. 269:22894–22901.
  • Homberger, H. P. 1989. Bent DNA is a structural feature of scaffold-attached regions in Drosophila melanogaster interphase nuclei. Chromosoma 98:99–104.
  • Huang, S. 1994. Blimp-1 is the murine homolog of the human transcriptional repressor PRDI-BF1. Cell 78:9.
  • Klar, M. 2005. Strukturgebende Signale im eukaryontischen Genom—Vorhersage und Verifizierung. Dissertation. Technical University of Braunschweig, Braunschweig, Germany. [Online.] http://opus.tu-bs.de/opus/volltexte/2005/713/pdf/DissMK.pdf.
  • Klar, M., E. Stellamanns, P. A. K., A. Gluch, and J. Bode. Dominant genomic structures: detection and potential signal functions in the interferon-beta domain. Gene, in press.
  • Klehr, D., K. Maaβ, and J. Bode. 1991. Scaffold-attached regions from the human IFN-β domain can be used to enhance the expression of genes under the control of various promoters. Biochemistry 30:1264–1270.
  • Knopp, A. 2001. Studien zur Struktur von S/MARs am Beispiel einer genomischen Domäne aus dem humanen Interferon-Gencluster. Dissertation. Technical University Braunschweig, Braunschweig, Germany. [Online.] http://opus.tu-bs.de/opus/volltexte/2001/200/pdf/Dissertati.PDF.
  • Lopez, L., R. Reeves, M. L. Island, M. T. Bandu, N. Christeff, J. Doly, and S. Navarro. 1997. Silencer activity in the interferon-A gene promoters. J. Biol. Chem. 272:22788–22799.
  • McNeil, S., B. Guo, J. L. Stein, J. B. Lian, S. Bushmeyer, E. Seto, M. L. Atchison, S. Penman, A. J. van Wijnen, and G. S. Stein. 1998. Targeting of the YY1 transcription factor to the nucleolus and the nuclear matrix in situ: the C-terminus is a principal determinant for nuclear trafficking. J. Cell. Biochem. 68:500–510.
  • Munshi, N., J. Yie, M. Merika, K. Senger, S. Lomvardas, T. Agalioti, and D. Thanos. 1999. The IFN-β enhancer: a paradigm for understanding activation and repression of inducible gene expression. Cold Spring Harb. Symp. Quant. Biol. 64:149–159.
  • Natesan, S., and M. Z. Gilman. 1993. DNA bending and orientation-dependent function of YY1 in the c-fos promoter. Genes Dev. 7:2497–2509.
  • Nguyen, N., X. Zhang, N. Olashaw, and E. Seto. 2004. Molecular cloning and functional characterization of the transcription factor YY2. J. Biol. Chem. 279:25927–25934.
  • Rothman-Denes, L. B., X. Dai, E. Davydova, R. Carter, and K. Kazmiercak. 1998. Transcriptional regulation by DNA structural transitions and single-stranded DNA bending motifs. Cold Spring Harbor Symp. Quant. Biol. 63:63–73.
  • Schwanbeck, R., G. Manfioletti, and J. Wisniewski. 2000. Architecture of high mobility group protein I-C · DNA complex and its perturbation upon phosphorylation by Cdc2 kinase. J. Biol. Chem. 275:1793–1801.
  • Shestakova, E., M. T. Bandu, J. Doly, and E. Bonnefoy. 2001. Inhibition of histone deacetylation induces constitutive derepression of the beta interferon promoter and confers antiviral activity. J. Virol. 75:3444–3452.
  • Shi, Y., J. S. Lee, and K. M. Galvin. 1997. Everything you have ever wanted to know about Yin Yang 1. Biochim. Biophys. Acta 1332:F49–F66.
  • von Kries, J. P., L. Phi-Van, S. Diekmann, and W. H. Strätling. 1990. A non-curved chicken lysozyme 5′ matrix attachment site is 3′ followed by a strongly curved DNA sequence. Nucleic Acids Res. 18:3881–3885.
  • Weill, L., E. Shestakova, and E. Bonnefoy. 2003. Transcription factor YY1 binds to the murine beta interferon promoter and regulates its transcriptional capacity with a dual activator/repressor role. J. Virol. 77:2903–2914.
  • Wisniewski, J. R., and R. Schwanbeck. 2000. High mobility group I/Y: multifunctional chromosomal proteins causally involved in tumor progression and malignant transformation. Int. J. Mol. Med. 6:409–419.
  • Yao, Y. L., W. M. Yang, and E. Seto. 2001. Regulation of transcription factor YY1 by acetylation and deacetylation. Mol. Cell. Biol. 21:5979–5991.
  • Yie, J., M. Merika, N. Munshi, G. Chen, and D. Thanos. 1999. The role of HMG I(Y) in the assembly and function of the IFN-β enhanceosome. EMBO J. 18:3074–3089.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.