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Chromosome Structure and Dynamics

Purification of RIP60 and RIP100, Mammalian Proteins with Origin-Specific DNA-Binding and ATP-Dependent DNA Helicase Activities

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Pages 6225-6235 | Received 21 Jun 1990, Accepted 07 Sep 1990, Published online: 31 Mar 2023

LITERATURE CITED

  • Anachkova, B., and J. L. Hamlin. 1989. Replication of the amplified dihydrofolate reductase domain in CHO cells may initiate at two distinct sites, one of which is a repetitive sequence element. Mol. Cell. Biol. 9:532–540.
  • Anderson, J. N. 1986. Detection, sequence patterns, and function of unusual DNA structures. Nucleic Acids Res. 14:8513–8533.
  • Angel, P., M. Imagawa, R. Chui, B. Stein, R. D. Imbra, H. J. Rahmsorf, C. Jonat, P. Herrlich, and M. Karin. 1987. Phorbolester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor. Cell 49:729–739.
  • Baker, T. A., B. E. Funnell, and A. Kornberg. 1987. Helicase action of dnaB protein during replication from the E. coli chromosomal origin in vitro. J. Biol. Chem. 262:6877–6885.
  • Baker, T. A., and A. Kornberg. 1988. Transcriptional activation of initiation of replication from the E. coli chromosomal origin: an RNA-DNA hybrid near oriC. Cell 55:113–123.
  • Bramhill, D., and A. Kornberg. 1988. Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell 52:743–745.
  • Bramhill, D., and A. Kornberg. 1988. A model for initiation at origins of DNA replication. Cell 54:915–918.
  • Buchman, A. R., W. J. Kimmerly, J. Rine, and R. D. Kornberg. 1988. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:210–225.
  • Burhans, W. C., J. E. Selegue, and N. H. Heintz. 1986. Isolation of the origin of replication associated with the amplified Chinese hamster dihydrofolate reductase domain. Proc. Natl. Acad. Sci. USA 83:7790–7794.
  • Burhans, W. C., L. T. Vassilev, M. S. Caddie, N. H. Heintz, and M. L. De Pamphilis. 1990. Identification of an origin of bidirectional DNA replication in mammalian chromosomes. Cell 62:955–965.
  • Caddie, M. S., L. Dailey, and N. H. Heintz. 1990. RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication. Mol. Cell. Biol. 10:6236–6243.
  • Caddie, M. S., R. H. Lussier, and N. H. Heintz. 1990. Intramolecular DNA triplexes, bent DNA, and DNA unwinding elements in the initiation region of a amplified dihydrofolate reductase replicon. J. Mol. Biol. 211:19–33.
  • Celniker, S. E., K. Sweder, F. Srienc, J. E. Bailey, and J. L. Campbell. 1984. Deletion mutations affecting autonomously replicating sequence ARSI of Saccharomyces cerevisiae. Mol. Cell Biol. 4:2455–2466.
  • Chodosh, L. A., R. W. Carthew, and P. A. Sharp. 1986. A single polypeptide possesses the binding and transcription activities of the adenovirus major late transcription factor. Mol. Cell. Biol. 6:4723–4733.
  • Dailey, L., S. Roberts, and N. Heintz. 1988. Purification of the human histone H4 gene-specific transcription factors H4TF-1 and H4TF-2. Genes Dev. 2:1700–1712.
  • Dean, F. B., P. Bullock, Y. Mirakami, C. R. Wobbe, L. Weissbach, and J. Hurwitz. 1987. Simian virus 40 (SV40) DNA replication: SV40 large T antigen unwinds DNA containing the SV40 origin of replication. Proc. Natl. Acad. Sci. USA 84:16–20.
  • Deb, S., A. DeLucia, A. Koff, S. Tsui, and P. Tegtmeyer. 1986. The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication. Mol. Cell. Biol. 6:4578–4584.
  • DePamphillis, M. L. 1988. Transcriptional elements as components of eukaryotic origins of DNA replication. Cell 52:635–638.
  • Digman, J. D., P. L. Martin, B. S. Shastry, and R. G. Roeder. 1983. Eucaryotic gene transcription with purified components. Methods Enzymol. 101:582–598.
  • Eckdahl, T. T., and J. N. Anderson. 1990. Conserved DNA structures in origins of replication. Nucleic Acids Res. 18:1609–1612.
  • Fried, M., and D. M. Crothers. 1981. Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res. 9:6505–6525.
  • Galas, D., and A. Schmitz. 1978. DNase footprinting: a simple method for the detection of protein-DNA binding specificity. Nucleic Acids Res. 5:3157–3170.
  • Garner, M. M., and A. Revzin. 1981. A gel electrophoresis method for quantifying the binding proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system. Nucleic Acids Res. 9:3047–3060.
  • Handeli, S., A. Klar, M. Meuth, and H. Cedar. 1989. Mapping replication units in animal cells. Cell 57:909–920.
  • Heintz, N. H., and J. L. Hamlin. 1982. An amplified chromosomal sequence that includes the gene for dihydrofolate reductase initiates replication within specific restriction fragments. Proc. Natl. Acad. Sci. USA 79:4083–4087.
  • Heintz, N. H., J. D. Milbrandt, K. S. Greisen, and J. L. Hamlin. 1983. Cloning of the initiation region of a mammalian chromosomal replicon. Nature (London) 302:439–441.
  • Heintz, N. H., and B. W. Stillman. 1988. Nuclear DNA synthesis in vitro is mediated via stable replication forks assembled in a temporally specific fashion in vivo. Mol. Cell. Biol. 8:1923–1931.
  • Holmes, S. G., and M. M. Smith. 1989. Interaction of the H4 autonomously replicating sequence core consensus sequence and its 3′-flanking domain. Mol. Cell. Biol. 9:5464–5472.
  • Kearsey, S. 1984. Structural requirements for the function of a yeast chromosomal replicator. Cell 37:299–307.
  • Kipling, D., and S. E. Kearsey. 1990. Reversion of autonomously replicating sequence mutations in Saccharomyces cerevisiae: creation of a eucaryotic replication origin within procaryotic vector DNA. Mol. Cell. Biol. 10:265–272.
  • Kowalski, D. 1984. Changes in site specificity of single-strandspecific endonucleases on supercoiled PM2 DNA with temperature and ionic environment. Nucleic Acids Res. 12:7071–7086.
  • Kowalski, D., and M. Eddy. 1989. The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin. EMBO J. 8:4335–4344.
  • Lahue, E. E., and S. W. Matson. 1988. Escherichia coli DNA helicase I catalyzes a unidirectional and highly processive unwinding reaction. J. Biol. Chem. 263:3208–3215.
  • Laundon, C. H., and J. D. Griffith. 1988. Curved helix segments can uniquely orient the topology of supertwisted DNA. Cell 52:545–549.
  • Leu, T.-H., and J. L. Hamlin. 1989. High-resolution mapping of replication fork movement through the amplified dihydrofolate reductase domain in CHO cells by in-gel renaturation analysis. Mol. Cell. Biol. 9:523–531.
  • Maxam, A. M., and W. Gilbert. 1980. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65:499–560.
  • Milbrandt, J. D., N. H. Heintz, W. C. White, S. M. Rothman, and J. L. Hamlin. 1981. Methotrexate-resistant Chinese hamster ovary cells have amplified a 135-kilobase region that includes the dihydrofolate reductase gene. Proc. Natl. Acad. Sci. USA 78:6043–6047.
  • Mukherjee, S., H. Erickson, and D. Bastia. 1988. Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA. Proc. Natl. Acad. Sci. USA 85:6287–6291.
  • Olivo, P. D., N. J. Nelson, and M. D. Challberg. 1988. Herpes simplex virus DNA replication: the UL9 gene encodes an origin-binding protein. Proc. Natl. Acad. Sci. USA 85:5414–5418.
  • O'Neill, E. A., C. Fletcher, C. R. Burrow, N. Heintz, R. G. Roeder, and T. J. Kelly. 1988. Transcription factor OTF-1 is functionally identical to the DNA replication factor NF-III. Science 241:1210–1213.
  • Prives, C., Y. Murakami, F. G. Kern, W. Falk, C. Basilico, and J. Hurwitz. 1987. DNA sequence requirements for replication of polyomavirus DNA in vivo and in vitro. Mol. Cell. Biol. 5:3694–3704.
  • Ramstein, J., and R. Lavery. 1988. Energetic coupling between DNA bending and base pair opening. Proc. Natl. Acad. Sci. USA 85:7231–7235.
  • Reisman, D., J. Yates, and B. Sugden. 1985. A putative origin of replication of plasmids derived from Epstein-Barr virus is composed to two cis-acting components. Mol. Cell. Biol. 5:1822–1832.
  • Rosenfeld, P. J., and T. J. Kelly. 1986. Purification of nuclear factor I by DNA recognition site affinity chromatography. J. Biol. Chem. 261:1398–1408.
  • Schnos, M., K. Zahn, R. B. Inman, and F. R. Blattner. 1988. Initiation protein induced helix destabilization at the lambda origin: a prepriming step in DNA replication. Cell 52:385–395.
  • Snyder, M., A. R. Buchman, and R. W. Davis. 1986. Bent DNA at a yeast autonomously replicating sequence. Nature (London) 324:87–89.
  • Solomon, M. J., F. Strauss, and A. Varshavsky. 1986. A mammalian high mobility group protein recognizes any stretch of six A-T base pairs in duplex DNA. Proc. Natl. Acad. Sci. USA 83:1276–1280.
  • Sopta, M., Z. F. Burton, and J. Greenblatt. 1989. Structure and associated DNA helicase activity of a general transcription initiation factor that binds to RNA polymerase II. Nature (London) 341:410–414.
  • Stahl, H., P. Droge, and R. Knippers. 1986. DNA helicase activity of SV40 large tumor antigen. EMBO J. 5:1939–1944.
  • Umek, R. M., and D. Kowalski. 1987. Yeast regulatory sequences preferentially adopt a non-B conformation in supercoiled DNA. Nucleic Acids Res. 15:4467–4480.
  • Umek, R. M., and D. Kowalski. 1988. The ease of DNA unwinding as a determinant of initiation at yeast replication origins. Cell 52:559–567.
  • Umek, R. M., M. H. K. Linskens, D. Kowalski, and J. A. Huberman. 1989. New beginnings in studies of eukaryotic DNA replication origins. Biochim. Biophys. Acta 1007:1–14.
  • Veldman, G. M., S. Lupton, and R. Kamen. 1985. Polyomavirus enhancer contains multiple redundant sequence elements that activate both DNA replication and gene expression. Mol. Cell. Biol. 5:649–658.
  • Williams, J. S., T. T. Eckdahl, and J. N. Anderson. 1988. Bent DNA functions as a replication enhancer in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:2763–2769.
  • Wu, C., S. Wilson, B. Walker, I. David, T. Paisley, V. Zimarina, and H. Ueda. 1987. Purification and properties of Drosophila heat shock activator protein. Science 258:1247–1253.
  • Zahn, K., and F. Blattner. 1985. Sequence-induced DNA curvature at the bacteriophage lambda origin of replication. Nature (London) 317:451–453.
  • Zahn, K., and F. Blattner. 1987. Direct evidence for DNA bending at the lambda replication origin. Science 236:416–422.
  • Zweib, C., J. Kim, and S. Adhya. 1989. DNA bending by negative regulatory proteins: gal and lac repressors. Genes Dev. 3:606–611.

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