3' Splice Site Selection in Dicot Plant Nuclei Is Position Dependent

REFERENCES

• Aebi, M., H. Hornig, R. A. Padgett, J. Reiser, and C. Weismann. 1986. Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNA. Cell 47:555–565.
   PubMed Web of Science ®Google Scholar
• Barta, A., K. Sommergruber, D. Thompson, K. Hartmuth, M. A. Matzke, and A. J. M. Matzke. 1986. The expression of a nopaline synthase-human growth hormone chimeric gene in transformed tobacco and sunflower callus tissue. Plant Mol. Biol. 6:347–357.
   PubMed Web of Science ®Google Scholar
• Bennett, M., S. Pinol-Roma, D. Staknis, G. Dreyfuss, and R. Reed. 1992. Differential binding of heterogeneous nuclear ribo-nucleoproteins to mRNA precursors prior to spliceosome assembly in vitro. Mol. Cell. Biol. 12:3165–3175.
   PubMedGoogle Scholar
• Brown, J. W. S. 1986. A catalogue of splice junction and putative branch point sequences from plant introns. Nucleic Acids Res. 14:9549–9559.
   PubMed Web of Science ®Google Scholar
• Brown, J. W. S., G. Feix, and D. Frendeway. 1986. Accurate in vitro splicing of two pre-mRNA plant introns in a HeLa cell nuclear extract. EMBO J. 5:2749–2758.
   PubMedGoogle Scholar
• Clouet d'Orval, B., Y. D'Aubenton-Carafa, P. Sirand-Pugnet, M. Gallego, E. Brody, and J. Marie. 1991. RNA secondary structure repression of a muscle-specific exon in HeLa cell nuclear extracts. Science 252:1823–1828.
   PubMedGoogle Scholar
• Cooper, T. A., and C. P. Ordahl. 1989. Nucleotide substitutions within the cardiac troponin T alternative exon disrupt pre-mRNA alternative splicing. Nucleic Acids Res. 17:7905–7921.
   PubMedGoogle Scholar
• Csank, C., F. M. Taylor, and D. W. Martindale. 1990. Nuclear pre-mRNA introns: analysis and comparison of intron sequences from Tetrahymena thermophila and other eukaryotes. Nucleic Acids Res. 18:5133–5141.
   PubMed Web of Science ®Google Scholar
• Dennis, E. S., W. L. Gerlach, A. J. Pryor, J. L. Bennetzen, A. Inglis, D. Llewellyn, M. M. Sachs, R. J. Ferl, and W. J. Peacock. 1984. Molecular analysis of the alcohol dehydrogenase (Adhl) gene of maize. Nucleic Acids Res. 12:3983–4000.
   PubMedGoogle Scholar
• Dreyfuss, G. 1986. Structure and function of nuclear and cytoplasmic ribonucleoprotein particles. Annu. Rev. Cell Biol. 2:459–498.
   PubMedGoogle Scholar
• Dreyfuss, G., M. S. Swanson, and S. Pinol-Roma. 1990. The composition, structure and organization of proteins in heterogeneous nuclear ribonucleoprotein complexes. p. 503–517. In P. Strauss and S. Wilson (ed.), The eukaryotic nucleus: structure and function, vol. 2. Telford Press, West Caldwell, N.J..
   Google Scholar
• Frendeway, D., and W. Keller. 1985. Stepwise assembly of a pre-mRNA splicing complex requires U-snRNAs and specific intron sequences. Cell 42:355–367.
   PubMed Web of Science ®Google Scholar
• Freyer, G. A., J. P. O'Brien, and J. Hurwitz. 1989. Alterations in the polypyrimidine sequence affect the in vitro splicing reactions catalyzed by Hela cell-free preparations. J. Biol. Chem. 264:14631–14637.
   PubMedGoogle Scholar
• Fu, X.-Y., H. Ge, and J. L. Manley. 1988. The role of the polypyrimidine stretch at the SV40 early pre-mRNA 3' splice site in alternative splicing. EMBO J. 7:809–817.
   PubMedGoogle Scholar
• Garcia-Blanco, M. A., S. F. Jamison, and P. A. Sharp. 1989. Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3:1874–1886.
   PubMed Web of Science ®Google Scholar
• Ge, H., and J. L. Manley. 1990. A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro. Cell 62:25–34.
   PubMed Web of Science ®Google Scholar
• Gerke, V., and J. A. Steitz. 1986. A protein associated with small nuclear ribonucleoprotein particles recognizes the 3' splice site of premessenger RNA. Cell 47:973–984.
   PubMed Web of Science ®Google Scholar
• Goodall, G. J., and W. Filipowicz. 1989. The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. Cell 58:473–483.
   PubMedGoogle Scholar
• Goodall, G. J., and W. Filipowicz. 1991. Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants. EMBO J. 10:2635–2644.
   PubMed Web of Science ®Google Scholar
• Goodall, G. J., T. Kiss, and W. Filipowicz. 1991. Nuclear RNA splicing and small nuclear RNAs and their genes in higher plants. Oxf. Surv. Plant Mol. Cell Biol. 7:255–296.
   Google Scholar
• Goux-Pelletan, M., D. Libri, Y. D'Aubenton-Carafa, M. Fisz-man, E. Brody, and J. Marie. 1990. In vitro splicing of mutually exclusive exons from the chicken β-tropomyosin gene: role of the branch point location and very long pyrimidine stretch. EMBO J. 9:241–249.
   PubMedGoogle Scholar
• Green, M. R. 1991. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing. Annu. Rev. Cell Biol. 7:559–599.
   PubMedGoogle Scholar
• Hampson, R. K., L. La Follette, and F. M. Rottman. 1989. Alternative processing of bovine growth hormone mRNA is influenced by downstream exon sequences. Mol. Cell. Biol. 9:1604–1610.
   PubMedGoogle Scholar
• Hanley, B. A., and M. A. Schuler. 1988. Plant intron sequences: evidence for distinct groups of introns. Nucleic Acids Res. 16:7159–7176.
   PubMedGoogle Scholar
• Hanley-Bowdoin, L., J. S. Elmer, and S. G. Rogers. 1988. Transient expression of heterologous RNAs using tomato golden mosaic virus. Nucleic Acids Res. 16:10511–10529.
   PubMed Web of Science ®Google Scholar
• Hartmuth, K., and A. Barta. 1986. In vitro processing of a plant pre-mRNA in a HeLa cell nuclear extract. Nucleic Acids Res. 14:7513–7527.
   PubMedGoogle Scholar
• Helfman, D. M., R. F. Roscigno, G. J. Mulligan, L. A. Finn, and K. S. Weber. 1990. Identification of two distinct intron elements involved in alternative splicing of β-tropomyosin pre-mRNA. Genes Dev. 4:98–110.
   PubMedGoogle Scholar
• Keith, B., and N.-H. Chua. 1986. Monocot and dicot pre-mRNAs are processed with different efficiencies in transgenic tobacco. EMBO J. 5:2419–2425.
   PubMedGoogle Scholar
• Krainer, A. R., G. C. Conway, and D. Kozak. 1990. The essential pre-mRNA splicing factor SF2 influences 5' splice site selection by activating proximal sites. Cell 62:35–42.
   PubMed Web of Science ®Google Scholar
• Libri, D., A. Piseri, and M. Y. Fiszman. 1991. Tissue-specific splicing in vivo of the β-tropomyosin gene: dependence on an RNA secondary structure. Science 252:1842–1845.
   PubMed Web of Science ®Google Scholar
• Lou, H.. 1992. In vivo analysis of pre-mRNA splicing in dicot plant nuclei. Ph.D. dissertation. University of Illinois, Urbana-Champaign.
   Google Scholar
• Lou, H., A. J. McCullough, and M. A. Schuler. 1993. Expression of maize Adhl intron mutants in tobacco nuclei. Plant J. 3:393–403.
   PubMedGoogle Scholar
• Mardon, H. J., G. Sebastio, and F. E. Baralle. 1987. A role for exon sequences in alternative splicing of the human fibronectin gene. Nucleic Acids Res. 15:7725–7733.
   PubMedGoogle Scholar
• Mayeda, A., and A. R. Krainer. 1992. Regulation of alternative pre-mRNA splicing by hnRNP Al and splicing factor SF2. Cell 68:365–375.
   PubMed Web of Science ®Google Scholar
• Mayrand, S. H., and T. Pederson. 1990. Crosslinking of hnRNP proteins to pre-mRNA requires Ul and U2 snRNPs. Nucleic Acids Res. 18:3307–3318.
   PubMed Web of Science ®Google Scholar
• McCullough, A. J., H. Lou, and M. A. Schuler. 1991. In vivo analysis of plant pre-mRNA splicing using an autonomously replicating vector. Nucleic Acids Res. 19:3001–3009.
   PubMed Web of Science ®Google Scholar
• McCullough, A. J., H. Lou, and M. A. Schuler. 1993. Factors affecting authentic 5' splice site selection in plant nuclei. Mol. Cell. Biol. 13:1323–1331.
   PubMedGoogle Scholar
• Mullen, M. P., C. W. J. Smith, J. G. Patton, and B. Nadal-Ginard. 1991. α-Tropomyosin mutually exclusive exon selection: competition between branch point/polypyrimidine tracts determines default exon choice. Genes Dev. 5:642–655.
   PubMed Web of Science ®Google Scholar
• Noble, J. C. S., C. Prives, and J. L. Manley. 1988. Alternative splicing of SV40 early pre-mRNA is determined by branch site selection. Genes Dev. 2:1460–1475.
   PubMedGoogle Scholar
• Padgett, R. A., P. J. Grabowski, M. M. Konarska, S. Seiler, and P. A. Sharp. 1986. Splicing of messenger RNA precursors. Annu. Rev. Biochem. 55:1119–1150.
   PubMed Web of Science ®Google Scholar
• Patterson, B., and C. Guthrie. 1991. A U-rich tract enhances usage of an alternative 3' splice site in yeast. Cell 64:181–187.
   PubMedGoogle Scholar
• Pautot, V., R. Brzezinski, and M. Tepfer. 1989. Expression of a mouse metallothionein gene in transgenic plant tissues. Gene 77:133–140.
   PubMedGoogle Scholar
• Reed, R. 1989. The organization of 3' splice-site sequences in mammalian introns. Genes Dev. 3:2113–2123.
   PubMedGoogle Scholar
• Reed, R. 1990. Protein composition of mammalian spliceosomes assembled in vitro. Proc. Natl. Acad. Sci. USA 87:8031–8035.
   PubMed Web of Science ®Google Scholar
• Reed, R., and T. Maniatis. 1985. Intron sequences involved in lariat formation during pre-mRNA splicing. Cell 41:95–105.
   PubMed Web of Science ®Google Scholar
• Reed, R., and T. Maniatis. 1988. The role of the mammalian branchpoint sequence in pre-mRNA splicing. Genes Dev. 2:1268–1276.
   PubMedGoogle Scholar
• Rogers, S. G., R. B. Horsch, and R. T. Fraley. 1986. Gene transfer in plants: production of transformed plants using Ti plasmid vectors. Methods Enzymol. 118:627–640.
   Google Scholar
• Ruskin, B., and M. R. Green. 1985. Role of the 3' splice site consensus sequence in mammalian pre-mRNA splicing. Nature (London) 317:732–734.
   PubMed Web of Science ®Google Scholar
• Ruskin, B., P. D. Zamore, and M. R. Green. 1988. A factor, U2AF, is required for U2 snRNP binding and splicing complex assembly. Cell 52:207–219.
   PubMed Web of Science ®Google Scholar
• Smith, C. W. J., and B. Nadal-Ginard. 1989. Mutually exclusive splicing of α-tropomysin exons enforced by an unusual lariat branch point location: implications for constitutive splicing. Cell 56:749–758.
   PubMed Web of Science ®Google Scholar
• Smith, C. W. J., J. G. Patton, and B. Nadal-Ginard. 1989. Alternative splicing in the control of gene expression. Annu. Rev. Genet. 23:527–577.
   PubMed Web of Science ®Google Scholar
• Smith, C. W. J., E. B. Porro, J. G. Patton, and B. Nadal-Ginard. 1989. Scanning from an independently specified branch point defines the 3' splice site of mammalian introns. Nature (London) 342:243–247.
   PubMed Web of Science ®Google Scholar
• Swanson, M. S., and G. Dreyfuss. 1988. RNA binding specificity of hnRNP proteins: a subset bind to the 3' end of introns. EMBO J. 7:3519–3529.
   PubMed Web of Science ®Google Scholar
• Swanson, M. S., and G. Dreyfuss. 1988. Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol. Cell. Biol. 8:2237–2241.
   PubMed Web of Science ®Google Scholar
• Tazi, J., C. Alibert, J. Temsamani, I. Reveilland, G. Cathala, C. Brunei, and P. Jeanteau. 1986. A protein that specifically recognizes the 3' splice site of mammalian pre-mRNA introns is associated with a small nuclear ribonucleoprotein. Cell 45:755–766.
   Google Scholar
• Van Santen, V., and R. Spritz. 1987. Splicing of plant pre-mRNAs in animal systems and vice versa. Gene 56:253–265.
   PubMed Web of Science ®Google Scholar
• Wiebauer, K., J.-J. Herrero, and W. Filipowicz. 1988. Nuclear pre-mRNA processing in plants: distinct modes of 3'-splice site selection in plants and animals. Mol. Cell. Biol. 8:2042–2051.
   PubMed Web of Science ®Google Scholar