36
Views
44
CrossRef citations to date
0
Altmetric
Gene Expression

Gene Products That Promote mRNA Turnover in Saccharomyces cerevisiae

, , &
Pages 2165-2177 | Received 11 Nov 1991, Accepted 17 Feb 1992, Published online: 31 Mar 2023

REFERENCES

  • Andre, Β. 1990. The UGA3 gene regulating the GABA catabolic pathway in Saccharomyces cerevisiae codes for a putative zinc-finger protein acting on RNA amount. Mol. Gen. Genet. 220:269–276.
  • Bennetzen, J. L., and B. D. Hall. 1982. Codon selection in yeast. J. Biol. Chem. 257:3026–3031.
  • Berg, J. 1986. Potential metal-binding domains in nucleic acid binding proteins. Science 232:485–487.
  • Birnboim, H. C., and J. Doly. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1513–1523.
  • Cigan, A. M., L. Feng, and T. F. Donahue. 1988. tRNA-meti functions in directing the scanning ribosome to the start site of translation. Science 242:93–97.
  • Cottrelle, P., D. Thiele, V. L. Price, S. Memet, J.-Y. Μicouin, C. Marck, J.-M. Buhler, A. Sentenac, and P. Fromageot. 1985. Cloning, nucleotide sequence, and expression of one of two genes coding for yeast elongation factor 1α. J. Biol. Chem. 260:3090–3096.
  • Culbertson, M. R., Κ. Μ. Underbrink, and G. R. Fink. 1980. Frameshift suppression in Saccharomyces cerevisiae. II. Genetics properties of Group II suppressors. Genetics 95:833–853.
  • DeMarini, D. J., M. Winey, D. Ursic, F. Webb, and M. R. Culbertson. 1992. SEN1, a positive effector of tRNA-splicing endonuclease in Saccharomyces cerevisiae. Mol. Cell. Biol. 12:2154–2164.
  • Dever, T. E., M. J. Glynias, and W. C. Merrick. 1987. GTP binding domain: three consensus sequence elements with distinct spacing. Proc. Natl. Acad. Sci. USA 84:1814–1818.
  • Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387–395.
  • Dobson, M. J., M. F. Tuite, N. A. Roberts, A. J. Kingsman, S. M. Kingsman, R. E. Perkins, S. C. Conroy, B. Dunbar, and L. A. Fothergill. 1982. Conservation of high efficiency promoter sequences in Saccharomyces cerevisiae. Nucleic Acids Res. 10:2625–2637.
  • Donahue, T. F., A. M. Cigan, E. K. Pabich, and B. C. Valavicius. 1988. Mutations at a Zn(II) finger motif in the yeast eΙΡ-2β gene alter ribosomal start-site selection during the scanning process. Cell 54:621–632.
  • Donahue, T. F., P. J. Farabaugh, and G. R. Fink. 1981. Suppressible glycine and proline four base codons. Science 212:455–457.
  • Eakle, Κ. Α., Μ. Bernstein, and S. D. Emr. 1988. Characterization of a component of the yeast secretion machinery: identification of the SEC18 gene product. Mol. Cell. Biol. 8:4098–4109.
  • Falco, S. C., and D. Botstein. 1985. A rapid chromosome-mapping method for cloned fragments of yeast DNA. Genetics 105:857–872.
  • Falco, S. C., Y. Li, J. R. Broach, and D. Botstein. 1983. Genetic consequences of chromosomally integrated 2μ plasmid DNA in yeast. Cell 29:573–584.
  • Friden, P., and P. Schimmel. 1987. LEU3 of Saccharomyces cerevisiae encodes a factor for control of RNA levels of a group of leucine-specific genes. Mol. Cell. Biol. 7:2708–2717.
  • Gaber, R. F., and M. R. Culbertson. 1982. Frameshift suppression in Saccharomyces cerevisiae. IV. New suppressors among spontaneous co-revertants of the Group-II his4-206 and leu2-3 frameshift mutations. Genetics 101:345–367.
  • Greene, J. M., and K. Struhl. 1987. S1 analysis of mRNA using single-stranded DNA probes, p. 4.6.1–4.6.13. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology, vol. 1. Greene Publishing Associates and Wiley-Inter-science, New York.
  • Hendrick, J., and M. Culbertson. Unpublished data.
  • Herrick, D., R. Parker, and A. Jacobson. 1990. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 10:2269–2284.
  • Herskowitz, I. 1987. Functional inactivation of genes by dominant negative mutations. Nature (London) 329:219–222.
  • Holmes, D. S., and M. Quigley. 1981. A rapid boiling method for the preparation of bacterial plasmids. Anal. Biochem. 114:193–197.
  • Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163–168.
  • Johnston, M. 1987. Genetic evidence that zinc is an essential co-factor in the DNA binding domain of GAL4 protein. Nature (London) 328:353–355.
  • Kammerer, B., A. Guyuonvarch, and J. C. Hubert. 1984. Yeast regulatory gene PPR1. I. Nucleotide sequence, restriction map and codon usage. J. Mol. Biol. 180:239–250.
  • Kim, J., and C. A. Michaels. 1988. The MAL63 gene of Saccharomyces cerevisiae encodes a cysteine-zinc finger protein. Curr. Genet. 14:319–323.
  • Kingston, R. E. 1987. Primer extension, p. 4.8.1–4.8.3. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology, vol. 1. Greene Publishing Associates and Wiley-Interscience, New York.
  • Koller, K. J., and M. J. Brownstein. 1987. Use of a cDNA clone to identify a supposed precursor protein containing valosin. Nature (London) 325:542–545.
  • Lee, B.-S., and M. R. Culbertson. Unpublished data.
  • Leeds, P., S. W. Peltz, A. Jacobson, and M. R. Cultertson. 1991. The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev. 5:2303–2314.
  • Lindquist, S. 1981. Regulation of protein synthesis during heat shock. Nature (London) 293:311–314.
  • Lisziewicz, J., A. Godany, D. V. Agoston, and H. Kuntzel. 1988. Cloning and characterization of the Saccharomyces cerevisiae CDC6 gene. Nucleic Acids Res. 16:11507–11530.
  • Losson, G., R. Losson, and F. Lacroute. 1980. Constitutive mutants for orotodine-5-phosphate decarboxylase and dihydro-orotic acid dehydrogenase in Saccharomyces cerevisiae. Curr. Genet. 2:39–44.
  • Losson, R., R. P. Fuchs, and F. Lacroute. 1983. In vivo transcription of a eukaryotic regulatory gene. EMBO J. 2:2179–2184.
  • Losson, R., and F. Lacroute. 1979. Interference of nonsense mutations with eukaryotic messenger RNA stability. Proc. Natl. Acad. Sci. USA 76:5134–5137.
  • Masurekar, M., E. Palmer, B. I. Ono, J. M. Wilhelm, and F. Sherman. 1981. Misreading of the ribosomal suppressor SUF46 due to an altered 40S subunit in yeast. J. Mol. Biol. 147:381–390.
  • Mendenhall, M. D., P. Leeds, H. Fen, L. Mathison, M. Zwick, C. Sleiziz, and M. R. Culbertson. 1987. Frameshift suppressor mutations affecting the major glycine transfer RNAs of Saccharomyces cerevisiae. J. Mol. Biol. 194:41–58.
  • Messenguy, F., E. Dubois, and F. Descamps. 1986. Nucleotide sequence of the ARGII regulatory gene and amino acid sequence homologies between ARGII, PPR1, and GAL4 regulatory proteins. Eur. J. Biochem. 157:77–81.
  • Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Montgomery, D. L., D. W. Leung, M. Smith, P. Shalit, G. Faye, and B. D. Hall. 1980. Isolation and sequence of the gene for iso-2-cytochrome-c in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 77:541–545.
  • Mortimer, R. K., and D. C. Hawthorne. 1966. Genetic mapping in Saccharomyces. Genetics 53:165–173.
  • Mosselehner, K., U. Muller, U. Karls, L. Hamann, and K. Harbers. 1991. Structure and expression of a gene encoding a putative GTP-binding protein identified by provirus integration in a transgenic mouse strain. Mol. Cell. Biol. 11:886–893.
  • Nelbock, P., P. J. Dillon, A. Perkins, and C. A. Rosen. 1990. A cDNA for a protein that interacts with the human immunodeficiency virus Tat transactivator. Science 248:1650–1653.
  • Ono, B. I., Y. Ishino-Arao, M. Tanaka, I. Awanao, and S. Shinoda. 1984. Recessive nonsense suppressors in Saccharomyces cerevisiae: action spectra, complementation groups and map positions. Genetics 114:363–374.
  • Ono, B. I., M. Tanaka, M. Kominami, Y. Ishino, and S. Shnoda. 1982. Recessive UAA suppressor of the yeast Saccharomyces cerevisiae. Genetics 102:653–664.
  • Orr-Weaver, T. L., J. W. Szostak, and R. J. Rothstein. 1981. Yeast transformation: a model system for the study of recombination. Proc. Natl. Acad. Sci. USA 78:6354–6358.
  • Pan, T., and J. E. Coleman. 1990. GAL4 transcription factor is not a "zinc finger" but forms a Zn(II)2Cys6 binuclear cluster. Proc. Natl. Acad. Sci. USA 87:2077–2081.
  • Parker, R., D. Herrick, S. W. Peltz, and A. Jacobson. 1991. Measurement of mRNA decay rates in Saccharomyces cerevisiae. Methods Enzymol. 194:415–423.
  • Pelsy, F., and F. Lacroute. 1984. Effect of ochre nonsense mutations on yeast URA1 mRNA stability. Curr. Genet. 8:277–282.
  • Peltz, S., P. Leeds, J. Wood, A. Atkin, M. R. Culbertson, and A. Jacobson. Unpublished data.
  • Pfeifer, K., K.-S. Kim, S. Kogan, and L. Guarente. 1989. Functional dissection and sequence of yeast HAP1 activator. Cell 56:291–301.
  • Powers, S., T. Kataoka, O. Fasano, M. Goldfarb, J. Strathern, J. Broach, and M. Wigler. 1984. Genes in S. cerevisiae encoding proteins with domains homologous to the mammalian RAS proteins. Cell 36:607–612.
  • Rose, M. D., and G. R. Fink. 1987. Karl, a gene required for function of both intranuclear and extranuclear microtubules in yeast. Cell 48:1047–1060.
  • Rose, M. D., P. Novick, J. H. Thomas, D. Botstein, and G. R. Fink. 1987. A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector. Gene 60:237–243.
  • Sandbaken, M. G., and M. R. Culbertson. 1988. Mutations in elongation factor EF1-α affect the frequency of frameshifting and amino acid misincorporation in Saccharomyces cerevisiae. Genetics 120:923–934.
  • Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463–5467.
  • Shaw, K. J., and M. V. Olson. 1984. Effects of altered 5′-flanking sequences on the in vivo expression of a Saccharomyces cerevisiae tRNATyr gene. Mol. Cell. Biol. 4:657–665.
  • Sherman, F., G. R. Fink, and C. W. Lawrence. 1979. Methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  • Singh, Α., D. Ursic, and J. Davies. 1979. Phenotypic suppression and misreading in Saccharomyces cerevisiae. Nature (London) 277:146–148.
  • Snyder, E. J., J. A. Den Boon, P. J. Bredenbeek, M. C. Horzinek, R. Rijnbrand, and W. J. M. Spaan. 1990. The carboxyl-terminal part of the putative Berne virus polymerase is expressed by ribosomal frameshifting and contains sequence motifs which indicate that toro- and coronaviruses are evolutionary related. Nucleic Acids Res. 18:4535–4542.
  • Struhl, K., D. T. Stinchcomb, S. Scherer, and R. W. Davis. 1979. High frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc. Natl. Acad. Sci. USA 76:1035–1039.
  • Surguchov, A. P., V. N. Smirnov, M. D. Ter-Avanesvan, and S. G. Inge-Vechtomov. 1984. Ribosomal suppression in eukaryotes. Physiochem. Biol. Rev. 4:147–205.
  • Suzuki, M. 1989. SPXX, a frequent sequence motif in gene regulatory proteins. J. Mol. Biol. 207:61–84.
  • Vallee, B. L., J. E. Coleman, and D. S. Auld. 1991. Zinc fingers, zinc clusters, and zinc twists in DNA-binding protein domains. Proc. Natl. Acad. Sci. USA 88:999–1003.
  • Winey, M., and M. R. Culbertson. 1988. Mutations affecting the tRNA-splicing endonuclease activity of Saccharomyces cerevisiae. Genetics 118:609–617.
  • Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors. Gene 33:103–119.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.