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DNA Dynamics and Chromosome Structure

Single-Stranded DNA as a Recombination Substrate in Plants as Assessed by Stable and Transient Recombination Assays

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Pages 329-336 | Received 30 Jul 1991, Accepted 07 Oct 1991, Published online: 01 Apr 2023

References

  • Ayares, D., L. Chekuri, K.-Y. Song, and R. Kucherlapati. 1986. Sequence homology requirements for intermolecular recombination in mammalian cells. Proc. Natl. Acad. Sci. USA 83:5199–5203.
  • Baur, M., I. Potrykus, and J. Paszkowski. 1990. Intermolecular homologous recombination in plants. Mol. Cell. Biol. 10:492–500.
  • Bilang, R., S. Lida, A. Peterhans, I. Potrykus, and J. Paszkowski. 1991. The 3'-terminal region of the hygromycin-B-resistance gene is important for its activity in Escherichia coli and Nicotiana tabacum. Gene 100:247–250.
  • Brenner, D. A., A. C. Smigocki, and R. D. Camerini-Otero. 1985. Effect of insertions, deletions, and double-strand breaks on homologous recombination in mouse L cells. Mol. Cell. Biol. 5:684–691.
  • Chomczynski, P., and N. Sacchi. 1987. Single step method of RNA isolation by acid guanidium thiocyanate-phenol-chloro- form extraction. Anal. Biochem. 162:156–159.
  • Cox, M. M., and I. R. Lehman. 1987. Enzymes of general recombination. Annu. Rev. Biochem. 56:229–262.
  • Criscuolo Waldman, B., and A. S. Waldman. 1990. Illegitimate and homologous recombination in mammalian cells: differential sensitivity to an inhibitor of poly(ADP-ribosylation). Nucleic Acids Res. 18:5981–5988.
  • Czernilofsky, A. P., R. Hain, L. Herrera-Estrella, H. Lörz, E. Goyvaerts, B. Baker, and J. Schell. 1986. Fate of selectable marker DNA integrated into the genome of Nicotiana tabacum. DNA 5:101–113.
  • Eisen, A., and R. D. Camerini-Otero. 1988. A recombinase from Drosophila melanogaster embryos. Proc. Natl. Acad. Sci. USA 85:7481–7485.
  • Feinberg, A. P., and B. Vogelstein. 1983. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:6–13.
  • Finn, G. K., B. W. Kurz, R. Z. Cheng, and R. J. S. Reis. 1989. Homologous plasmid recombination is elevated in immortally transformed cells. Mol. Cell. Biol. 9:4009–4017.
  • Furner, I. J., E. S. Higgins, and A. W. Berrington. 1989. Single-stranded DNA transforms plant protoplasts. Mol. Gen. Genet. 220:65–68.
  • Goodall, G. J., and W. Filipowicz. 1989. The AU-rich sequences present in introns of plant nuclear pre-mRNAs are required for splicing. Cell 58:473–483.
  • Goyon, C., and G. Faugeron. 1989. Targeted transformation of Ascobolus immersus and de novo methylation of the resulting duplicated DNA sequences. Mol. Cell. Biol. 9:2818–2827.
  • Hotta, Y., S. Tabata, R. A. Bouchard, R. Pinon, and H. Stern. 1985. General recombination mechanisms in extracts of meiotic cells. Chromosoma 93:140–151.
  • Jessberger, R., and P. Berg. 1991. Repair of deletions and double-strand gaps by homologous recombination in a mammalian in vitro system. Mol. Cell. Biol. 11:445–457.
  • Kao, K. N., and M. R. Michayluk. 1975. Nutritional requirements for growth of Vicia hajastana cells at very low population density in liquid medium. Planta 126:105–110.
  • Kitamura, Y., H. Yoshikura, and I. Kobayashi. 1990. Homologous recombination in a mammalian plasmid. Mol. Gen. Genet. 222:185–191.
  • Kmiec, E., and W. K. Holloman. 1982. Homologous pairing of DNA molecules promoted by a protein from Ustilago. Cell 29:367–374.
  • Kmiec, E., and W. K. Holloman. 1984. Synapsis promoted by Ustilago reel protein. Cell 36:593–598.
  • Kolodner, R., D. H. Evans, and P. T. Morrison. 1987. Purification and characterization of an activity from Saccharomyces cerevisiae that catalyzes homologous pairing and strand exchange. Proc. Natl. Acad. Sci. USA 84:5560–5564.
  • Kowalczykowski, S. C. 1987. Mechanistic aspects of the DNA strand exchange activity of E. coli rec A protein. Trends Biochem. Sci. 12:141–145.
  • Lin, F.-L. M., K. M. Sperle, and N. L. Sternberg. 1984. Model for homologous recombination during transfer of DNA into mouse L cells: role of DNA ends in the recombination process. Mol. Cell. Biol. 4:1020–1034.
  • Lin, F.-L. M., K. M. Sperle, and N. L. Sternberg. 1987. Extrachromosomal recombination in mammalian cells as studied with single- and double-stranded DNA substrates. Mol. Cell. Biol. 7:129–140.
  • Maliga, P., A. Breznovitz, and L. Marton. 1973. Streptomycin resistant plants from callus cultures of tobacco. Nature (London) New Biol. 244:29–30.
  • Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Mead, D. A., E. Szczesna-Skorupa, and B. Kemper. 1986. Single-stranded DNA "blue" T7 promoter plasmids: a versatile tandem promoter system for cloning and protein engineering. Protein Eng. 1:67–74.
  • Meselson, M. S., and C. M. Radding. 1975. A general model for genetic recombination. Proc. Natl. Acad. Sci. USA 72:358–361.
  • Messing, J. 1983. New M13 vectors for cloning. Methods Enzymol. 101:20–78.
  • Murray, H. G., and W. F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321–4326.
  • Nagy, J. L., and P. Maliga. 1976. Callus induction and plant regeneration from mesophyll protoplasts of Nicotiana sylvestris. Z. Pflanzenphysiol. 78:453–455.
  • Negrutiu, L., R. D. Shillito, I. Potrykus, G. Biasini, and F. Sala. 1987. Hybrid genes in the analysis of transformation conditions. I. Setting up a simple method for direct gene transfer in plant protoplasts. Plant Mol. Biol. 8:363–373.
  • Offringa, R., M. J. A. de Groot, H. J. Haagsman, M. P. Does, P. J. M. van den Elzen, and P. J. J. Hooykaas. 1990. Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation. EMBO J. 9:3077–3084.
  • Paszkowski, J., M. Baur, A. Bogucki, and I. Potrykus. 1988. Gene targeting in plants. EMBO J. 7:4021–4026.
  • Paszkowski, J., R. D. Shillito, M. W. Saul, V. Mandák, T. Hohn, B. Hohn, and I. Potrykus. 1984. Direct gene transfer to plants. EMBO J. 3:2717–2722.
  • Peterhans, A., and J. Paszkowski. 1990. Prospects for homologous recombination in plants, p. 155–170. In Horticultural biotechnology. Wiley-Liss, Inc., New York.
  • Peterhans, A., H. Schliipmann, C. Basse, and J. Paszkowski. 1990. Intrachromosomal recombination in plants. EMBO J. 9:3437–3445.
  • Pietrzak, M., R. D. Shillito, T. Hohn, and I. Potrykus. 1986. Expression in plants of two bacterial antibiotic resistance genes after protoplast transformation with a new plant expression vector. Nucleic Acids Res. 14:5857–5868.
  • Podhajaska, A. J., and W. Szybalski. 1985. Conversion of the FokI endonuclease to a universal restriction enzyme: cleavage of phage M13mp7 DNA at predetermined sites. Gene 40:175–182.
  • Puchta, H., and B. Hohn. The mechanisms of extrachromosomal homologous DNA recombination in plant cells. Mol. Gen. Genet., in press.
  • Puchta, H., and B. Hohn. A transient assay in plant cells reveals a positive correlation between extrachromosomal recombination rates and length of homologous overlap. Nucleic Acids Res. 19:2693–2700.
  • Rauth, S., K.-Y. Song, D. Ayares, L. Wallace, P. D. Moore, and R. Kucherlapati. 1986. Transfection and homologous recombination involving single-stranded DNA substrates in mammalian cells and nuclear extracts. Proc. Natl. Acad. Sci. USA 83:5587–5591.
  • Rodenburg, K. W., M. J. A. de Groot, R. A. Schilperoort, and P. J. J. Hooykaas. 1989. Single-stranded DNA used as an efficient new vehicle for transformation of plant protoplasts. Plant Mol. Biol. 13:711–719.
  • Seidman, M. M. 1987. Intermolecular homologous recombination between transfected sequences in mammalian cells is primarily nonconservative. Mol. Cell. Biol. 7:3561–3565.
  • Simon, J. R., and P. D. Moore. 1987. Homologous recombination between single-stranded DNA and chromosomal genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 7:2329–2334.
  • Subramani, S., and J. Rubnitz. 1985. Recombination events after infection and stable integration of DNA into mouse cells. Mol. Cell. Biol. 5:659–666.
  • Sweigert, S. E., and D. Carroll. 1990. Repair and recombination of X-irradiated plasmids in Xenopus laevis oocytes. Mol. Cell. Biol. 10:5849–5856.
  • Szostak, J. W., T. L. Orr-Weaver, R. J. Rothstein, and F. H. Stahl. 1983. The double strand break repair model for recombination. Cell 33:25–35.
  • Wake, C. T., F. Vernaleone, and J. H. Wilson. 1985. Topological requirements for homologous recombination among DNA molecules transfected into mammalian cells. Mol. Cell. Biol. 5:2080–2089.
  • Wong, E. A., and M. R. Capecchi. 1986. Analysis of homologous recombination in cultured mammalian cells in transient expression and stable transformation assays. Somatic Cell Mol. Genet. 12:63–72.

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