Binding of a Sequence-Specific Single-Stranded DNA-Binding Factor to the Simian Virus 40 Core Origin Inverted Repeat Domain is Cell Cycle Regulated

REFERENCES

• Aladjem, Μ., Y. Koltin, and S. Lavi. 1987. Carcinogen mediated amplification of the CUPI locus of Saccharomyces cerevisiae. Mol. Gen. Genet. 211:88–94.
   Google Scholar
• Baer, R., A. T. Bankier, Μ. D. Biggin, P. L. Deininger, P. J. Farrell, T. J. Gibson, G. Hatful, G. S. Hudson, S. D. Satchwell, C. Seguin, P. S. Tuffhell, and B. G. Barrell. 1984. DNA sequence and expression of the B95-8 Epstein-Barr virus genome. Nature (London) 310:207–211.
   PubMed Web of Science ®Google Scholar
• Bergemann, A. D., and E. Μ. Johnson. 1992. The HeLa Pur factor binds single-stranded DNA at a specific element conserved in gene flanking regions and origins of DNA replication. Mol. Cell. Biol. 12:1257–1265.
   PubMed Web of Science ®Google Scholar
• Berko-Flint, Y., S. Karby, D. Hassin, and S. Lavi. 1990. Carcinogen-induced DNA amplification in vitro: overreplication of the simian virus 40 origin region in extracts from carcinogen-treated CO60 cells. Mol. Cell. Biol. 10:75–83.
   PubMedGoogle Scholar
• Berko-Flint, Y., S. Karby, and S. Lavi. 1989. Carcinogen- induced factors responsible for SV40 DNA replication and amplification in Chinese hamster cells, p. 133–141. In T. J. Kelly and B. Stillman (ed.), Cancer cells 6. Eukaryotic DNA replication. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Boroweic, J. A., and J. Hurwitz. 1988. Localized melting and structural changes in the SV40 origin of replication induced by T antigen. EMBO J. 7:3149–3158.
   PubMedGoogle Scholar
• Bradford, Μ. Μ. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248–254.
   PubMed Web of Science ®Google Scholar
• Chang, L. Μ. S. 1977. DNA polymerases from bakers’ yeast. J. Biol. Chem. 252:1873–1880.
   PubMed Web of Science ®Google Scholar
• Carmichael, E. P., and A. F. Wahl. Unpublished observations.
   Google Scholar
• Chodosh, L. A., R. W. Carthew, and P. A. Sharp. 1986. A single polypeptide possesses the binding and transcription activities of the adenovirus major late transcription factor. Mol. Cell. Biol. 6:4723–4733.
   PubMed Web of Science ®Google Scholar
• Cross, F., J. Roberts, and H. Weintraub. 1989. Simple and complex cell cycles. Annu. Rev. Cell Biol. 5:341–395.
   PubMedGoogle Scholar
• Crute, J. J., A. F. Wahl, and R. A. Bambara. 1986. Purification and characterization of two new high molecular weight forms of DNA polymerase delta. Biochemistry 25:26–36.
   PubMed Web of Science ®Google Scholar
• Cunningham, T. P., and J. Μ. Pipas. 1985. Simian agent 12 is a BK virus-like papovavirus which replicates in monkey cells. J. Virol. 54:483–492.
   PubMedGoogle Scholar
• Dignam, J. D., R. Μ. Lebovitz, and R. Roeder. 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1475–1489.
   PubMed Web of Science ®Google Scholar
• Din, S., S. J. Brill, Μ. P. Fairman, and B. Stillman. 1990. Cell-cycle-regulated phosphorylation of DNA replication factor A from human and yeast cells. Genes Dev. 4:968–977.
   PubMed Web of Science ®Google Scholar
• Ehrfeld, A., F. Planas-Bohne, and C. Lücke-Huhle. 1986. Amplification of oncogenes and integrated SV40 sequences in mammalian cells by the decay of incorporated iodine-125. Radiat. Res. 108:43–51.
   PubMed Web of Science ®Google Scholar
• Fairman, Μ. P., and B. Stillman. 1988. Cellular factors required for multiple stages of SV40 DNA replication in vitro. EMBO J. 7:1211–1218.
   PubMedGoogle Scholar
• Fogel, M., and L. Sachs. 1970. Induction of virus synthesis in polyoma transformed cells by ultraviolet light and mitomycin C. Virology 38:174–177.
   Google Scholar
• Frisque, R. J., G. L. Bream, and Μ. T. Cannella. 1984. Human polyomavirus JC virus genome. J. Virol. 51:458–469.
   PubMed Web of Science ®Google Scholar
• Hamatake, R. K., H. Hasegawa, A. B. Clark, K. Bebenek, T. A. Kunkel, and A. Sugino. 1990. Purification and characterization of DNA polymerase II from the yeast Saccharomyces cerevisiae: identification of the catalytic core and a possible holoenzyme form of the enzyme. J. Biol. Chem. 265:4072–4083.
   PubMed Web of Science ®Google Scholar
• Kim, C., R. O. Snyder, and Μ. S. Wold. 1992. Binding properties of replication protein A from human and yeast cells. Mol. Cell. Biol. 12:3050–3059.
   PubMed Web of Science ®Google Scholar
• Kleinberger, T., S. Etkin, and S. Lavi. 1986. Carcinogen- mediated methotrexate resistance and dihydrofolate reductase amplification in Chinese hamster cells. Mol. Cell. Biol. 6:1958–1964.
   PubMedGoogle Scholar
• Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680–685.
   PubMed Web of Science ®Google Scholar
• Lambert, Μ. E., S. Gattoni-Celli, P. Kirschmeier, and I. B. Weinstein. 1983. Benzo(α)pyrene induction of extrachromosomal viral DNA synthesis in rat cells transformed by polyoma virus. Carcinogenesis (London) 4:587–593.
   PubMed Web of Science ®Google Scholar
• Lambert, Μ. E., S. Pellegrini, S. Gattoni-Celli, and I. B. Weinstein. 1986. Carcinogen-induced asynchronous replication of polyoma DNA is mediated by a trans-acting factor. Carcinogenesis (London) 7:1011–1017.
   PubMed Web of Science ®Google Scholar
• Lavi, S. 1981. Carcinogen-mediated ampification of viral DNA sequences in simian virus 40-transformed Chinese hamster embryo cells. Proc. Natl. Acad. Sci. USA 78:6144–6148.
   PubMed Web of Science ®Google Scholar
• Lavi, S., T. Kleinberger, Y. Berko-Flint, and Μ. Blank. 1987. Stable and transient coamplification of dhfr and SV40 in carcinogen treated cells, p. 117–125. In H. zur Hausen and J. R. Schlehofer (ed.), Accomplishments in oncology, vol. 2. J. B. Lippincott Co., Philadelphia.
   Google Scholar
• Liicke-Huhle, C., and P. Herrlich. 1987. Alpha-radiation-induced amplification of integrated SV40 sequences is mediated by a trans-acting mechanism. Int. J. Cancer 39:94–98.
   PubMedGoogle Scholar
• Lücke-Huhle, C., S. Mai, and P. Herrlich. 1989. UV-induced early-domain binding factor as the limiting component of simian virus 40 DNA amplification in rodent cells. Mol. Cell. Biol. 9:4812–4818.
   PubMed Web of Science ®Google Scholar
• Lücke-Huhle, C., Μ. Pech, and P. Herrlich. 1986. Selective gene amplification in mammalian cells after exposure to 60Co γ rays, 241Am α particles, or UV light. Radiat. Res. 106:345–355.
   PubMed Web of Science ®Google Scholar
• Marraccino, R. L., A. F. Wahl, P. C. Keng, E. Μ. Lord, and R. A. Bambara. 1987. Cell cycle dependent activities of DNA polymerase alpha and delta in Chinese hamster ovary cells. Biochemistry 26:7864–7870.
   PubMedGoogle Scholar
• Meistrich, Μ. L. 1983. Experimental factors involved in separation by centrifugal elutriation, p. 33–61. In T. G. PretlowII and T. P. Pretlow (ed.), Cell separation: methods and selected applications, vol. 2. Academic Press, New York.
   Google Scholar
• Morris, G. F., and Μ. B. Matthews. 1989. Regulation of proliferating cell nuclear antigen during the cell cycle. J. Biol. Chem. 264:13856–13864.
   PubMed Web of Science ®Google Scholar
• Nomura, S., and Μ. Oishi. 1984. UV irradiation induces an activity which stimulates simian virus 40 rescue upon cell fusion. Mol. Cell. Biol. 4:1159–1162.
   PubMed Web of Science ®Google Scholar
• Oh, S.-J., T. Chittenden, and A. J. Levine. 1991. Identification of cellular factors that bind specifically to the Epstein-Barr virus origin of DNA replication. J. Virol. 65:514–519.
   PubMedGoogle Scholar
• Parsons, R., Μ. E. Anderson, and P. Tegtmeyer. 1990. Three domains in the simian virus 40 core origin orchestrate the binding, melting, and DNA helicase activities of T antigen. J. Virol. 64:509–518.
   PubMedGoogle Scholar
• Riordan, J. R., K. Deuchars, N. Kartner, N. Alon, J. Trent, and V. Ling. 1985. Amplification of P glycoprotein genes in multidrug resistant mammalian cell lines. Nature (London) 316:817–819.
   PubMed Web of Science ®Google Scholar
• Roberts, J. Μ., and G. D’Urso. 1988. An origin unwinding activity regulates initiation of DNA replication during mammalian cell cycle. Science 241:1486–1489.
   PubMedGoogle Scholar
• Ronai, Z. A., Μ. E. Lambert, Μ. D. Johnson, E. Okin, and I. B. Weinstein. 1987. Induction of asynchronous replication of polyoma DNA by ultraviolet irradiation and the effect of various inhibitors. Cancer Res. 47:4565–4570.
   PubMedGoogle Scholar
• Ronai, Z. A., and I. B. Weinstein. 1988. Identification of a UV-induced trans-acting protein that stimulates polyomavirus DNA replication. J. Virol. 62:1057–1060.
   PubMedGoogle Scholar
• Ronai, Z. A., and I. B. Weinstein. 1990. Identification of ultraviolet-inducible proteins that bind to a TGACAACA se-quence in the polyoma virus regulatory region. Cancer Res. 50:5374–5381.
   PubMedGoogle Scholar
• Roninson, I. B., H. T. Abelson, D. E. Housman, N. Howell, and A. Varshavsky. 1984. Amplification of specific DNA sequences correlates with multi-drug resistance in Chinese hamster cells. Nature (London) 309:626–628.
   PubMed Web of Science ®Google Scholar
• Schimke, R. T. 1984. Gene amplification, drug resistance and cancer. Cancer Res. 44:1735–1742.
   PubMed Web of Science ®Google Scholar
• Schimke, R. T. 1984. Gene amplification in cultured animal cells. Cell 37:705–713.
   PubMed Web of Science ®Google Scholar
• Schlehofer, J. R., Μ. Ehrbar, and H. Zur Hausen. 1986. Vaccinia virus, herpes simplex virus and carcinogens induce DNA amplification in a human cell line and support replication of a helper virus dependent parvovirus. Virology 152:110–117.
   PubMed Web of Science ®Google Scholar
• Sehorpp, Μ., W. Kugler, U. Wagner, and G. U. Ryffel. 1988. Hepatocyte-Specific promoter element HPl of the Xenopus albumin gene interacts with transcriptional factors of mammalian hepatocytes. J. Mol. Biol. 202:2787–2791.
   Google Scholar
• Stark, G. R., and G. Μ. Wahl. 1984. Gene amplification. Annu. Rev. Biochem. 53:447–491.
   PubMed Web of Science ®Google Scholar
• Stow, N. D., and E. C. McMonagle. 1983. Characterization of the TRS/IRS origin of DNA replication of herpex simplex virus type 1. Virology 130:427–438.
   PubMedGoogle Scholar
• Syväoja, J., S. Suomensaari, C. Nishida, J. S. Goldsmith, G. S. Chui, S. Jain, and S. Linn. 1990. DNA polymerases alpha, delta, and epsilon: three distinct enzymes from HeLa cells. Proc. Natl. Acad. Sci. 87:6664–6668.
   PubMed Web of Science ®Google Scholar
• Thilly, W. G., T. S. Nowak, Jr., and G. N. Wogan. 1974. Maintaining perpetual synchrony in HeLa S3 culture. Biotech- nol. Bioeng. 16:149–156.
   Google Scholar
• Tlsty, T. D., P. C. Brown, and R. T. Schimke. 1984. UV irradiation facilitates methotrexate resistance and amplification of the dihydrofolate reductase gene in cultured 3T6 mouse cells. Mol. Cell. Biol. 4:1050–1056.
   PubMed Web of Science ®Google Scholar
• Tlsty, T. D., A. White, and J. Sanchez. 1992. Suppression of gene amplification in human cell hybrids. Science 225:1425–1427.
   Google Scholar
• Traut, W., and E. Fanning. 1988. Sequence-specific interactions between a cellular DNA-binding protein and the simian virus 40 origin of DNA replication. Mol. Cell. Biol. 8:903–911.
   PubMedGoogle Scholar
• Treger, J. Μ., J. Hauser, and K. Dixon. 1988. Molecular analysis of enhanced replication of UV-damaged simian virus 40 DNA in UV-treated mammalian cells. Mol. Cell. Biol. 8:2428–2434.
   PubMedGoogle Scholar
• Van der Lubbe, J. L. Μ., P. J. Abrahams, C. Μ. van Drunen, and A. J. van der Eb. 1986. Enhanced induction of SV40 replication from transformed rat cells by fusion with UV- irradiated normal and repair-deficient human fibroblasts. Mutat. Res. 165:47–56.
   PubMedGoogle Scholar
• Wahl, A. F., A. Μ. Geis, B. H. Spain, S. W. Wong, D. Korn, and T. S.-F. Wang. 1988. Gene expression of human DNA polymerase alpha during cell proliferation and the cell cycle. Mol. Cell. Biol. 8:5016–5025.
   PubMedGoogle Scholar
• Weinstein, I. B. 1988. The origins of human cancer: molecular mechanisms of carcinogenesis and their implications for cancer prevention and treatment: twenty-seventh G.H.A. Clowes Memorial Award Lecture. Cancer Res. 48:4135–4143.
   PubMed Web of Science ®Google Scholar
• Wobbe, C. R., L. Weissbach, J. A. Borowiec, R. B. Dean, Y. Murakami, P. Bullock, and J. Hurwitz. 1987. Replication of simian virus 40 origin-containing DNA in vitro with purified proteins. Proc. Natl. Acad. Sci. USA 84:1834–1838.
   PubMedGoogle Scholar
• Wold, Μ. D., and T. Kelly. 1988. Purification and characterization of replication protein A, a cellular protein required for in vitro replication of simian virus 40 DNA. Proc. Natl. Acad. Sci. USA 85:2523–2527.
   PubMed Web of Science ®Google Scholar
• Wold, Μ. S., J. J. Li, D. H. Weinberg, D. Μ. Virshup, J. L. Sherley, E. Verheyen, and T. J. Kelly. 1988. Cellular proteins required for SV40 DNA replication in vitro, p. 133–141. In T. J. Kelly and B. Stillman (ed.), Cancer cells 6. Eukaryotic DNA replication. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Yakobson, B., T. A. Hrynko, Μ. J. Peak, and E. Winocour. 1989. Replication of adeno-associated virus in cells irradiated with UV light at 254 nm. J. Virol. 63:1023–1030.
   PubMed Web of Science ®Google Scholar