1
Views
7
CrossRef citations to date
0
Altmetric
Chromosome Structure and Dynamics

Drosophila Scaffold-Attached Regions Bind Nuclear Scaffolds and Can Function as ARS Elements in Both Budding and Fission Yeasts

&
Pages 5442-5454 | Received 22 Mar 1990, Accepted 05 Jul 1990, Published online: 31 Mar 2023

Literature Cited

  • Abraham, J., K. A. Nasmyth, J. N. Strathern, A. J. S. Klar, and J. B. Hicks. 1984. Regulation of mating type information in yeast. Negative control requiring sequences both 5′ and 3′ to the regulated region. J. Mol. Biol. 176:307-331.
  • Adachi, Y., E. Käs, and U. K. Laemmli. 1989. Preferential, cooperative binding of DNA topoisomerase II to scaffold-associated regions. EMBO J. 8:3997-4006.
  • Aguinaga, M. P., C. E. Kiper, and M. S. Valenzuela. 1987. Enriched autonomously replicating sequences in a nuclear matrix-DNA complex isolated from synchronized HeLa cells. Biochem. Biophys. Res. Commun. 144:1018-1024.
  • Amati, B. B., and S. M. Gasser. 1988. Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold. Cell 54:967-978.
  • Bouton, A. H., and M. M. Smith. 1986. Fine-structure analysis of the DNA sequence requirements for autonomous replication of Saccharomyces cerevisiae plasmids. Mol. Cell. Biol. 6:2354-2363.
  • Brewer, B. J., and W. L. Fangman. 1987. The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51:463-471.
  • Brewer, B. J., and W. L. Fangman. 1988. A replication fork barrier at the 3′ end of yeast ribosomal RNA genes. Cell 55:637-643.
  • Broach, J. R., Y. Y. Li, J. Feldman, M. Jayaram, J. Abraham, K. A. Nasmyth, and J. B. Hicks. 1984. Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Quant. Biol. 47:1165-1173.
  • Brun, C., Q. Dang, and R. Miassod. 1990. Studies on an 800-kilobase stretch of the Drosophila X chromosome: comapping of a subclass of scaffold-attached regions with sequences able to replicate autonomously in Saccharomyces cerevisiae. Mol. Cell. Biol. 10:5455-5463.
  • Buongiorno-Nardelli, M., G. Micheli, M. T. Carri, and M. Marilley. 1982. A relationship between replicon size and supercoiled loop domains in the eukaryotic genome. Nature (London) 298:100-102.
  • Carbon, J., and L. Clarke. 1984. Structural and functional analysis of a yeast centromere (CEN3). J. Cell Sci. Suppl. 1:43-58.
  • Cardenas, M. E., T. Laroche, and S. M. Gasser. 1990. The composition and morphology of yeast nuclear scaffolds. J. Cell Sci. 96:439-450.
  • Cockerill, P. N., and W. T. Garrard. 1986. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites. Cell 44:273-282.
  • Cockerill, P. N., and W. T. Garrard. 1986. Chromosomal loop anchorage sites appear to be evolutionarily conserved. FEBS Lett. 204:5-7.
  • Dijkwel, P. A., and J. L. Hamlin. 1988. Matrix attachment regions are positioned near replication initiation sites, genes, and an interamplicon junction in the amplified dihydrofolate reductase domain of Chinese hamster ovary cells. Mol. Cell. Biol. 8:5398-5409.
  • Dijkwel, P. A., P. W. Wenink, and J. Poddighe. 1986. Permanent attachment of replication origins to the nuclear matrix in BHK cells. Nucleic Acids Res. 14:3241-3249.
  • Dingman, C. W. 1974. Bidirectional chromosome replication: some topological considerations. J. Theor. Biol. 43:187-195.
  • Edenberg, H. J., and J. A. Huberman. 1975. Eukaryotic chromosome replication. Annu. Rev. Genet. 9:245-284.
  • Gasser, S. M., B. B. Amati, M. E. Cardenas, and J. F. X. Hofmann. 1989. Studies on scaffold attachment sites and their relation to genome function, p. 57-96. In K. Jeon (ed.), IRC reviews in cytology. Academic Press, Inc.. New York.
  • Gasser, S. M., and U. K. Laemmli. 1986. Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 46:521-530.
  • Gasser, S. M., and U. K. Laemmli. 1987. A glimpse at chromosomal order. Trends Genet. 3:16-22.
  • Goldman, M. A. 1988. The chromatin domain as a unit of gene regulation. BioEssays 9:50-55.
  • Goldschmidt-Clermont, M. 1980. Two genes for the major heat-shock protein of Drosophila melanogaster arranged as an inverted repeat. Nucleic Acids Res. 8:235-252.
  • Grimm, C., and J. Kohli. 1988. Observations on integrative transformation in Schizosaccharomyces pombe. Mol. Gen. Genet. 215:87-93.
  • Hanahan, D. 1985. Techniques for transformation of E. coli, p. 109-135. In D. M. Glover (ed.), DNA cloning. IRL Press, Oxford.
  • Handeli, S., A. Klar, M. Meuth, and H. Cedar. 1989. Mapping replication units in animal cells. Cell 57:909-920.
  • Heck, M. M. S., and A. C. Spradling. 1990. Multiple replication origins are used during Drosophila chorion gene amplification. J. Cell Biol. 110:903-914.
  • Heyer, W. D., M. Sipiczki, and J. Kohli. 1986. Replicating plasmids in Schizosaccharomyces pombe: improvement of symmetric segregation by a new genetic element. Mol. Cell. Biol. 6:80-89.
  • Holm, C., D. W. Meeks-Wagner, W. L. Fangman, and D. Botstein. 1986. A rapid, efficient method for isolating DNA from yeast. Gene 42:169-173.
  • Homberger, H. P. 1989. Bent DNA is a structural feature of scaffold-attached regions in Drosophila melanogaster interphase nuclei. Chromosoma 98:99-104.
  • Huberman, J. A., L. D. Spotila, K. A. Nawotka, S. M. El-Assouli, and L. R. Davis. 1987. The in vivo replication origin of the yeast. Cell 51:473-481.
  • Huberman, J. A., J. Zhu, L. R. Davis, and C. S. Newlon. 1988. Close association of a DNA replication origin and an ARS element on chromosome III of the yeast, Saccharomyces cerevisiae. Nucleic Acids Res. 16:6373-6384.
  • Huysmans, E., E. Dams, A. Vandenberghe, and R. De Wachter. 1983. The nucleotide sequences of the 5S rRNAs of four mushrooms and their use in studying the phylogenetic position of basidiomycetes among the eukaryotes. Nucleic Acids Res. 11:2871-2879.
  • Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163-168.
  • Izaurralde, E., E. Kas, and U. K. Laemmli. 1989. Highly preferential nucleation of histone Hl assembly on scaffold-associated regions. J. Mol. Biol. 210:573-585.
  • Izaurralde, E., J. Mirkovitch, and U. K. Laemmli. 1988. Interaction of DNA with nuclear scaffolds in vitro. J. Mol. Biol. 200:111-125.
  • Kas, E., E. Izaurralde, and U. K. Laemmli. 1989. Specific inhibition of DNA binding to nuclear scaffolds and histone Hl by distamycin. J. Mol. Biol. 210:587-599.
  • Kearsey, S. 1983. Analysis of sequences conferring autonomous replication in bakers yeast. EMBO J. 2:1571-1575.
  • Kearsey, S. 1984. Structural requirements for the function of a yeast chromosomal replicator. Cell 37:299-307.
  • Kipling, D., and S. E. Kearsey. 1990. Reversion of autonomously replicating sequence mutations in Saccharomyces cerevisiae: creation of a eucaryotic replication origin within procaryotic vector DNA. Mol. Cell. Biol. 10:265-272.
  • Kurata, N., and T. Marunouchi. 1988. Retention of autonomous replicating plasmids in cultured Drosophila cells. Mol. Gen. Genet. 213:359-363.
  • Leu, T. H., and J. L. Hamlin. 1989. High-resolution mapping of replication fork movement through the amplified dihydrofolate reductase domain in CHO cells by in-gel renaturation analysis. Mol. Cell. Biol. 9:523-531.
  • Linskens, M. H. K., and J. A. Huberman. 1988. Organization of replication in ribosomal DNA. Mol. Cell. Biol. 8:4927-4935.
  • Losson, R., and F. Lacroute. 1983. Plasmids carrying the yeast OMP decarboxylase structural and regulatory genes: transcription regulation in a foreign environment. Cell 32:371-377.
  • Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Maundrell, K., A. Hutchison, and S. Shall. 1988. Sequence analysis of ARS elements in fission yeast. EMBO J. 7:2203-2209.
  • Maundrell, K., A. P. H. Wright, M. Piper, and S. Shall. 1985. Evaluation of heterologous ARS activity in S. cerevisiae using cloned DNA from S. pombe. Nucleic Acids Res. 13:3711-3722.
  • McReady, S. J., J. Godwin, D. W. Mason, I. A. Brazell, and P. R. Cook. 1980. DNA is replicated at the nuclear cage. J. Cell Sci. 46:365-386.
  • Mirkovitch, J., S. M. Gasser, and U. K. Laemmli. 1988. Scaffold attachment of DNA loops in metaphase chromosomes. J. Mol. Biol. 200:101-110.
  • Mirkovitch, J., M. E. Mirault, and U. K. Laemmli. 1984. Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell 39:223-232.
  • Murray, A. W., and J. W. Szostack. 1984. Pedigree analysis of plasmid segregation in yeast. Cell 34:961-970.
  • Nelson, H. C. M., J. T. Finch, B. F. Luisi, and A. Klug. 1987. The structure of an oligo(dA)-oligo(dT) tract and its biological implications. Nature (London) 330:221-226.
  • Nelson, W. G., K. J. Pienta, E. R. Barrack, and D. S. Coffey. 1986. The role of the nuclear matrix in the organization and function of DNA. Annu. Rev. Biophys. Biophys. Chem. 15:457-475.
  • Newlon, C. S. 1988. Yeast chromosome replication and segregation. Microbiol. Rev. 52:568-601.
  • Newlon, C. S., R. P. Green, K. J. Hardeman, K. E. Kim, L. R. Lipchitz, T. G. Palzkill, S. Synn, and S. T. Woody. 1986. Structure and organization of yeast chromosome III. Mol. Cell. Biol. 33:211-223.
  • Palzkill, T. G., and C. S. Newlon. 1988. A yeast replication origin consists of multiple copies of a small conserved sequence. Cell 53:441-450.
  • Pardoll, D. M., B. Vogelstein, and D. S. Coffey. 1980. A fixed site of DNA replication in eucaryotic cells. Cell 19:527-536.
  • Pérez-Ortin, J. E., E. Matallana, and L. Franco. 1989. Chromatin structure of yeast genes. Yeast 5:219-238.
  • Phivan, L., and W. Strätling. 1988. The matrix attachment regions of the chicken lysozyme gene co-map with the boundaries of the chromatin domain. EMBO J. 7:655-664.
  • Razin, S. V., M. G. Kekelidze, E. M. Lukanidin, K. Scherrer, and G. P. Georgiev. 1986. Replication origins are attached to the nuclear skeleton. Nucleic Acids Res. 14:8189-8207.
  • Rose, M. D., F. Winston, and P. Hieter. 1988. Laboratory course manual for methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Russell, P., and P. Nurse. 1987. The mitotic inducer niml + functions in a regulatory network of protein kinase homologs controlling the initiation of mitosis. Cell 49:569-576.
  • Sherman, F., G. Fink, and J. B. Hicks. 1986. Laboratory course manual for methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Snyder, M., A. R. Buchman, and R. W. Davis. 1986. Bent DNA at a yeast autonomously replicating sequence. Nature (London) 324:87-89.
  • Sorger, P. K., M. J. Lewis, and H. R. B. Pelham. 1987. Heat shock factor is regulated differently in yeast and HeLa cells. Nature (London) 329:81-84.
  • Sorger, P. K., and H. R. B. Pelham. 1988. Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation. Cell 54:855-864.
  • Stinchcomb, D. T., C. Mann, E. Selker, and R. W. Davis. 1981. DNA sequences that allow the replication and segregation of yeast chromosomes. Mol. Cell. Biol. 22:473-488.
  • Surdej, P., C. Got, R. Rosset, and R. Miassod. 1990. Supragenic loop organization. Mapping in Drosophila embryos of scaffold-associated regions on a 800-kb DNA continuum from the 14B-15B first chromosomal region. Nucleic Acids Res. 18:3713-3722.
  • Sykes, R. C., D. Lin, S. J. Hwang, P. E. Framson, and A. C. Chinault. 1988. Yeast ARS function and nuclear matrix association coincide in a short sequence from the human HPRT locus. Mol. Gen. Genet. 212:301-309.
  • Tschumper, G., and J. Carbon. 1980. Sequence of a yeast DNA fragment containing a chromosomal replicator and the TRP1 gene. Gene 10:157-166.
  • Umek, R. M., M. H. K. Linskens, D. Kowalski, and J. A. Huberman. 1989. New beginnings in studies of eukaryotic DNA replication origins. Biochim. Biophys. Acta 1007:1-14.
  • Van der Velden, H. M. W., and F. Wanka. 1987. The nuclear matrix--its role in the spatial organization and replication of eukaryotic DNA. Mol. Biol. Rep. 12:69-77.
  • Van Holde, K. E. 1988. Chromatin. A. Rich (ed.), Chromatin. Springer-Verlag, New York.
  • Williams, J. S., T. T. Eckdahl, and J. N. Anderson. 1988. Bent DNA functions as a replication enhancer in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:2763-2769.
  • Wright, A., K. Maundrell, W. D. Heyer, D. Beach, and P. Nurse. 1986. Vectors for the construction of gene banks and the integration of cloned genes in Schizosaccharomyces pombe and Saccharomyces cerevisiae. Plasmid 15:156-158.
  • Wright, A. P., K. Maundrell, and S. Shall. 1986. Transformation of Schizosaccharomyces pombe by non-homologous , unstable integration of plasmids in the genome. Curr. Genet. 10:503-508.
  • Zannis-Hadjopoulos, M., M. Persico, and R. G. Martin. 1981. The remarkable instability of replication loops provides a general method for the isolation of origins of DNA replication. Cell 27:155-163.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.