16
Views
12
CrossRef citations to date
0
Altmetric
Gene Expression

PUB1 is a Major Nuclear and Cytoplasmic Polyadenylated RNA-Binding Protein in Saccharomyces cerevisiae

, &
Pages 6102-6113 | Received 20 Apr 1993, Accepted 28 Jun 1993, Published online: 31 Mar 2023

References

  • Adam, S. A., T. Nakagawa, M. S. Swanson, T. K. Woodruff, and G. Dreyfuss. 1986. mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleopro-tein consensus sequence. Mol. Cell. Biol. 6:2932–2943.
  • Agard, D. A., Y. Hiraoka, P. Shaw, and J. W. Sedat. 1989. Fluorescence microscopy in three dimensions. Methods Cell Biol. 30:353–377.
  • Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic alignment search tool. J. Mol. Biol. 215:403–410.
  • Anderson, J. T., S. M. Wilson, K. V. Datar, and M. S. Swanson. 1993. NAB2: a yeast nuclear polyadenylated RNA-binding protein essential for cell viability. Mol. Cell. Biol. 13:2730–2741.
  • Anderson, J. T., S. M. Wilson, and M. S. Swanson. Unpublished data.
  • Aris, J. P., and G. Blobel. 1988. Identification and characteriza-tion of a yeast nucleolar protein that is similar to a rat liver nucleolar protein. J. Cell Biol. 107:17–31.
  • Atwater, J. A., R Wisdom, and I. M. Verma. 1990. Regulated mRNA stability. Annu. Rev. Genet. 24:519–541.
  • Bandziulis, R. J., M. S. Swanson, and G. Dreyfuss. 1989. RNA-binding proteins as developmental regulators. Genes Dev. 3:431–437.
  • Bennett, M., S. Piñol-Roma, D. Staknis, G. Dreyfuss, and R. Reed. 1992. Differential binding of heterogeneous nuclear ribo-nucleoproteins to mRNA precursors prior to splicesome assem-bly in vitro. Mol. Cell. Biol. 12:3165–3175.
  • Burd, C. G., E. L. Matunis, and G. Dreyfuss. 1991. The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities. Mol. Cell. Biol. 11:3419–3424.
  • Chen, H., J. W. Sedat, and D. A. Agard. 1989. Manipulation, display, and analysis of three-dimensional biological images. p. 127–135. In J. B. Pawley (ed.), The handbook of biological confocal microscopy. IMR Press, Madison, Wis.
  • Choi, Y. D., P. J. Grabowski, P. A. Sharp, and G. Dreyfuss. 1986. Heterogeneous nuclear ribonucleoproteins: role in RNA splicing. Science 231:1534–1539.
  • Chesnut, K. A., and M. S. Swanson. Unpublished data.
  • Cleveland, D. W., and T. J. Yen. 1992. Multiple determinants of eukaryotic mRNA stability. New Biol. 1:121–126.
  • Datar, K. V., G. Dreyfuss, and M. S. Swanson. 1993. The human hnRNP M proteins: identification of a methionine/arginine-rich repeat motif in ribonucleoproteins. Nucleic Acids Res. 21:439–446.
  • Dearsly, A. L., R. M. Johnson, P. Barrett, and J. Sommerville. 1985. Identification of a 60-kDa phosphoprotein that binds stored messenger RNA of Xenopus oocytes. Eur. J. Biochem. 150:95–103.
  • Dreyfuss, G. 1986. Structure and function of nuclear and cyto-plasmic ribonucleoprotein particles. Annu. Rev. Cell Biol. 2:459–498.
  • Dreyfuss, G., Y. D. Choi, and S. A. Adam. 1984. Characteriza-tion of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies. Mol. Cell. Biol. 4:1104–1114.
  • Dreyfuss, G., M. S. Swanson, and S. Pinol-Roma. 1988. Heter-ogeneous nuclear ribonucleoprotein particles and the pathway of mRNA formation. Trends Biochem. Sci. 13:86–91.
  • Elliott, D. J., D. S. Bowman, N. Abovich, F. S. Fay, and M. Rosbash. 1992. A yeast splicing factor is localized in discrete subnuclear domains. EMBO J. 10:3731–3736.
  • Ghetti, A., S. Pinol-Roma, W. M. Michael, C. Morandi, and G. Dreyfuss. 1992. hnRNP I, the polypyrimidine tract-binding pro-tein: distinct nuclear localization and association with hnRNAs. Nucleic Acids Res. 20:3671–3678.
  • Gil, A., P. A. Sharp, S. F. Jamison, and M. A. Garcia-Blanco. 1991. Characterization of cDNAs encoding the polypyrimidine tract-binding protein. Genes Dev. 5:1224–1236.
  • Grange, T., C. Martins de Sa, J. Oddos, and R. Pictet. 1987. Human mRNA polyadenylate binding protein: evolutionary conservation of a nucleic acid binding motif. Nucleic Acids Res. 15:4771–4787.
  • Groner, B., and S. L. Phillips. 1975. Polyadenylate metabolism in the nuclei and cytoplasm of Saccharomyces cerevisiae. J. Biol. Chem. 250:5640–5646.
  • Guthrie, C., and G. R. Fink (ed.). 1991. Guide to yeast genetics and molecular biology. Academic Press, Inc., San Diego, Calif.
  • Hiraoka, Y., J. W. Sedat, and D. A. Agard. 1990. Determination of the three-dimensional imaging properties of an optical micro-scope system: partial confocal behavior in epi-fluorescence microscopy. Biophys. J. 57:325–333.
  • Hiraoka, Y., J. R. Swedlow, M. R. Paddy, D. A. Agard, and J. W. Sedat. 1991. Three-dimensional, multiple wavelength fluorescence microscopy for the structural analysis of biological phenomena. Semin. Cell Biol. 2:153–165.
  • Hutchison, H. T., L. H. Hartwell, and C. S. McLaughlin. 1969. Temperature-sensitive yeast mutant defective in ribonucleic acid production. J. Bacteriol. 99:807–814.
  • Klausner, R. D., T. A. Rouault, and J. B. Harford. 1993. Regulating the fate of mRNA: the control of cellular iron metabolism. Cell 72:19–28.
  • Maquat, L. E. 1991. Nuclear mRNA export. Curr. Opin. Cell Biol. 3:1004–1012.
  • Mayeda, A., and A. R. Krainer. 1992. Regulation of alternative pre-mRNA splicing by hnRNP Al and splicing factor SF2. Cell 68:365–375.
  • Minvielle-Sebastia, L., B. Winsor, N. Bonneaud, and F. Lacroute. 1991. Mutations in the yeast RNA14 and RNA15 genes result in an abnormal mRNA decay rate; sequence analysis reveals an RNA-binding domain in the RNA15 protein. Mol. Cell. Biol. 11:3075–3087.
  • Paddy, M. R., J. T. Anderson, and M. S. Swanson. Unpublished data.
  • Paddy, M. R., A. S. Belmont, H. Saumweber, D. A. Agard, and J. W. Sedat. 1990. Interphase nuclear envelope lamins form a discontinuous network that interacts with only a fraction of the chromatin in the nuclear periphery. Cell 62:89–106.
  • Paddy, M. R., and D. Chelsky. 1991. Spoke: a 120-kD protein associated with a novel filamentous structure on or near kine-tochore microtubules in the mitotic spindle. J. Cell Biol. 113:161–17.
  • Patton, J. G., S. A. Mayer, P. Tempst, and B. Nadal-Ginard. 1991. Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing. Genes Dev. 5:1237–1251.
  • Pinol-Roma, S., and G. Dreyfuss. 1992. Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm. Nature (Lon-don) 355:730–732.
  • Riedel, N., and H. Fasold. 1992. Role of mRNA transport in posttranscriptional control of gene expression. p. 231–290. In C. M. Feldherr (ed.), Nuclear trafficking. Academic Press, Inc., San Diego, Calif.
  • Ripmaster, T. L., and J. L. Woolford. 1993. A protein containing conserved RNA-recognition motifs is associated with ribosomal subunits in Saccharomyces cerevisiae. Nucleic Acids Res. 21:3211–3216.
  • Rose, M. D., F. Winston, and P. Hieter. 1990. Methods in yeast genetics. A laboratory course manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
  • Ruby, S. W., and J. Abelson. 1991. Pre-mRNA splicing in yeast. Trends Genet. 7:79–85.
  • Sachs, A. B., M. W. Bond, and R. D. Kornberg. 1986. A single gene from yeast for both the nuclear and cytoplasmic polyade-nylate-binding proteins: domain structure and expression. Cell 45:827–835.
  • Sachs, A. B., and R. W. Davis. 1989. The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation. Cell 58:857–867.
  • Sachs, A. B., and J. A. Deardorff. 1992. Translation initiation requires the PAB-dependent poly(A) ribonuclease in yeast. Cell 70:961–973.
  • Sharp, P. M., E. Cowe, D. G. Higgins, D. C. Shields, K. H. Wolfe, and F. Wright. 1988. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizo-saccharomyces pombe, Drosophila melanogaster, and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Res. 16:8207–8211.
  • Sierakowska, H., W. Szer, P. J. Furdon, and R. Kole. 1986. Antibodies to hnRNP core proteins inhibit in vitro splicing of human p-globin pre-mRNA. Nucleic Acids Res. 14:5241–5254.
  • Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27.
  • Snyder, M., S. Elledge, D. Sweeter, R. A. Young, and R W. Davis. 1987. Xgtll: gene isolation with antibody probes and applications. Methods Enzymol. 154:107–128.
  • Swanson, M. S., and G. Dreyfuss. 1988. Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol. Cell. Biol. 8:2237–2241.
  • Swedlow, J. R., J. W. Sedat, and D. A. Agard. 1993. Multiple chromosomal populations of topoisomerase II detected in vivo by time-lapse, three-dimensional wide-field microscopy. Cell 73:97–108.
  • Wagenmakers, A. J. M., R. J. Reinders, and W. J. Van Venrooy. 1980. Cross-linking of mRNA to proteins by irradiation of intact cells with ultraviolet light. Eur. J. Biochem. 112:323–330.
  • Wahle, E., and W. Keller. 1992. The biochemistry of 3'-end cleavage and polyadenylation of messenger RNA precursors. Annu. Rev. Biochem. 61:419–440.
  • Wilson, S. M., M. R. Paddy, and M. S. Swanson. Unpublished data.
  • Zelus, B. D., D. H. Giebelhaus, D. W. Eib, K. A. Kenner, and R. T. Moon. 1989. Expression of the poly(A)-binding protein during development oiXenopus laevis. Mol. Cell. Biol. 9:2756–2760.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.