SEN1, a Positive Effector of tRNA-Splicing Endonuclease in Saccharomyces cerevisiae

REFERENCES

• Boeke, J. D., F. LaCroute, and G. F. Fink. 1984. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol. Gen. Genet. 197:345–346.
   PubMedGoogle Scholar
• Bourne, H. R., D. A. Sanders, and F. McCormick. 1990. The GTPase superfamily: a conserved switch for diverse cell functions. Nature (London) 348:125–132.
   PubMed Web of Science ®Google Scholar
• Broek, D., T. Takashi, T. Michaeli, L. Levin, C. Birchmeier, M. Zoller, S. Powers, and M. Wigler. 1987. The S. cerevisiae CDC25 gene product regulates the RAS/adenylate cyclase pathway. Cell 48:789–799.
   PubMed Web of Science ®Google Scholar
• Burns, P. Α., A. J. E. Gordon, and B. W. Glickman. 1987. Influence of neighbouring base sequence on N-methyl-N′-N-nitrosoguanidine mutagenesis in the lacI gene of Escherichia coli. J. Mol. Biol. 194:385–390.
   PubMedGoogle Scholar
• Carroll, S., and A. Laughon. 1987. Production and purification of polyclonal antibodies to the foreign segment of β-galactosidase fusion proteins, p. 89–111. In D. M. Glover (ed.), DNA cloning, vol. III. IRL Press, Oxford.
   Google Scholar
• Cigan, Μ. Α., and T. F. Donahue. 1987. Sequence and structural features with translational initiator regions in yeast—a review. Gene 5:1–18.
   Google Scholar
• Clark, M. W., and J. Abelson. 1987. The subnuclear localization of tRNA in yeast. J. Cell Biol. 105:1515–1526.
   PubMedGoogle Scholar
• Culbertson, M. R., and M. Winey. 1989. Split tRNA genes and their gene products: a paradigm for the study of cell function and evolution. Yeast 5:405–427.
   PubMed Web of Science ®Google Scholar
• Dever, T. E., M. J. Glynias, and W. C. Merrick. 1987. GTP-binding domain: three consensus sequence elements with distinct spacing. Proc. Natl. Acad. Sci. USA 84:1814–1818.
   PubMed Web of Science ®Google Scholar
• Gaber, R., and M. R. Culbertson. 1982. Frameshift suppression in Saccharomyces cerevisiae. IV. New suppressors among spontaneous corevertants of the group II his4-106 and leu2-3 frameshift mutations. Genetics 101:345–367.
   PubMedGoogle Scholar
• Greene, J. M., and K. Struhl. 1988. Preparation and analysis of RNA, p. 4.6.1–4.6.13. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology, vol. 1. Greene Publishing Associates and Wiley-Interscience, New York.
   Google Scholar
• Guthrie, C., and J. Abelson. 1982. Organization and expression of tRNA genes in Saccharomyces cerevisiae, p. 487–528. In J. N. Strathern, E. W. Jones, and J. R. Broach (ed.), The molecular biology of the yeast Saccharomyces cerevisiae: metabolism and gene expression. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Hartwell, L. H. 1967. Macromolecular synthesis in temperature-sensitive mutants of yeast. J. Bacteriol. 93:1662–1670.
   PubMed Web of Science ®Google Scholar
• Heinrich, P. 1987. DNA sequencing, p. 7.3.1–7.3.21 In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology, vol. 1. Greene Publishing Associates and Wiley-Interscience, New York.
   Google Scholar
• Hendrick, J., and M. Culbertson. Unpublished data.
   Google Scholar
• Hill, J. E., A. M. Meyers, T. J. Koerner, and A. Tsagoloff. 1986. Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2:163–167.
   PubMed Web of Science ®Google Scholar
• Ho, C. K., R. Rauhut, U. Vijayraghavan, and J. Abelson. 1990. Accumulation of pre-tRNA splicing ‘2/3’ intermediates in a Saccharomyces cerevisiae mutant. EMBO J. 9:1245–1252.
   PubMedGoogle Scholar
• Hoffman, C. S., and F. Winston. 1987. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267–272.
   PubMed Web of Science ®Google Scholar
• Hopper, A. K. 1989. Genetic methods for the study of transacting genes involved in processing of precursors to yeast cytoplasmic tRNAs. Methods Enzymol. 181:400–420.
   Google Scholar
• Hopper, A. K., F. Banks, and V. Evangelidis. 1978. A yeast mutant which accumulates precursor tRNAs. Cell 14:211–219.
   PubMed Web of Science ®Google Scholar
• Hopper, A. K., L. D. Schultz, and R. A. Shapiro. 1980. Processing of intervening sequences: a new yeast mutant which fails to excise intervening sequences from precursor tRNAs. Cell 19:741–751.
   PubMed Web of Science ®Google Scholar
• Ito, H. Y., K. M. Fukada, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163–168.
   PubMed Web of Science ®Google Scholar
• Johnston, M., and R. W. Davis. 1984. Sequences that regulate the divergent GAL1-GAL 10 promoter in Saccharomyces cerevisiae. Mol. Cell. Biol. 4:1440–1448.
   PubMed Web of Science ®Google Scholar
• Kingston, R. E. 1989. Preparation and analysis of RNA, p. 4.8.1–4.8.3. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology, vol. 1. Greene Publishing Associates and Wiley-Interscience, New York.
   Google Scholar
• Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680–685.
   PubMed Web of Science ®Google Scholar
• Landschulz, W. H., P. F. Johnson, and S. L. McKnight. 1988. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240:1759–1763.
   PubMed Web of Science ®Google Scholar
• Leeds, P., S. W. Peltz, A. Jacobson, and M. R. Culbertson. 1991. The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev. 12:2303–2314.
   Google Scholar
• Leeds, P., J. M. Wood, B.-S. Lee, and M. R. Culbertson. 1992. Gene products that promote mRNA turnover in Saccharomyces cerevisiae. Mol. Cell. Biol. 12:2165–2177.
   PubMed Web of Science ®Google Scholar
• Lindquist, S. 1981. Regulation of protein synthesis during heat shock. Nature (London) 293:311–314.
   PubMed Web of Science ®Google Scholar
• Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Mooselehner, K., U. Muller, U. Karls, L. Hamann, and K. Harbers. 1991. Structure and expression of a gene encoding a putative GTP-binding protein identified by provirus integration in a transgenic strain. Mol. Cell. Biol. 11:886–893.
   PubMedGoogle Scholar
• Nehrbass, U., H. Kern, A. Mutvei, H. Horstmann, B. Marshallsay, and E. C. Hurt. 1991. NSP1: a yeast nuclear envelope protein localized at the nuclear pores exerts its essential function by its carboxy-terminal domain. Cell 61:979–989.
   Google Scholar
• O’Connor, J. P., and C. L. Peebles. 1991. In vivo pre-tRNA processing in Saccharomyces cerevisiae. Mol. Cell. Biol. 11:425–439.
   PubMedGoogle Scholar
• Orr-Weaver, T. L., J. W. Szostak, and R. J. Rothstein. 1981. Yeast transformation: a model system for the study of recombination. Proc. Natl. Acad. Sci. USA 78:6354–6358.
   PubMed Web of Science ®Google Scholar
• Oskaynak, E., and D. Putney. 1987. A unidirectional deletion technique for the generation of clones for sequencing. BioTechniques 5:770–773.
   Google Scholar
• Peebles, L. C., P. Gegenheimer, and J. Abelson. 1983. Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease. Cell 32:525–536.
   PubMed Web of Science ®Google Scholar
• Peebles, L. C., R. C. Ogden, G. Knapp, and J. Abelson. 1979. Splicing of yeast tRNA precursors: a two-stage reaction. Cell 18:27–35.
   PubMed Web of Science ®Google Scholar
• Phizicky, E. M., R. C. Schwartz, and J. Abelson. 1986. Saccharomyces cerevisiae tRNA ligase: purification of the protein and isolation of the structural gene. J. Biol. Chem. 261:2978–2986.
   PubMed Web of Science ®Google Scholar
• Rauhut, R., P. R. Green, and J. Abelson. 1990. Yeast tRNA-splicing endonuclease is a heterotrimeric enzyme. J. Biol. Chem. 265:18180–18184.
   PubMedGoogle Scholar
• Rauhut, R., C. Ho, and J. Abelson. Personal communication.
   Google Scholar
• Robbins, J., S. M. Dilworth, R. A. Laskey, and C. Dingwall. 1991. Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: identification of a class of bipartite nuclear targeting sequence. Cell 64:615–623.
   PubMed Web of Science ®Google Scholar
• Rose, M. D., P. Novick, J. H. Thomas, D. Botstein, and F. R. Fink. 1987. A Saccharomyces cerevisiae genomic plasmid bank based on a centromere containing shuttle vector. Gene 60:237–243.
   PubMed Web of Science ®Google Scholar
• Rothstein, R. 1983. One-step gene disruption in yeast. Methods Enzymol. 101:202–209.
   PubMed Web of Science ®Google Scholar
• Ruether, U., and B. Muller-Hill. 1983. Easy identification of cDNA clones. EMBO J. 2:1791–1794.
   PubMedGoogle Scholar
• Sandbaken, M. G., and M. R. Culbertson. 1988. Mutations in elongation factor EF1-α affect the frequency of frameshifting and amino acid misincorporation in Saccharomyces cerevisiae. Genetics 120:923–934.
   PubMed Web of Science ®Google Scholar
• Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463–5467.
   PubMed Web of Science ®Google Scholar
• Sauer, R. T., R. R. Yocum, R. R. Doolittle, M. Lewis, and C. O. Pabo. 1982. Homology among DNA-binding proteins suggests use of a conserved super-secondary structure. Nature (London) 298:447–451.
   PubMed Web of Science ®Google Scholar
• Seldon, R. F. 1988. Preparation and analysis of RNA, p. 4.9.1–4.9.5. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology, vol. 1. Greene Publishing Associates and Wiley-Interscience, New York.
   Google Scholar
• Sherman, F., G. R. Fink, and J. Hicks. 1982. Methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27.
   PubMed Web of Science ®Google Scholar
• Struhl, K. 1987. Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast. Cell 49:295–297.
   PubMed Web of Science ®Google Scholar
• Tanner, Ν. Κ., Μ. Μ. Hanna, and J. Abelson. 1988. Binding interactions between yeast tRNA ligase and a precursor transfer ribonucleic acid containing two photoreactive uridine analogs. Biochemistry 27:8852–8861.
   PubMed Web of Science ®Google Scholar
• Towbin, H., T. Staehelin, and J. Gordon. 1979. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. USA 76:4350–4354.
   PubMed Web of Science ®Google Scholar
• Ullmann, Α., F. Jacob, and J. Monod. 1967. Characterization by in vitro complementation of a peptide corresponding to an operator-proximal segment of the β-galactosidase structural gene of Escherichia coli. J. Mol. Biol. 24:339.
   PubMed Web of Science ®Google Scholar
• Ursic, D., and M. Culbertson. 1991. The yeast homolog to mouse Tcp-1 affects microtubule-mediated processes. Mol. Cell. Biol. 11:2629–2640.
   PubMedGoogle Scholar
• Ursic, D., and M. Culbertson. Unpublished data.
   Google Scholar
• Valee, B. L., J. E. Coleman, and D. S. Auld. 1991. Zinc fingers, zinc clusters, and zinc twists in DNA-binding protein domains. Proc. Natl. Acad. Sci. USA 88:999–1003.
   PubMedGoogle Scholar
• van Zyl, W. Η., Ν. Wills, and J. R. Broach. 1989. A general screen for mutants of Saccharomyces cerevisiae deficient in tRNA biosynthesis. Genetics 123:55–68.
   PubMedGoogle Scholar
• Vinson, C. R., P. B. Sigler, and S. L. McKnight. 1989. Scissorsgrip model for DNA recognition by a family of leucine zipper proteins. Science 246:911–915.
   PubMed Web of Science ®Google Scholar
• Wang, S., and A. K. Hopper. 1988. Isolation of a yeast gene involved in species-specific pre-tRNA processing. Mol. Cell. Biol. 8:5140–5149.
   PubMed Web of Science ®Google Scholar
• Westaway, S. Κ., Ε. Μ. Phizicky, and J. Abelson. 1988. Structure and function of the yeast tRNA ligase gene. J. Biol. Chem. 263:3171–3176.
   PubMedGoogle Scholar
• Winey, M., and M. R. Culbertson. 1988. Mutations affecting the tRNA-splicing endonuclease activity of Saccharomyces cerevisiae. Genetics 118:607–617.
   Google Scholar
• Woolford, J. 1989. Nuclear pre-mRNA splicing in yeast. Yeast 5:439–457.
   PubMed Web of Science ®Google Scholar
• Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors. Gene 33:103–119.
   PubMed Web of Science ®Google Scholar
• Zaret, K., and F. Sherman. 1982. DNA sequence required for efficient transcription termination in yeast. Cell 28:563–573.
   PubMed Web of Science ®Google Scholar